Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002871

Physical Location & Seq

Genomic Coordinates Forward (+)

11637298 .. 11640413

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTTCTTGCAGCAGAAGAAGAAAGGATGAAGACACTAATTGTCCAGGTTTCTACAAGTGTGTGGATGAGTCTGTTCTTCACAAAGGGAAGCTCCAAATTCCCAAAGATTTTTGCTGGTTTGATGGAGTGGTGCCTCAGCAGTGCCATCTTCAGACTCTGTATGGAAGTTGGAATGTGGATGTCAAAAGGATTAAGAGAGTGTTCTTCTTGGAAAAGGGTTTGGAGGAATTTGTAGTTGGCAACTCTTTGAAGCAAGGTGAATCTTTGGTTCTGCAATACGTTGGAATTGCAAAGTTCTTTGTTCAAATATATGGACTCAATCACTGTGAGAGGTCAAAGGCCAGTGAGATCAGCTTAGTGGACTCTGAAAATGACGAAGAAGATGTGATTATTATTGACTCCGACTCTGATCCTGAAGCTCAAGACAGTGAGATCAGCTTGGACTCTGAAAGCAAGTGTCCCAGGGATTTGGTTTGTGGAAGAAAAGTATCAAGGAGAGGTGGAGTTAGAAATATAGCCACAATCAGCTCTTCAGGAAATCCTTGCTTCAGTATCCGGATTTGCCGAAGTCATGTCAACAGAGGACCATTGCTCACACCAAGGAGCTTCCTAAGGAACATTTCCAAGCCAAAGAAGGTCAAGCTTCAAGTTGAAAATGTGTGCTGGAATGTGATCTGGTTACATCCTTACAACAAATCCAGTAGGTTCAGTGGAGGTTGGGTACCCTTTTTTAAGGAGAACAAGGTGAAAGAGGGGGATATATGTGACTTTGAGCTGATTTCAAAGTCAACTGAGGTTGCAGTGATCAAGGTTACTATTAGGAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

278

Amino Acids

31.53

Weight (kDa)

