B3 DNA binding domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g12870 FvH4_7g12880 |
| rosa_chinensis | RchiOBHm_Chr1g0351951 RchiOBHm_Chr2g0089651 RchiOBHm_Chr2g0123231 RchiOBHm_Chr4g0439191 |
| rosa_laevigata | RLG00000006289 RLG00000016048 RLG00000028372 |
| rosa_multiflora | Rmu_sc0000665.1_g000025 Rmu_sc0002236.1_g000010 Rmu_sc0007728.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00151690 Rroxscaffold_4G00303430 Rroxscaffold_5G00380180 |
| rosa_rugosa | Rorug01G0223100 Rorug02G0002200 Rorug02G0002300 Rorug02G0002400 Rorug04G0316500.1 Rorug04G0316600 Rorug04G0316700 Rorug04G0316800 Rorug04G0316800 Rorug04G0316900 |
| rosa_samantha | Rh1AG237100 Rh1BG207300 Rh1CG221500 Rh1DG234300 Rh2AG047700 Rh2BG046300 Rh2CG048300 Rh2DG047700 Rh4AG367400 Rh4BG379000 Rh4CG393400 Rh4DG373600 |
| rosa_wichuraiana | Rw1G020620 Rw2G004280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 853 |
| Acc36I | ACCTGC | 1 cut(s) | 1088 |
| AccI | GTMKAC | 1 cut(s) | 2054 |
| AccIII | TCCGGA | 1 cut(s) | 1022 |
| AciI | CCGC | 5 cut(s) | 11, 338, 1230, 2505, 2620 |
| AclWI | GGATC | 1 cut(s) | 1771 |
| AcsI | RAATTY | 2 cut(s) | 1039, 2184 |
| AcuI | CTGAAG | 5 cut(s) | 444, 1070, 1335, 1765, 2585 |
| AcvI | CACGTG | 1 cut(s) | 2749 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 2025, 2458, 2569 |
| AflII | CTTAAG | 1 cut(s) | 1861 |
| AflIII | ACRYGT | 1 cut(s) | 1512 |
| AleI | CACNNNNGTG | 1 cut(s) | 437 |
| Alw21I | GWGCWC | 2 cut(s) | 285, 1125 |
| AlwI | GGATC | 1 cut(s) | 1771 |
| Aor13HI | TCCGGA | 1 cut(s) | 1022 |
| AoxI | GGCC | 2 cut(s) | 1210, 2580 |
| ApeKI | GCWGC | 9 cut(s) | 203, 451, 454, 643, 866, 1227, 1403, 2202, 2428 |
| ApoI | RAATTY | 2 cut(s) | 1039, 2184 |
| AseI | ATTAAT | 1 cut(s) | 119 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 128, 171, 472, 1671 |
| AspA2I | CCTAGG | 1 cut(s) | 1912 |
| AspLEI | GCGC | 1 cut(s) | 2049 |
| AspS9I | GGNCC | 4 cut(s) | 1855, 2028, 2560, 2580 |
| AsuHPI | GGTGA | 3 cut(s) | 346, 779, 901 |
| AsuII | TTCGAA | 1 cut(s) | 1630 |
| AvaII | GGWCC | 3 cut(s) | 1855, 2028, 2560 |
| AvrII | CCTAGG | 1 cut(s) | 1912 |
| AxyI | CCTNAGG | 1 cut(s) | 2135 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 605, 638, 2253, 2286 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1884, 1916 |
| BauI | CACGAG | 1 cut(s) | 2767 |
| BbrPI | CACGTG | 1 cut(s) | 2749 |
| BbsI | GAAGAC | 3 cut(s) | 605, 1639, 2636 |
| Bbv12I | GWGCWC | 2 cut(s) | 285, 1125 |
| BbvCI | CCTCAGC | 1 cut(s) | 6 |
| BbvI | GCAGC | 9 cut(s) | 190, 463, 466, 655, 853, 1239, 1415, 2214, 2415 |
| BccI | CCATC | 7 cut(s) | 577, 1121, 1912, 1984, 2207, 2449, 2636 |
