Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Forward (+)

67487377 .. 67490457

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG367400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGTTCTTGCAGCAGAAGAAGAGAGGATGAAGACTCTGAATTTCCAGGCTTCTACAAGTGTGTTGATTATTCTGTTCTTCTAAAGGGGAAGCTTAAAATCCCCCGAGATTTTTGCGAGAACTTTGAAGGAAAGATGCCTCAACAGTGCCGTCTTCAGACTCTTTCTGGAACTTGGCATGTTGATGTGAAAAATATTAGCGGAGAGTTCTTCTTGAAAAAGGGCTGGAAGGAATTTGTTGTGGCAAATCGTTTGAAACTAGGTGAATGTGTAGTCTTTGATTACATTGGACATGCAAAGTTCTATGTTGAGATCTATGGACACAATCACTGCAGCAAGAGTTCAAAGGCAATGAGAAGTGAGAGGCTTCTTGATGATGACTCTGATGATCATAATGTTGTTTTTGTTTACTCGGATTCTGATTCTGAACCTCGAAACAGTGAAATCAGCTTGGAGTCTGAAACTGAGTGTCCTAGGAAATCAGGTTATGGAAAAATATTGTCAAGGAGAGGAAGAGCTGGTAACTCAGCCACCATAAGATGTTTTGGTAATCCTTGCTTCAGTGTTAAGATGTGCCAAACTCATGTGACCAAGGGACCACTGCTCACACCAAGGAGCTTCATGAGGAACATACATAAGCCAAAGAAAGTCAAGCTTCAAGTTGGAGACATGGCCTGGGATGTGAACTGGATCCATCCTTACCAGCAATCTAGCAGGTTCAGTGGAGGTTGGCTACACTTTGCTAGCCAGAACAGGTTGCAAGAGGGAGATTTCTGTGACTTTGAGCTGATTTCAAAGACAATTGAGGTTGCAGTGATGAAGGTTTCTATTAGGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

280

Amino Acids

32.21

Weight (kDa)

