FvH4_7g21810

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000853
Physical Location & Seq
Reverse (-)
17364660 .. 17366017
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21810.t1

Sequence Viewer

Length: 369 bp
ATGGTGCTGTATTTGCAGACCTTTGCCATTGACAAGTTCATAAACAGTAACCAACACAACCTCGGCTCCGCTGTCTATGGCCCCACGTGGCGCCTCTTCCGCCGCAAACTGACCTCCGAGTTCCTCCACCCTGAATTCTTGTGTCAAGTCTTATATATGGTGGCGCTCGCAAAAGGGTATGTGGGAGTGTGGGACTTCGGCCCACGCCAACTGGGCTTCAAGGAGGAGCGGGACCACAAGAAGAGGAGGTCGTCGAGGAACGTGACTGAGGAAATCGCCGAGTACTTGGCTAAGAAGGCAGCTCGAGTAGCTAAGAAGCTGAAAAGTGGGCTATATCTCGAGCTAGCCTCATCTGAGTCATCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204
Pfam Domains
Protein Families
p450

Protein Analysis

123

Amino Acids

14.13

Weight (kDa)

9.85

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 229
AciI CCGC 4 cut(s) 69, 100, 103, 229
AcsI RAATTY 1 cut(s) 134
AcvI CACGTG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 1 cut(s) 284
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 4 cut(s) 302, 311, 319, 343
AluI AGCT 4 cut(s) 302, 311, 319, 343
Ama87I CYCGRG 2 cut(s) 303, 338
AoxI GGCC 2 cut(s) 79, 199
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 2 cut(s) 93, 166
AspS9I GGNCC 3 cut(s) 80, 200, 232
AsuNHI GCTAGC 1 cut(s) 343
AvaI CYCGRG 2 cut(s) 303, 338
AvaII GGWCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 90
BbrPI CACGTG 1 cut(s) 87
BbvI GCAGC 1 cut(s) 311
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 2 cut(s) 94, 167
BglI GCCNNNNNGGC 1 cut(s) 213
BisI GCNGC 2 cut(s) 103, 300
BlsI GCNGC 2 cut(s) 104, 301
BmcAI AGTACT 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 2 cut(s) 303, 338
BmgT120I GGNCC 3 cut(s) 80, 200, 232
BmiI GGNNCC 4 cut(s) 67, 82, 92, 233
BmrI ACTGGG 1 cut(s) 221
BmtI GCTAGC 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 221
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BsaAI YACGTR 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse1I ACTGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 258, 345
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 239, 259
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 2 cut(s) 81, 201
BshNI GGYRCC 1 cut(s) 90
BsiHKCI CYCGRG 2 cut(s) 303, 338
BslFI GGGAC 2 cut(s) 206, 245
BsmFI GGGAC 2 cut(s) 206, 245
BsnI GGCC 2 cut(s) 81, 201
BsoBI CYCGRG 2 cut(s) 303, 338
BspACI CCGC 4 cut(s) 69, 100, 103, 229
BspANI GGCC 2 cut(s) 81, 201
BspCNI CTCAG 2 cut(s) 259, 346
BspLI GGNNCC 4 cut(s) 67, 82, 92, 233
BspOI GCTAGC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 90
BsrBI CCGCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 2 cut(s) 101, 236
BstACI GRCGYC 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 168, 345
BstDEI CTNAG 4 cut(s) 267, 291, 312, 354
BstH2I RGCGCY 2 cut(s) 94, 167
BstHHI GCGC 2 cut(s) 93, 166
BstMWI GCNNNNNNNGC 5 cut(s) 13, 99, 213, 296, 308
BstV1I GCAGC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 81, 201
Cac8I GCNNGC 2 cut(s) 168, 345