| BceAI | ACGGC | 1 cut(s) | 2583 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1497, 1531 |
| BciVI | GTATCC | 1 cut(s) | 2142 |
| BfaI | CTAG | 5 cut(s) | 1913, 2420, 2661, 2691, 2779 |
| BfmI | CTRYAG | 2 cut(s) | 1611, 2328 |
| BfrI | CTTAAG | 1 cut(s) | 1861 |
| BfuAI | ACCTGC | 1 cut(s) | 1088 |
| BfuI | GTATCC | 1 cut(s) | 2142 |
| BglII | AGATCT | 1 cut(s) | 711 |
| BlnI | CCTAGG | 1 cut(s) | 1912 |
| BmcAI | AGTACT | 4 cut(s) | 408, 421, 1091, 1952 |
| Bme18I | GGWCC | 3 cut(s) | 1855, 2028, 2560 |
| BmgT120I | GGNCC | 4 cut(s) | 1855, 2028, 2560, 2580 |
| BmiI | GGNNCC | 3 cut(s) | 1674, 1685, 2581 |
| BmrI | ACTGGG | 2 cut(s) | 1721, 2153 |
| BmsI | GCATC | 5 cut(s) | 130, 136, 1071, 1388, 1390 |
| BmuI | ACTGGG | 2 cut(s) | 1721, 2153 |
| BpiI | GAAGAC | 3 cut(s) | 605, 1639, 2636 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 306, 338 |
| BpmI | CTGGAG | 2 cut(s) | 1532, 2485 |
| Bpu10I | CCTNAGC | 1 cut(s) | 6 |
| Bpu14I | TTCGAA | 1 cut(s) | 1630 |
| BpuEI | CTTGAG | 3 cut(s) | 269, 2381, 2651 |
| BsaAI | YACGTR | 1 cut(s) | 2749 |
| BsaI | GGTCTC | 1 cut(s) | 1713 |
| BsaJI | CCNNGG | 1 cut(s) | 1912 |
| BsaWI | WCCGGW | 1 cut(s) | 1022 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 2025, 2458, 2569 |
| Bse1I | ACTGG | 3 cut(s) | 1331, 1727, 2148 |
| Bse21I | CCTNAGG | 1 cut(s) | 2135 |
| Bse3DI | GCAATG | 1 cut(s) | 2691 |
| BseAI | TCCGGA | 1 cut(s) | 1022 |
| BseDI | CCNNGG | 1 cut(s) | 1912 |
| BseGI | GGATG | 5 cut(s) | 51, 588, 1405, 1904, 2035 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 2025, 2458, 2569 |
| BseMI | GCAATG | 1 cut(s) | 2691 |
| BseMII | CTCAG | 9 cut(s) | 99, 365, 475, 1413, 1901, 1991, 2112, 2126, 2639 |
| BseNI | ACTGG | 3 cut(s) | 1331, 1727, 2148 |
| BseRI | GAGGAG | 4 cut(s) | 524, 1550, 2474, 2736 |
| BseXI | GCAGC | 9 cut(s) | 190, 463, 466, 655, 853, 1239, 1415, 2214, 2415 |
| BseYI | CCCAGC | 1 cut(s) | 37 |
| BsgI | GTGCAG | 1 cut(s) | 1116 |
| BshFI | GGCC | 2 cut(s) | 1212, 2582 |
| BsiHKAI | GWGCWC | 2 cut(s) | 285, 1125 |
| BsiSI | CCGG | 1 cut(s) | 1023 |
| BslFI | GGGAC | 2 cut(s) | 279, 859 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 2025, 2458, 2569 |
| BsmBI | CGTCTC | 1 cut(s) | 690 |
| BsmFI | GGGAC | 2 cut(s) | 279, 859 |
| BsmI | GAATGC | 4 cut(s) | 937, 1229, 1737, 2217 |
| BsnI | GGCC | 2 cut(s) | 1212, 2582 |
| Bso31I | GGTCTC | 1 cut(s) | 1713 |
| Bsp119I | TTCGAA | 1 cut(s) | 1630 |
| Bsp1286I | GDGCHC | 2 cut(s) | 285, 1125 |
| Bsp13I | TCCGGA | 1 cut(s) | 1022 |
| Bsp1407I | TGTACA | 2 cut(s) | 793, 2604 |
| BspACI | CCGC | 5 cut(s) | 11, 338, 1230, 2505, 2620 |
| BspANI | GGCC | 2 cut(s) | 1212, 2582 |
| BspCNI | CTCAG | 9 cut(s) | 100, 366, 474, 1414, 1900, 1992, 2113, 2127, 2640 |
