Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Forward (+)

64269381 .. 64271316

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG393400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGTTCTTGCAGCAGAAGAAGAGAGGATGAAGACTCTGAATTTCCAGGCTTCTACAAGTGTGTTGATTATTCTGTTCTTCTAAAGGGGAAGCTTAAAATCCCCCGAGATTTTTGCGAGAACTTTGAAGGAAAGATGCCTCAGCAGTGCCGTCTTCAGACTCTTTCTGGAACTTGGCATGTTGATGTGAAAAATATTAGCGGGGAGTTCTTCTTGAAAAGGGGCTGGAAGGAATTTGTTGTGGGAAATCGTTTGAAGCTAGGTGAATGTGTAGTCTTTGATTACCCTGGACATGCAAAGTTCTATGTTGAGATCTATGGACACAATCACTGCAGCAAGAGTTCAAAGGCAATGAGAAGTGAGAGGCTTCTTGATGATGACTCTGATGATCATAATGTTGTTTTTGTTGACTCGGAATCTGATTCTGAACCTCAAAACAGTGAAATCAGCTTGGAGTCTGAAACTGAGTGTCCTAGGAAATCAGGTTATGGAAAAAAATTGTCAAGGAGAGGTAGAGCTGGTAACTCAGCCACCATAAGACGTTTTGGTAATCCTTGCTTCAGTGTTAAGATGTGCCAAACTCATGTGACCAAGGGACCACTGCTCACACCAAGGAGCTTCATGAGGAACATACATAAGCCAAAGAAAGTCAAGCTTCAAGTTGGAGACATGGCCTGGGATGTGAATTGGATTCATCCTTACCAGCAATCTAGCAGGTTCAGTGGAGGGCTACACTTTGCTAGCCAGAACACGTTGCAAGAGGGAGATTTCTGTGACTTTGAGCTGATTTCAAAGACAATTGAGGTTGCAGTGATGAAGGTTTCTATTAGGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

279

Amino Acids

31.98

Weight (kDa)

