Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Forward (+)

3788864 .. 3791081

Gene Structure 2218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCCTTGTTCTCAGTGACCTTGCTGTTTCTGGTGCCCAAAGGAGCAAAGCTTATTCAGACCCCAAAAAGAAGAGGTAGCAAAGCCAACTCTGTGATGGGTTCTTGCAGCAGAAGAAGAGAGGATGAAGGCTCTGAAAATCCAGGCTTCTACAAGTGTGTTGATTACTCTGTTCTTTCAACAGGGAAGCTTAAAGTCCCCCAAGATTTTTGTGAGAATTTTGAAGTAAAGGTGCCTCATCAATGCCACCTTGAGACTTTTTCTGGATCTTGGCTTGTTGGTTTGAAAAGGATTAGTAGAGAGTTCTTCTTCAAAAAGGGTTGGAGGGAATTTGTAGAGGGAAATTGTTTGAAACTAGGTGAATATATGGTCTTGCAGTACATTGGACATGCAAAGTTCAATGTTGAAATTTATGGGCTCAATCGTTGCAATAAGATGTCAAAGGCTGGGAAAAGTGACAGGCTTCTTGATGATTTTGATGTGATTGTTGTGGACTCTGATTCAGATTCTGAAATTGAGTTTCCTAGGGAACTGGTTTGTGGAAGAAAATTGTCAAGGAGAGGTAGACCTCGTAATTTAGCCACCGTAAACCGTTCTGGAAATCCCTGCTTCAGTGTCCAGATGTGCCAGACTCATGTGACCAAGGGACCATTGCTCACACCAAGGAGCTTCATGAGGAACACACACAAGCCAAAGAAAGTTGAGCTTCAAGTTGGAGACATGGTCTGGGAGGTGAACTGGATCCATCCTTACCAGAAGTCTAGTAGGTTCAGTGGAGGCTGGCTACGTTTTGTGAGCCATAACGGATTGCAAGAGGGAGATTTATGTGACTTTGAGCTGATATCGAAGACAAATGAGGTTGCGGTGATGAACGTTTCTTTTAGGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

297

Amino Acids

34.01

Weight (kDa)