| BspEI | TCCGGA | 1 cut(s) | 1022 |
| BspHI | TCATGA | 3 cut(s) | 625, 1495, 2350 |
| BspLI | GGNNCC | 3 cut(s) | 1674, 1685, 2581 |
| BspMI | ACCTGC | 1 cut(s) | 1088 |
| BspPI | GGATC | 1 cut(s) | 1771 |
| BspT104I | TTCGAA | 1 cut(s) | 1630 |
| BspTI | CTTAAG | 1 cut(s) | 1861 |
| BspTNI | GGTCTC | 1 cut(s) | 1713 |
| BsrDI | GCAATG | 1 cut(s) | 2691 |
| BsrGI | TGTACA | 2 cut(s) | 793, 2604 |
| BsrI | ACTGG | 3 cut(s) | 1331, 1727, 2148 |
| BssECI | CCNNGG | 1 cut(s) | 1912 |
| BssSI | CACGAG | 1 cut(s) | 2767 |
| BssT1I | CCWWGG | 1 cut(s) | 1912 |
| Bst2BI | CACGAG | 1 cut(s) | 2767 |
| Bst6I | CTCTTC | 4 cut(s) | 702, 738, 965, 1021 |
| BstAFI | CTTAAG | 1 cut(s) | 1861 |
| BstAUI | TGTACA | 2 cut(s) | 793, 2604 |
| BstBAI | YACGTR | 1 cut(s) | 2749 |
| BstBI | TTCGAA | 1 cut(s) | 1630 |
| BstC8I | GCNNGC | 5 cut(s) | 99, 253, 995, 1125, 2708 |
| BstEII | GGTNACC | 1 cut(s) | 1600 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2456 |
| BstF5I | GGATG | 5 cut(s) | 51, 588, 1405, 1904, 2035 |
| BstHHI | GCGC | 1 cut(s) | 2049 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 463, 2425 |
| BstNSI | RCATGY | 2 cut(s) | 304, 1516 |
| BstPI | GGTNACC | 1 cut(s) | 1600 |
| BstSFI | CTRYAG | 2 cut(s) | 1611, 2328 |
| BstV1I | GCAGC | 9 cut(s) | 190, 463, 466, 655, 853, 1239, 1415, 2214, 2415 |
| BstV2I | GAAGAC | 3 cut(s) | 605, 1639, 2636 |
| BstX2I | RGATCY | 1 cut(s) | 711 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 332 |
| BstYI | RGATCY | 1 cut(s) | 711 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2135 |
| BsuI | GTATCC | 1 cut(s) | 2142 |
| BsuRI | GGCC | 2 cut(s) | 1212, 2582 |
| BtsCI | GGATG | 5 cut(s) | 51, 588, 1405, 1904, 2035 |
| BtsIMutI | CAGTG | 3 cut(s) | 1116, 1338, 2386 |
| BveI | ACCTGC | 1 cut(s) | 1088 |
| Cac8I | GCNNGC | 5 cut(s) | 99, 253, 995, 1125, 2708 |
| CciI | TCATGA | 3 cut(s) | 625, 1495, 2350 |
| CfoI | GCGC | 1 cut(s) | 2049 |
| Cfr13I | GGNCC | 4 cut(s) | 1855, 2028, 2560, 2580 |
| DraI | TTTAAA | 1 cut(s) | 1947 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 853 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 853 |
| Eam1104I | CTCTTC | 4 cut(s) | 702, 738, 965, 1021 |
| EarI | CTCTTC | 4 cut(s) | 702, 738, 965, 1021 |
| EciI | GGCGGA | 1 cut(s) | 353 |
| Eco130I | CCWWGG | 1 cut(s) | 1912 |
| Eco31I | GGTCTC | 1 cut(s) | 1713 |
| Eco47I | GGWCC | 3 cut(s) | 1855, 2028, 2560 |
| Eco57I | CTGAAG | 5 cut(s) | 444, 1070, 1335, 1765, 2585 |
| Eco72I | CACGTG | 1 cut(s) | 2749 |
| Eco81I | CCTNAGG | 1 cut(s) | 2135 |
| Eco91I | GGTNACC | 1 cut(s) | 1600 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2456 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2560 |