8.66

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 105	9.8e-10	B3 DNA binding domain
B3	PF02362	191 - 270	3.7e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002871)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12870 FvH4_7g12880
rosa_chinensis	RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191
rosa_laevigata	RLG00000006289 RLG00000016048 RLG00000028372
rosa_multiflora	Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009
rosa_roxburghii	Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180
rosa_rugosa	Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900
rosa_samantha	Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600
rosa_wichuraiana	Rw1G020620 Rw2G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	724
AccB1I	GGYRCC	2 cut(s)	133, 724
AccIII	TCCGGA	1 cut(s)	558
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	99, 230
AcuI	CTGAAG	4 cut(s)	137, 438, 519, 535
AfaI	GTAC	1 cut(s)	726
AgsI	TTSAA	5 cut(s)	253, 308, 650, 656, 786
AjnI	CCWGG	2 cut(s)	46, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	8 cut(s)	94, 357, 422, 441, 531, 609, 646, 778
AluI	AGCT	8 cut(s)	94, 357, 422, 441, 531, 609, 646, 778
AlwI	GGATC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	160
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	99, 230
Asp718I	GGTACC	1 cut(s)	724
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	272, 760
AvaII	GGWCC	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	614
BanI	GGYRCC	2 cut(s)	133, 724
BbsI	GAAGAC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	119, 156
BciT130I	CCWGG	2 cut(s)	48, 466
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	807
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	2 cut(s)	48, 466
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	2 cut(s)	135, 726
BmrFI	CCNGG	2 cut(s)	48, 466
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	464, 465, 602
BsaWI	WCCGGW	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bse1I	ACTGG	2 cut(s)	345, 702
Bse21I	CCTNAGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	590
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	48, 466
BseDI	CCNNGG	3 cut(s)	464, 465, 602
BseGI	GGATG	4 cut(s)	34, 73, 187, 685
BseMI	GCAATG	1 cut(s)	590
BseMII	CTCAG	2 cut(s)	152, 786
BseNI	ACTGG	2 cut(s)	345, 702
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	2 cut(s)	133, 724
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	5 cut(s)	351, 412, 435, 675, 807
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	151, 787
BspEI	TCCGGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	135, 726
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	538
BspT107I	GGYRCC	2 cut(s)	133, 724
BsrDI	GCAATG	1 cut(s)	590
BsrI	ACTGG	2 cut(s)	345, 702
BssECI	CCNNGG	3 cut(s)	464, 465, 602
BssMI	GATC	5 cut(s)	351, 412, 435, 675, 807
BssT1I	CCWWGG	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	48, 466
Bst4CI	ACNGT	2 cut(s)	329, 431
Bst6I	CTCTTC	1 cut(s)	538
BstDEI	CTNAG	4 cut(s)	138, 358, 614, 795
BstF5I	GGATG	4 cut(s)	34, 73, 187, 685
BstKTI	GATC	5 cut(s)	354, 415, 438, 678, 810
BstMBI	GATC	5 cut(s)	351, 412, 435, 675, 807
BstNI	CCWGG	2 cut(s)	48, 466
BstSCI	CCNGG	2 cut(s)	46, 464
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	472
Bsu36I	CCTNAGG	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	4 cut(s)	34, 73, 187, 685
BtsI	GCAGTG	2 cut(s)	149, 810
BtsIMutI	CAGTG	6 cut(s)	149, 325, 352, 436, 718, 810
CaiI	CAGNNNCTG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	1 cut(s)	575
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	4 cut(s)	138, 358, 614, 795
DpnI	GATC	5 cut(s)	353, 414, 437, 677, 809
DpnII	GATC	5 cut(s)	351, 412, 435, 675, 807
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	4 cut(s)	137, 438, 519, 535
Eco81I	CCTNAGG	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	46, 464
EcoT14I	CCWWGG	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	602
FaeI	CATG	1 cut(s)	578
FaiI	YATR	7 cut(s)	165, 313, 315, 518, 576, 764, 766
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	807
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	4 cut(s)	41, 80, 194, 672
Fsp4HI	GCNGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	559
Hin1II	CATG	1 cut(s)	578
HincII	GTYRAC	2 cut(s)	580, 792
HindII	GTYRAC	2 cut(s)	580, 792
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	8 cut(s)	71, 157, 263, 318, 365, 401, 407, 446
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	2 cut(s)	272, 760
Hpy166II	GTNNAC	3 cut(s)	364, 580, 792
Hpy188I	TCNGA	5 cut(s)	156, 370, 406, 412, 451
Hpy188III	TCNNGA	4 cut(s)	416, 425, 537, 559
Hpy8I	GTNNAC	3 cut(s)	364, 580, 792
HpyAV	CCTTC	1 cut(s)	631
HpyCH4III	ACNGT	2 cut(s)	329, 431
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	12, 277, 293, 803
HpyF3I	CTNAG	4 cut(s)	138, 358, 614, 795
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	578
Kpn2I	TCCGGA	1 cut(s)	558
KpnI	GGTACC	1 cut(s)	728
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	5 cut(s)	351, 412, 435, 675, 807
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	2 cut(s)	99, 606
Lsp1109I	GCAGC	1 cut(s)	24
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	3 cut(s)	681, 767, 814
MalI	GATC	5 cut(s)	353, 414, 437, 677, 809
MboI	GATC	5 cut(s)	351, 412, 435, 675, 807
MluCI	AATT	4 cut(s)	40, 99, 230, 288
MlyI	GAGTC	7 cut(s)	80, 151, 312, 359, 395, 401, 440
MmeI	TCCRAC	3 cut(s)	152, 265, 429
MnlI	CCTC	8 cut(s)	147, 220, 327, 494, 578, 710, 748, 790
MroI	TCCGGA	1 cut(s)	558
MseI	TTAA	2 cut(s)	195, 735
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	2 cut(s)	48, 466
MvaI	CCWGG	2 cut(s)	48, 466
NdeII	GATC	5 cut(s)	351, 412, 435, 675, 807
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	2 cut(s)	135, 726
NmuCI	GTSAC	1 cut(s)	767
PasI	CCCWGGG	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	7 cut(s)	79, 151, 312, 359, 395, 401, 440
PpsI	GAGTC	7 cut(s)	79, 151, 312, 359, 395, 401, 440
Psp6I	CCWGG	2 cut(s)	46, 464
PspGI	CCWGG	2 cut(s)	46, 464
PspN4I	GGNNCC	2 cut(s)	135, 726
PspPI	GGNCC	1 cut(s)	587
PstNI	CAGNNNCTG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	195, 735
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	5 cut(s)	351, 412, 435, 675, 807
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	7 cut(s)	80, 151, 312, 359, 395, 401, 440
ScrFI	CCNGG	2 cut(s)	48, 466
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	40, 99, 230, 288
StyD4I	CCNGG	2 cut(s)	46, 464
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	329, 431
TaiI	ACGT	1 cut(s)	285
TasI	AATT	4 cut(s)	40, 99, 230, 288
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	195, 735
Tru9I	TTAA	2 cut(s)	195, 735
TscAI	CASTG	6 cut(s)	149, 332, 352, 436, 718, 810
TseFI	GTSAC	1 cut(s)	767
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	6 cut(s)	149, 332, 352, 436, 718, 810
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	99, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.