B3 DNA binding domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g12870 FvH4_7g12880 |
| rosa_chinensis | RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191 |
| rosa_laevigata | RLG00000006289 RLG00000016048 RLG00000028372 |
| rosa_multiflora | Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180 |
| rosa_rugosa | Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900 |
| rosa_samantha | Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600 |
| rosa_wichuraiana | Rw1G020620 Rw2G004280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 137 |
| AluBI | AGCT | 2 cut(s) | 7, 23 |
| AluI | AGCT | 2 cut(s) | 7, 23 |
| AspS9I | GGNCC | 2 cut(s) | 27, 151 |
| AsuHPI | GGTGA | 1 cut(s) | 125 |
| AvaII | GGWCC | 2 cut(s) | 27, 151 |
| BfaI | CTAG | 3 cut(s) | 8, 24, 57 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| Bme18I | GGWCC | 2 cut(s) | 27, 151 |
| BmgT120I | GGNCC | 2 cut(s) | 27, 151 |
| BmsI | GCATC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 30 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseDI | CCNNGG | 1 cut(s) | 30 |
| BseGI | GGATG | 1 cut(s) | 52 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseRI | GAGGAG | 2 cut(s) | 158, 161 |
| Bsp19I | CCATGG | 1 cut(s) | 30 |
| BspHI | TCATGA | 2 cut(s) | 156, 165 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 30 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| BstDSI | CCRYGG | 1 cut(s) | 30 |
| BstF5I | GGATG | 1 cut(s) | 52 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BtgI | CCRYGG | 1 cut(s) | 30 |
| BtsCI | GGATG | 1 cut(s) | 52 |
| CciI | TCATGA | 2 cut(s) | 156, 165 |
| Cfr13I | GGNCC | 2 cut(s) | 27, 151 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 3 cut(s) | 31, 157, 166 |
| CviJI | RGCY | 3 cut(s) | 7, 23, 70 |
| CviKI_1 | RGCY | 3 cut(s) | 7, 23, 70 |
| CviQI | GTAC | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco47I | GGWCC | 2 cut(s) | 27, 151 |
| EcoO109I | RGGNCCY | 1 cut(s) | 151 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| FaeI | CATG | 3 cut(s) | 34, 160, 169 |
| FaiI | YATR | 6 cut(s) | 32, 87, 105, 158, 167, 197 |
| FatI | CATG | 3 cut(s) | 30, 156, 165 |
| FokI | GGATG | 1 cut(s) | 59 |
| FspBI | CTAG | 3 cut(s) | 8, 24, 57 |
| Hin1II | CATG | 3 cut(s) | 34, 160, 169 |
| HphI | GGTGA | 1 cut(s) | 125 |
| Hpy166II | GTNNAC | 2 cut(s) | 75, 116 |
| Hpy188III | TCNNGA | 2 cut(s) | 157, 166 |
| Hpy8I | GTNNAC | 2 cut(s) | 75, 116 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyCH4IV | ACGT | 2 cut(s) | 138, 207 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 191 |
| HpySE526I | ACGT | 2 cut(s) | 138, 207 |
| Hsp92II | CATG | 3 cut(s) | 34, 160, 169 |
| LpnPI | CCDG | 2 cut(s) | 51, 146 |
| LweI | GCATC | 1 cut(s) | 37 |
| MaeI | CTAG | 3 cut(s) | 8, 24, 57 |
| MaeII | ACGT | 2 cut(s) | 138, 207 |
| MmeI | TCCRAC | 1 cut(s) | 78 |
| MnlI | CCTC | 8 cut(s) | 7, 28, 136, 139, 142, 153, 164, 172 |
| NcoI | CCATGG | 1 cut(s) | 30 |
| NlaIII | CATG | 3 cut(s) | 34, 160, 169 |
| PagI | TCATGA | 2 cut(s) | 156, 165 |
| PpuMI | RGGWCCY | 1 cut(s) | 151 |
| Psp5II | RGGWCCY | 1 cut(s) | 151 |
| PspPI | GGNCC | 2 cut(s) | 27, 151 |
| PspPPI | RGGWCCY | 1 cut(s) | 151 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| Sau96I | GGNCC | 2 cut(s) | 27, 151 |
| SfaNI | GCATC | 1 cut(s) | 37 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SgeI | CNNG | 8 cut(s) | 20, 36, 43, 69, 78, 145, 169, 178 |
| SinI | GGWCC | 2 cut(s) | 27, 151 |
| SspMI | CTAG | 3 cut(s) | 8, 24, 57 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaiI | ACGT | 2 cut(s) | 141, 210 |
| TspDTI | ATGAA | 3 cut(s) | 17, 120, 154 |
| VpaK11BI | GGWCC | 2 cut(s) | 27, 151 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 37 |
| XspI | CTAG | 3 cut(s) | 8, 24, 57 |