| EcoO65I | GGTNACC | 1 cut(s) | 1600 |
| EcoT14I | CCWWGG | 1 cut(s) | 1912 |
| ErhI | CCWWGG | 1 cut(s) | 1912 |
| Esp3I | CGTCTC | 1 cut(s) | 690 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 81, 113 |
| FaqI | GGGAC | 2 cut(s) | 279, 859 |
| FauNDI | CATATG | 1 cut(s) | 833 |
| FblI | GTMKAC | 1 cut(s) | 2054 |
| FokI | GGATG | 5 cut(s) | 38, 595, 1412, 1891, 2022 |
| FspBI | CTAG | 5 cut(s) | 1913, 2420, 2661, 2691, 2779 |
| GlaI | GCGC | 1 cut(s) | 2048 |
| GsaI | CCCAGC | 1 cut(s) | 41 |
| GsuI | CTGGAG | 2 cut(s) | 1532, 2485 |
| HaeIII | GGCC | 2 cut(s) | 1212, 2582 |
| HapII | CCGG | 1 cut(s) | 1023 |
| HhaI | GCGC | 1 cut(s) | 2049 |
| Hin6I | GCGC | 1 cut(s) | 2047 |
| HinP1I | GCGC | 1 cut(s) | 2047 |
| HindIII | AAGCTT | 1 cut(s) | 782 |
| HinfI | GANTC | 9 cut(s) | 78, 348, 653, 854, 1047, 1319, 1345, 1873, 2590 |
| HpaII | CCGG | 1 cut(s) | 1023 |
| HphI | GGTGA | 3 cut(s) | 346, 779, 901 |
| Hpy166II | GTNNAC | 3 cut(s) | 1858, 2055, 2386 |
| Hpy188I | TCNGA | 9 cut(s) | 197, 347, 375, 861, 943, 1324, 1784, 2104, 2122 |
| Hpy8I | GTNNAC | 3 cut(s) | 1858, 2055, 2386 |
| HpyCH4IV | ACGT | 3 cut(s) | 268, 699, 2748 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 463, 2425 |
| HpySE526I | ACGT | 3 cut(s) | 268, 699, 2748 |
| HspAI | GCGC | 1 cut(s) | 2047 |
| Kpn2I | TCCGGA | 1 cut(s) | 1022 |
| Lsp1109I | GCAGC | 9 cut(s) | 190, 463, 466, 655, 853, 1239, 1415, 2214, 2415 |
| LweI | GCATC | 5 cut(s) | 130, 136, 1071, 1388, 1390 |
| MaeI | CTAG | 5 cut(s) | 1913, 2420, 2661, 2691, 2779 |
| MaeII | ACGT | 3 cut(s) | 268, 699, 2748 |
| MaeIII | GTNAC | 7 cut(s) | 430, 1600, 1816, 1891, 2155, 2269, 2656 |
| MflI | RGATCY | 1 cut(s) | 711 |
| MhlI | GDGCHC | 2 cut(s) | 285, 1125 |
| MlyI | GAGTC | 6 cut(s) | 87, 357, 863, 1339, 1882, 2599 |
| MmeI | TCCRAC | 4 cut(s) | 486, 984, 2157, 2698 |
| MroI | TCCGGA | 1 cut(s) | 1022 |
| MroXI | GAANNNNTTC | 4 cut(s) | 128, 171, 472, 1671 |
| MslI | CAYNNNNRTG | 4 cut(s) | 437, 630, 1118, 1494 |
| MspA1I | CMGCKG | 2 cut(s) | 1230, 2505 |
| MspCI | CTTAAG | 1 cut(s) | 1861 |
| MspI | CCGG | 1 cut(s) | 1023 |
| Mva1269I | GAATGC | 4 cut(s) | 937, 1229, 1737, 2217 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 463, 2425 |
| NdeI | CATATG | 1 cut(s) | 833 |
| NlaIV | GGNNCC | 3 cut(s) | 1674, 1685, 2581 |
| NmeAIII | GCCGAG | 1 cut(s) | 2613 |
| NmuCI | GTSAC | 2 cut(s) | 430, 2155 |
| NspI | RCATGY | 2 cut(s) | 304, 1516 |
| NspV | TTCGAA | 1 cut(s) | 1630 |
| OliI | CACNNNNGTG | 1 cut(s) | 437 |
| PagI | TCATGA | 3 cut(s) | 625, 1495, 2350 |
| PciI | ACATGT | 1 cut(s) | 1512 |
| PctI | GAATGC | 4 cut(s) | 937, 1229, 1737, 2217 |