CfoI GCGC 2 cut(s) 93, 166
Cfr13I GGNCC 3 cut(s) 80, 200, 232
Csp6I GTAC 1 cut(s) 283
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 4 cut(s) 267, 291, 312, 354
DinI GGCGCC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 101, 236
EarI CTCTTC 2 cut(s) 101, 236
EciI GGCGGA 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 87
Eco88I CYCGRG 2 cut(s) 303, 338
EcoRI GAATTC 1 cut(s) 134
EgeI GGCGCC 1 cut(s) 92
EheI GGCGCC 1 cut(s) 92
FaiI YATR 7 cut(s) 41, 78, 154, 156, 158, 180, 334
FaqI GGGAC 2 cut(s) 206, 245
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 103, 300
Fsp4HI GCNGC 2 cut(s) 103, 300
FspBI CTAG 1 cut(s) 344
GlaI GCGC 2 cut(s) 92, 165
GluI GCNGC 2 cut(s) 103, 300
HaeII RGCGCY 2 cut(s) 94, 167
HaeIII GGCC 2 cut(s) 81, 201
HhaI GCGC 2 cut(s) 93, 166
Hin1I GRCGYC 1 cut(s) 91
Hin6I GCGC 2 cut(s) 91, 164
HinP1I GCGC 2 cut(s) 91, 164
HinfI GANTC 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 118, 355
Hpy188III TCNNGA 1 cut(s) 338
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 86, 261
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 99, 213, 296, 308
HpyF3I CTNAG 4 cut(s) 267, 291, 312, 354
HpySE526I ACGT 2 cut(s) 86, 261
Hsp92I GRCGYC 1 cut(s) 91
HspAI GCGC 2 cut(s) 91, 164
KasI GGCGCC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 71, 226
LpnPI CCDG 2 cut(s) 144, 197
Lsp1109I GCAGC 1 cut(s) 311
MaeI CTAG 1 cut(s) 344
MaeII ACGT 2 cut(s) 86, 261
MaeIII GTNAC 2 cut(s) 47, 262
MbiI CCGCTC 1 cut(s) 229
MboII GAAGA 2 cut(s) 88, 253
MluCI AATT 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 91
MlyI GAGTC 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 71
MwoI GCNNNNNNNGC 5 cut(s) 13, 99, 213, 296, 308
NarI GGCGCC 1 cut(s) 91
NheI GCTAGC 1 cut(s) 343
NlaIV GGNNCC 4 cut(s) 67, 82, 92, 233
NmeAIII GCCGAG 2 cut(s) 42, 304
NmuCI GTSAC 1 cut(s) 262
PaeR7I CTCGAG 2 cut(s) 303, 338
PkrI GCNGC 2 cut(s) 104, 301
PleI GAGTC 1 cut(s) 364
PluTI GGCGCC 1 cut(s) 94
PmaCI CACGTG 1 cut(s) 87
PmlI CACGTG 1 cut(s) 87
PpsI GAGTC 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 87
PspCI CACGTG 1 cut(s) 87
PspN4I GGNNCC 4 cut(s) 67, 82, 92, 233
PspPI GGNCC 3 cut(s) 80, 200, 232
PspXI VCTCGAGB 1 cut(s) 303
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SatI GCNGC 2 cut(s) 103, 300
Sau96I GGNCC 3 cut(s) 80, 200, 232
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 1 cut(s) 365
SfoI GGCGCC 1 cut(s) 92
Sfr274I CTCGAG 2 cut(s) 303, 338
SinI GGWCC 1 cut(s) 232
SlaI CTCGAG 2 cut(s) 303, 338
SmlI CTYRAG 2 cut(s) 303, 338
SmoI CTYRAG 2 cut(s) 303, 338
Sse9I AATT 1 cut(s) 134
SsiI CCGC 4 cut(s) 69, 100, 103, 229
SspDI GGCGCC 1 cut(s) 90
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 2 cut(s) 89, 264
TaqI TCGA 3 cut(s) 254, 304, 339
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 282
TauI GCSGC 1 cut(s) 105
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 134
XhoI CTCGAG 2 cut(s) 303, 338
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.