8.83

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	25 - 107	8.9e-14	B3 DNA binding domain
B3	PF02362	193 - 267	6.3e-07	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	705
AciI	CCGC	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	41, 233
AcuI	CTGAAG	2 cut(s)	140, 544
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	6 cut(s)	128, 217, 256, 345, 659, 792
AjnI	CCWGG	3 cut(s)	46, 286, 674
AluBI	AGCT	7 cut(s)	94, 259, 450, 518, 618, 655, 784
AluI	AGCT	7 cut(s)	94, 259, 450, 518, 618, 655, 784
Alw26I	GTCTC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	672
ApeKI	GCWGC	2 cut(s)	12, 333
ApoI	RAATTY	2 cut(s)	41, 233
AspA2I	CCTAGG	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	740
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	596
AvrII	CCTAGG	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	39, 146
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	24, 345
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BciT130I	CCWGG	3 cut(s)	48, 288, 676
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	4 cut(s)	260, 474, 711, 741
BfmI	CTRYAG	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	705
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	2 cut(s)	13, 334
BlnI	CCTAGG	1 cut(s)	473
BlsI	GCNGC	2 cut(s)	14, 335
Bme1390I	CCNGG	3 cut(s)	48, 288, 676
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	3 cut(s)	48, 288, 676
BmsI	GCATC	1 cut(s)	126
BmtI	GCTAGC	1 cut(s)	744
BpiI	GAAGAC	2 cut(s)	39, 146
Bpu10I	CCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	5 cut(s)	286, 473, 591, 611, 675
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	48, 288, 676
BseDI	CCNNGG	5 cut(s)	286, 473, 591, 611, 675
BseGI	GGATG	3 cut(s)	34, 685, 694
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	155, 456, 540
BseXI	GCAGC	2 cut(s)	24, 345
BshFI	GGCC	1 cut(s)	674
BsiHKCI	CYCGRG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	674
BsoBI	CYCGRG	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	312, 388
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	674
BspCNI	CTCAG	3 cut(s)	154, 457, 539
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	705
BspOI	GCTAGC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	5 cut(s)	286, 473, 591, 611, 675
BssMI	GATC	2 cut(s)	312, 388
BssT1I	CCWWGG	3 cut(s)	473, 591, 611
Bst2UI	CCWGG	3 cut(s)	48, 288, 676
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	742
BstDEI	CTNAG	3 cut(s)	141, 465, 526
BstF5I	GGATG	3 cut(s)	34, 685, 694
BstKTI	GATC	2 cut(s)	315, 391
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	312, 388
BstNI	CCWGG	3 cut(s)	48, 288, 676
BstNSI	RCATGY	2 cut(s)	182, 296
BstSCI	CCNGG	3 cut(s)	46, 286, 674
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	24, 345
BstV2I	GAAGAC	2 cut(s)	39, 146
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	674
BtsCI	GGATG	3 cut(s)	34, 685, 694
BtsI	GCAGTG	4 cut(s)	152, 328, 599, 816
BtsIMutI	CAGTG	7 cut(s)	152, 328, 445, 568, 599, 727, 816
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	742
CciI	TCATGA	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	596
CviAII	CATG	5 cut(s)	179, 293, 584, 622, 670
DdeI	CTNAG	3 cut(s)	141, 465, 526
DpnI	GATC	2 cut(s)	314, 390
DpnII	GATC	2 cut(s)	312, 388
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	3 cut(s)	473, 591, 611
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	2 cut(s)	140, 544
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	3 cut(s)	46, 286, 674
EcoT14I	CCWWGG	3 cut(s)	473, 591, 611
ErhI	CCWWGG	3 cut(s)	473, 591, 611
FaeI	CATG	5 cut(s)	182, 296, 587, 625, 673
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	5 cut(s)	178, 292, 583, 621, 669
FauI	CCCGC	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	13, 334
FokI	GGATG	3 cut(s)	41, 681, 692
Fsp4HI	GCNGC	2 cut(s)	13, 334
FspBI	CTAG	4 cut(s)	260, 474, 711, 741
GluI	GCNGC	2 cut(s)	13, 334
HaeIII	GGCC	1 cut(s)	674
Hin1II	CATG	5 cut(s)	182, 296, 587, 625, 673
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	2 cut(s)	92, 653
HinfI	GANTC	8 cut(s)	35, 160, 380, 410, 416, 422, 455, 691
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	7 cut(s)	40, 159, 385, 415, 421, 427, 460
Hpy188III	TCNNGA	4 cut(s)	168, 214, 371, 622
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	3 cut(s)	122, 223, 811
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	2 cut(s)	541, 752
HpyCH4V	TGCA	5 cut(s)	12, 296, 333, 757, 809
HpyF3I	CTNAG	3 cut(s)	141, 465, 526
HpySE526I	ACGT	2 cut(s)	541, 752
Hsp92II	CATG	5 cut(s)	182, 296, 587, 625, 673
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	312, 388
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	2 cut(s)	24, 345
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	4 cut(s)	260, 474, 711, 741
MaeII	ACGT	2 cut(s)	541, 752
MaeIII	GTNAC	3 cut(s)	521, 586, 773
MalI	GATC	2 cut(s)	314, 390
MboI	GATC	2 cut(s)	312, 388
MboII	GAAGA	6 cut(s)	30, 33, 44, 71, 146, 202
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	312
MluCI	AATT	5 cut(s)	41, 233, 497, 685, 798
MlyI	GAGTC	5 cut(s)	29, 154, 374, 404, 464
MmeI	TCCRAC	1 cut(s)	643
MnlI	CCTC	9 cut(s)	19, 150, 357, 441, 503, 618, 719, 754, 796
MseI	TTAA	2 cut(s)	96, 567
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	48, 288, 676
MunI	CAATTG	1 cut(s)	798
MvaI	CCWGG	3 cut(s)	48, 288, 676
NdeII	GATC	2 cut(s)	312, 388
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	5 cut(s)	182, 296, 587, 625, 673
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	586, 773
NspI	RCATGY	2 cut(s)	182, 296
PagI	TCATGA	1 cut(s)	621
PfeI	GAWTC	3 cut(s)	416, 422, 691
PkrI	GCNGC	2 cut(s)	14, 335
PleI	GAGTC	5 cut(s)	29, 154, 374, 404, 463
PpsI	GAGTC	5 cut(s)	29, 154, 374, 404, 463
Psp6I	CCWGG	3 cut(s)	46, 286, 674
PspGI	CCWGG	3 cut(s)	46, 286, 674
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	96, 567
SatI	GCNGC	2 cut(s)	13, 334
Sau3AI	GATC	2 cut(s)	312, 388
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	5 cut(s)	29, 154, 374, 404, 464
ScrFI	CCNGG	3 cut(s)	48, 288, 676
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	331
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	5 cut(s)	41, 233, 497, 685, 798
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	4 cut(s)	260, 474, 711, 741
StyD4I	CCNGG	3 cut(s)	46, 286, 674
StyI	CCWWGG	3 cut(s)	473, 591, 611
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	2 cut(s)	544, 755
TasI	AATT	5 cut(s)	41, 233, 497, 685, 798
TfiI	GAWTC	3 cut(s)	416, 422, 691
Tru1I	TTAA	2 cut(s)	96, 567
Tru9I	TTAA	2 cut(s)	96, 567
TscAI	CASTG	7 cut(s)	152, 335, 445, 568, 606, 727, 816
TseFI	GTSAC	2 cut(s)	586, 773
TseI	GCWGC	2 cut(s)	12, 333
Tsp45I	GTSAC	2 cut(s)	586, 773
TspDTI	ATGAA	4 cut(s)	45, 610, 683, 830
TspRI	CASTG	7 cut(s)	152, 335, 445, 568, 606, 727, 816
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	41, 233
XceI	RCATGY	2 cut(s)	182, 296
XmaJI	CCTAGG	1 cut(s)	473
XspI	CTAG	4 cut(s)	260, 474, 711, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.