| PdmI | GAANNNNTTC | 4 cut(s) | 128, 171, 472, 1671 |
| PfeI | GAWTC | 3 cut(s) | 653, 1047, 1319 |
| PleI | GAGTC | 6 cut(s) | 86, 356, 862, 1339, 1881, 2598 |
| PmaCI | CACGTG | 1 cut(s) | 2749 |
| PmlI | CACGTG | 1 cut(s) | 2749 |
| PpsI | GAGTC | 6 cut(s) | 86, 356, 862, 1339, 1881, 2598 |
| Ppu21I | YACGTR | 1 cut(s) | 2749 |
| PpuMI | RGGWCCY | 1 cut(s) | 2560 |
| PscI | ACATGT | 1 cut(s) | 1512 |
| PshBI | ATTAAT | 1 cut(s) | 119 |
| Psp5II | RGGWCCY | 1 cut(s) | 2560 |
| PspCI | CACGTG | 1 cut(s) | 2749 |
| PspEI | GGTNACC | 1 cut(s) | 1600 |
| PspFI | CCCAGC | 1 cut(s) | 37 |
| PspN4I | GGNNCC | 3 cut(s) | 1674, 1685, 2581 |
| PspPI | GGNCC | 4 cut(s) | 1855, 2028, 2560, 2580 |
| PspPPI | RGGWCCY | 1 cut(s) | 2560 |
| PsuI | RGATCY | 1 cut(s) | 711 |
| RseI | CAYNNNNRTG | 4 cut(s) | 437, 630, 1118, 1494 |
| Sau96I | GGNCC | 4 cut(s) | 1855, 2028, 2560, 2580 |
| ScaI | AGTACT | 4 cut(s) | 408, 421, 1091, 1952 |
| SchI | GAGTC | 6 cut(s) | 87, 357, 863, 1339, 1882, 2599 |
| SduI | GDGCHC | 2 cut(s) | 285, 1125 |
| SfaNI | GCATC | 5 cut(s) | 130, 136, 1071, 1388, 1390 |
| SfcI | CTRYAG | 2 cut(s) | 1611, 2328 |
| SfuI | TTCGAA | 1 cut(s) | 1630 |
| SinI | GGWCC | 3 cut(s) | 1855, 2028, 2560 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 437, 630, 1118, 1494 |
| SmlI | CTYRAG | 4 cut(s) | 284, 1861, 2396, 2666 |
| SmoI | CTYRAG | 4 cut(s) | 284, 1861, 2396, 2666 |
| SsiI | CCGC | 5 cut(s) | 11, 338, 1230, 2505, 2620 |
| SspI | AATATT | 2 cut(s) | 364, 903 |
| SspMI | CTAG | 5 cut(s) | 1913, 2420, 2661, 2691, 2779 |
| StyI | CCWWGG | 1 cut(s) | 1912 |
| TaiI | ACGT | 3 cut(s) | 271, 702, 2751 |
| TaqI | TCGA | 6 cut(s) | 380, 970, 1630, 1792, 2221, 2469 |
| TaqII | GACCGA | 1 cut(s) | 1695 |
| TatI | WGTACW | 9 cut(s) | 406, 419, 793, 1089, 1716, 1950, 2472, 2604, 2761 |
| TauI | GCSGC | 1 cut(s) | 2622 |
| TfiI | GAWTC | 3 cut(s) | 653, 1047, 1319 |
| TscAI | CASTG | 3 cut(s) | 1123, 1338, 2393 |
| TseFI | GTSAC | 2 cut(s) | 430, 2155 |
| TseI | GCWGC | 9 cut(s) | 203, 451, 454, 643, 866, 1227, 1403, 2202, 2428 |
| Tsp45I | GTSAC | 2 cut(s) | 430, 2155 |
| TspRI | CASTG | 3 cut(s) | 1123, 1338, 2393 |
| Vha464I | CTTAAG | 1 cut(s) | 1861 |
| VpaK11BI | GGWCC | 3 cut(s) | 1855, 2028, 2560 |
| VspI | ATTAAT | 1 cut(s) | 119 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2456 |
| XapI | RAATTY | 2 cut(s) | 1039, 2184 |
| XceI | RCATGY | 2 cut(s) | 304, 1516 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1980 |
| XmaJI | CCTAGG | 1 cut(s) | 1912 |
| XmiI | GTMKAC | 1 cut(s) | 2054 |
| XmnI | GAANNNNTTC | 4 cut(s) | 128, 171, 472, 1671 |
| XspI | CTAG | 5 cut(s) | 1913, 2420, 2661, 2691, 2779 |
| ZrmI | AGTACT | 4 cut(s) | 408, 421, 1091, 1952 |