9.39

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	56 - 137	7.6e-12	B3 DNA binding domain
B3	PF02362	206 - 286	2.7e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	34, 232
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	1 cut(s)	863
AclI	AACGTT	1 cut(s)	873
AclWI	GGATC	3 cut(s)	274, 736, 749
AcsI	RAATTY	3 cut(s)	217, 329, 408
AcuI	CTGAAG	1 cut(s)	595
AfaI	GTAC	1 cut(s)	380
AgsI	TTSAA	8 cut(s)	180, 224, 286, 313, 352, 400, 407, 710
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	5 cut(s)	52, 190, 669, 706, 838
AluI	AGCT	5 cut(s)	52, 190, 669, 706, 838
Alw26I	GTCTC	2 cut(s)	248, 711
AlwI	GGATC	3 cut(s)	274, 736, 749
AlwNI	CAGNNNCTG	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	3 cut(s)	217, 329, 408
AspA2I	CCTAGG	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	3 cut(s)	371, 745, 877
AvaII	GGWCC	1 cut(s)	647
AvrII	CCTAGG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	741
BanI	GGYRCC	2 cut(s)	34, 232
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	854
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	2 cut(s)	91, 753
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	248, 711
BfaI	CTAG	3 cut(s)	356, 525, 762
BisI	GCNGC	1 cut(s)	109
BlnI	CCTAGG	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	4 cut(s)	36, 234, 648, 743
BmrFI	CCNGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	854
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	524, 642, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bse1I	ACTGG	2 cut(s)	537, 743
Bse3DI	GCAATG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	524, 642, 662
BseGI	GGATG	2 cut(s)	130, 745
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	537, 743
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	446
BshNI	GGYRCC	2 cut(s)	34, 232
BslFI	GGGAC	2 cut(s)	182, 660
BsmAI	GTCTC	2 cut(s)	248, 711
BsmFI	GGGAC	2 cut(s)	182, 660
Bsp1286I	GDGCHC	2 cut(s)	39, 420
Bsp143I	GATC	2 cut(s)	266, 741
BspACI	CCGC	1 cut(s)	863
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	4 cut(s)	36, 234, 648, 743
BspPI	GGATC	3 cut(s)	274, 736, 749
BspT107I	GGYRCC	2 cut(s)	34, 232
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	2 cut(s)	537, 743
BssECI	CCNNGG	3 cut(s)	524, 642, 662
BssMI	GATC	2 cut(s)	266, 741
BssT1I	CCWWGG	3 cut(s)	524, 642, 662
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	586, 593
Bst6I	CTCTTC	2 cut(s)	67, 112
BstC8I	GCNNGC	1 cut(s)	782
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	130, 745
BstKTI	GATC	2 cut(s)	269, 744
BstMAI	GTCTC	2 cut(s)	248, 711
BstMBI	GATC	2 cut(s)	266, 741
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	2 cut(s)	266, 741
BstYI	RGATCY	2 cut(s)	266, 741
BtsCI	GGATG	2 cut(s)	130, 745
BtsIMutI	CAGTG	3 cut(s)	21, 619, 778
Cac8I	GCNNGC	1 cut(s)	782
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	4 cut(s)	389, 635, 673, 721
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	2 cut(s)	268, 743
DpnII	GATC	2 cut(s)	266, 741
Eam1104I	CTCTTC	2 cut(s)	67, 112
EarI	CTCTTC	2 cut(s)	67, 112
Eco130I	CCWWGG	3 cut(s)	524, 642, 662
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	843
EcoT14I	CCWWGG	3 cut(s)	524, 642, 662
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	3 cut(s)	524, 642, 662
FaeI	CATG	4 cut(s)	392, 638, 676, 724
FaiI	YATR	9 cut(s)	366, 368, 390, 414, 636, 674, 722, 801, 826
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	2 cut(s)	182, 660
FatI	CATG	4 cut(s)	388, 634, 672, 720
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	2 cut(s)	137, 732
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	3 cut(s)	356, 525, 762
GluI	GCNGC	1 cut(s)	109
GsaI	CCCAGC	1 cut(s)	450
Hin1II	CATG	4 cut(s)	392, 638, 676, 724
HindIII	AAGCTT	2 cut(s)	50, 188
HinfI	GANTC	4 cut(s)	494, 500, 506, 631
HphI	GGTGA	3 cut(s)	371, 745, 877
Hpy166II	GTNNAC	4 cut(s)	493, 566, 589, 736
Hpy188I	TCNGA	5 cut(s)	60, 136, 499, 505, 511
Hpy188III	TCNNGA	5 cut(s)	264, 467, 597, 619, 673
Hpy8I	GTNNAC	4 cut(s)	493, 566, 589, 736
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	586, 593
HpyCH4IV	ACGT	2 cut(s)	787, 873
HpyCH4V	TGCA	5 cut(s)	108, 376, 392, 429, 811
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	2 cut(s)	787, 873
Hsp92II	CATG	4 cut(s)	392, 638, 676, 724
Kzo9I	GATC	2 cut(s)	266, 741
LmnI	GCTCC	2 cut(s)	44, 666
Lsp1109I	GCAGC	1 cut(s)	120
MaeI	CTAG	3 cut(s)	356, 525, 762
MaeII	ACGT	2 cut(s)	787, 873
MaeIII	GTNAC	4 cut(s)	16, 455, 637, 827
MalI	GATC	2 cut(s)	268, 743
MboI	GATC	2 cut(s)	266, 741
MboII	GAAGA	7 cut(s)	84, 126, 129, 298, 301, 555, 859
MflI	RGATCY	2 cut(s)	266, 741
MhlI	GDGCHC	2 cut(s)	39, 420
MluCI	AATT	7 cut(s)	217, 329, 343, 408, 513, 548, 574
MlyI	GAGTC	2 cut(s)	488, 625
MmeI	TCCRAC	2 cut(s)	302, 694
MseI	TTAA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	266, 741
NlaIII	CATG	4 cut(s)	392, 638, 676, 724
NlaIV	GGNNCC	4 cut(s)	36, 234, 648, 743
NmuCI	GTSAC	4 cut(s)	16, 455, 637, 827
NspI	RCATGY	1 cut(s)	392
PagI	TCATGA	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	500, 506
PflFI	GACNNNGTC	1 cut(s)	722
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	2 cut(s)	488, 625
PpsI	GAGTC	2 cut(s)	488, 625
Psp1406I	AACGTT	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	4 cut(s)	36, 234, 648, 743
PspPI	GGNCC	1 cut(s)	647
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	2 cut(s)	266, 741
PsyI	GACNNNGTC	1 cut(s)	722
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	266, 741
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	2 cut(s)	488, 625
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	39, 420
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	7 cut(s)	217, 329, 343, 408, 513, 548, 574
SsiI	CCGC	1 cut(s)	863
SspMI	CTAG	3 cut(s)	356, 525, 762
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	3 cut(s)	524, 642, 662
TaaI	ACNGT	2 cut(s)	586, 593
TaiI	ACGT	2 cut(s)	790, 876
TaqI	TCGA	1 cut(s)	845
TasI	AATT	7 cut(s)	217, 329, 343, 408, 513, 548, 574
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	500, 506
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	21, 619, 778
TseFI	GTSAC	4 cut(s)	16, 455, 637, 827
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	4 cut(s)	16, 455, 637, 827
TspDTI	ATGAA	3 cut(s)	141, 661, 884
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	3 cut(s)	21, 619, 778
Tth111I	GACNNNGTC	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	3 cut(s)	217, 329, 408
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmaJI	CCTAGG	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	565
XspI	CTAG	3 cut(s)	356, 525, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.