8.88

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	25 - 107	1.3e-15	B3 DNA binding domain
B3	PF02362	193 - 268	9.7e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	705
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	685, 698
AcsI	RAATTY	2 cut(s)	41, 233
AcuI	CTGAAG	2 cut(s)	140, 544
AgsI	TTSAA	6 cut(s)	128, 217, 256, 345, 659, 795
AjnI	CCWGG	2 cut(s)	46, 674
AluBI	AGCT	6 cut(s)	94, 450, 518, 618, 655, 787
AluI	AGCT	6 cut(s)	94, 450, 518, 618, 655, 787
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	685, 698
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	672
ApeKI	GCWGC	2 cut(s)	12, 333
ApoI	RAATTY	2 cut(s)	41, 233
AspA2I	CCTAGG	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	596
AvrII	CCTAGG	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	690
BbsI	GAAGAC	2 cut(s)	39, 146
BbvI	GCAGC	2 cut(s)	24, 345
BccI	CCATC	1 cut(s)	702
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	2 cut(s)	48, 676
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	4 cut(s)	260, 474, 711, 744
BfmI	CTRYAG	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	705
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	2 cut(s)	13, 334
BlnI	CCTAGG	1 cut(s)	473
BlsI	GCNGC	2 cut(s)	14, 335
Bme1390I	CCNGG	2 cut(s)	48, 676
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	2 cut(s)	597, 692
BmrFI	CCNGG	2 cut(s)	48, 676
BmsI	GCATC	1 cut(s)	126
BmtI	GCTAGC	1 cut(s)	747
BpiI	GAAGAC	2 cut(s)	39, 146
BsaJI	CCNNGG	4 cut(s)	473, 591, 611, 675
Bse1I	ACTGG	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	48, 676
BseDI	CCNNGG	4 cut(s)	473, 591, 611, 675
BseGI	GGATG	3 cut(s)	34, 685, 694
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	456, 540
BseNI	ACTGG	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	24, 345
BshFI	GGCC	1 cut(s)	674
BsiHKCI	CYCGRG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	674
BsoBI	CYCGRG	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	312, 388, 690
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	674
BspCNI	CTCAG	2 cut(s)	457, 539
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	2 cut(s)	597, 692
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	705
BspOI	GCTAGC	1 cut(s)	747
BspPI	GGATC	2 cut(s)	685, 698
BspQI	GCTCTTC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	4 cut(s)	473, 591, 611, 675
BssMI	GATC	3 cut(s)	312, 388, 690
BssT1I	CCWWGG	3 cut(s)	473, 591, 611
Bst2UI	CCWGG	2 cut(s)	48, 676
Bst4CI	ACNGT	2 cut(s)	147, 440
Bst6I	CTCTTC	2 cut(s)	16, 508
BstC8I	GCNNGC	1 cut(s)	745
BstDEI	CTNAG	2 cut(s)	465, 526
BstF5I	GGATG	3 cut(s)	34, 685, 694
BstKTI	GATC	3 cut(s)	315, 391, 693
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	3 cut(s)	312, 388, 690
BstNI	CCWGG	2 cut(s)	48, 676
BstNSI	RCATGY	2 cut(s)	182, 296
BstSCI	CCNGG	2 cut(s)	46, 674
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	24, 345
BstV2I	GAAGAC	2 cut(s)	39, 146
BstX2I	RGATCY	2 cut(s)	312, 690
BstYI	RGATCY	2 cut(s)	312, 690
BsuRI	GGCC	1 cut(s)	674
BtsCI	GGATG	3 cut(s)	34, 685, 694
BtsI	GCAGTG	3 cut(s)	328, 599, 819
BtsIMutI	CAGTG	7 cut(s)	152, 328, 445, 568, 599, 727, 819
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	745
CciI	TCATGA	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	596
CviAII	CATG	5 cut(s)	179, 293, 584, 622, 670
DdeI	CTNAG	2 cut(s)	465, 526
DpnI	GATC	3 cut(s)	314, 390, 692
DpnII	GATC	3 cut(s)	312, 388, 690
Eam1104I	CTCTTC	2 cut(s)	16, 508
EarI	CTCTTC	2 cut(s)	16, 508
Eco130I	CCWWGG	3 cut(s)	473, 591, 611
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	2 cut(s)	140, 544
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	46, 674
EcoT14I	CCWWGG	3 cut(s)	473, 591, 611
ErhI	CCWWGG	3 cut(s)	473, 591, 611
FaeI	CATG	5 cut(s)	182, 296, 587, 625, 673
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	5 cut(s)	178, 292, 583, 621, 669
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	13, 334
FokI	GGATG	3 cut(s)	41, 681, 692
Fsp4HI	GCNGC	2 cut(s)	13, 334
FspBI	CTAG	4 cut(s)	260, 474, 711, 744
GluI	GCNGC	2 cut(s)	13, 334
HaeIII	GGCC	1 cut(s)	674
Hin1II	CATG	5 cut(s)	182, 296, 587, 625, 673
HindIII	AAGCTT	2 cut(s)	92, 653
HinfI	GANTC	6 cut(s)	35, 160, 380, 416, 422, 455
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	409, 685
Hpy188I	TCNGA	7 cut(s)	40, 159, 385, 415, 421, 427, 460
Hpy188III	TCNNGA	4 cut(s)	168, 214, 371, 622
Hpy8I	GTNNAC	2 cut(s)	409, 685
HpyAV	CCTTC	3 cut(s)	122, 223, 814
HpyCH4III	ACNGT	2 cut(s)	147, 440
HpyCH4V	TGCA	5 cut(s)	12, 296, 333, 760, 812
HpyF3I	CTNAG	2 cut(s)	465, 526
Hsp92II	CATG	5 cut(s)	182, 296, 587, 625, 673
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	312, 388, 690
LguI	GCTCTTC	1 cut(s)	508
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	2 cut(s)	24, 345
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	4 cut(s)	260, 474, 711, 744
MaeIII	GTNAC	3 cut(s)	521, 586, 776
MalI	GATC	3 cut(s)	314, 390, 692
MboI	GATC	3 cut(s)	312, 388, 690
MboII	GAAGA	7 cut(s)	30, 33, 44, 71, 146, 202, 525
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	2 cut(s)	312, 690
MluCI	AATT	3 cut(s)	41, 233, 801
MlyI	GAGTC	4 cut(s)	29, 154, 374, 464
MmeI	TCCRAC	1 cut(s)	643
MnlI	CCTC	9 cut(s)	19, 150, 357, 441, 503, 618, 719, 757, 799
MseI	TTAA	2 cut(s)	96, 567
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	48, 676
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	2 cut(s)	48, 676
NdeII	GATC	3 cut(s)	312, 388, 690
NheI	GCTAGC	1 cut(s)	743
NlaIII	CATG	5 cut(s)	182, 296, 587, 625, 673
NlaIV	GGNNCC	2 cut(s)	597, 692
NmuCI	GTSAC	2 cut(s)	586, 776
NspI	RCATGY	2 cut(s)	182, 296
PagI	TCATGA	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	416, 422
PkrI	GCNGC	2 cut(s)	14, 335
PleI	GAGTC	4 cut(s)	29, 154, 374, 463
PpsI	GAGTC	4 cut(s)	29, 154, 374, 463
Psp6I	CCWGG	2 cut(s)	46, 674
PspGI	CCWGG	2 cut(s)	46, 674
PspN4I	GGNNCC	2 cut(s)	597, 692
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	312, 690
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	508
SaqAI	TTAA	2 cut(s)	96, 567
SatI	GCNGC	2 cut(s)	13, 334
Sau3AI	GATC	3 cut(s)	312, 388, 690
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	4 cut(s)	29, 154, 374, 464
ScrFI	CCNGG	2 cut(s)	48, 676
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	331
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	41, 233, 801
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	2 cut(s)	196, 498
SspMI	CTAG	4 cut(s)	260, 474, 711, 744
StyD4I	CCNGG	2 cut(s)	46, 674
StyI	CCWWGG	3 cut(s)	473, 591, 611
TaaI	ACNGT	2 cut(s)	147, 440
TaqI	TCGA	1 cut(s)	433
TasI	AATT	3 cut(s)	41, 233, 801
TfiI	GAWTC	2 cut(s)	416, 422
Tru1I	TTAA	2 cut(s)	96, 567
Tru9I	TTAA	2 cut(s)	96, 567
TscAI	CASTG	7 cut(s)	152, 335, 445, 568, 606, 727, 819
TseFI	GTSAC	2 cut(s)	586, 776
TseI	GCWGC	2 cut(s)	12, 333
Tsp45I	GTSAC	2 cut(s)	586, 776
TspDTI	ATGAA	3 cut(s)	45, 610, 833
TspRI	CASTG	7 cut(s)	152, 335, 445, 568, 606, 727, 819
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	41, 233
XceI	RCATGY	2 cut(s)	182, 296
XmaJI	CCTAGG	1 cut(s)	473
XspI	CTAG	4 cut(s)	260, 474, 711, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.