Cytochrome p450
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 482, 929 |
| AbsI | CCTCGAGG | 1 cut(s) | 743 |
| AccB1I | GGYRCC | 4 cut(s) | 390, 962, 1062, 1132 |
| AccBSI | CCGCTC | 3 cut(s) | 117, 261, 664 |
| AccI | GTMKAC | 2 cut(s) | 375, 860 |
| AccII | CGCG | 3 cut(s) | 438, 633, 1097 |
| AccIII | TCCGGA | 2 cut(s) | 150, 233 |
| AclWI | GGATC | 3 cut(s) | 733, 1000, 1310 |
| AcoI | YGGCCR | 4 cut(s) | 324, 810, 998, 1350 |
| AcsI | RAATTY | 3 cut(s) | 728, 845, 1367 |
| AcyI | GRCGYC | 4 cut(s) | 391, 531, 828, 1063 |
| AdeI | CACNNNGTG | 4 cut(s) | 1084, 1099, 1111, 1132 |
| AfaI | GTAC | 1 cut(s) | 338 |
| AgeI | ACCGGT | 1 cut(s) | 717 |
| AgsI | TTSAA | 4 cut(s) | 670, 685, 736, 1213 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 242 |
| AjiI | CACGTC | 2 cut(s) | 1111, 1399 |
| AjnI | CCWGG | 5 cut(s) | 8, 192, 273, 573, 1309 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 8 cut(s) | 100, 138, 169, 366, 886, 913, 1024, 1382 |
| AluI | AGCT | 8 cut(s) | 100, 138, 169, 366, 886, 913, 1024, 1382 |
| Alw21I | GWGCWC | 1 cut(s) | 171 |
| Alw26I | GTCTC | 3 cut(s) | 166, 510, 588 |
| AlwI | GGATC | 3 cut(s) | 733, 1000, 1310 |
| Ama87I | CYCGRG | 1 cut(s) | 743 |
| Aor13HI | TCCGGA | 2 cut(s) | 150, 233 |
| ApaI | GGGCCC | 1 cut(s) | 210 |
| ApeKI | GCWGC | 5 cut(s) | 135, 345, 871, 1024, 1330 |
| ApoI | RAATTY | 3 cut(s) | 728, 845, 1367 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 600, 632, 830, 862 |
| AsiGI | ACCGGT | 1 cut(s) | 717 |
| AspLEI | GCGC | 7 cut(s) | 296, 393, 633, 642, 1065, 1078, 1093 |
| AsuC2I | CCSGG | 1 cut(s) | 108 |
| AsuHPI | GGTGA | 2 cut(s) | 403, 1111 |
| AvaI | CYCGRG | 1 cut(s) | 743 |
| AvaII | GGWCC | 7 cut(s) | 196, 236, 380, 1012, 1180, 1198, 1402 |
| BaeGI | GKGCMC | 3 cut(s) | 210, 784, 1137 |
| BalI | TGGCCA | 4 cut(s) | 326, 812, 1000, 1352 |
| BanI | GGYRCC | 4 cut(s) | 390, 962, 1062, 1132 |
| BanII | GRGCYC | 2 cut(s) | 171, 210 |
| BbsI | GAAGAC | 1 cut(s) | 238 |
| Bbv12I | GWGCWC | 1 cut(s) | 171 |
| BbvI | GCAGC | 5 cut(s) | 147, 357, 858, 1011, 1317 |
| BccI | CCATC | 4 cut(s) | 92, 128, 134, 218 |
| BceAI | ACGGC | 7 cut(s) | 281, 356, 466, 910, 1012, 1025, 1267 |
| BciT130I | CCWGG | 5 cut(s) | 10, 194, 275, 575, 1311 |
| BcnI | CCSGG | 1 cut(s) | 108 |
| BcoDI | GTCTC | 3 cut(s) | 166, 510, 588 |
| BfaI | CTAG | 1 cut(s) | 875 |
| BfmI | CTRYAG | 2 cut(s) | 985, 1428 |
| BfoI | RGCGCY | 4 cut(s) | 297, 394, 643, 1066 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 275 |
| BisI | GCNGC | 9 cut(s) | 136, 346, 403, 526, 529, 872, 1025, 1061, 1331 |
| BlsI | GCNGC | 9 cut(s) | 137, 347, 404, 527, 530, 873, 1026, 1062, 1332 |
| Bme1390I | CCNGG | 6 cut(s) | 10, 108, 194, 275, 575, 1311 |
| Bme18I | GGWCC | 7 cut(s) | 196, 236, 380, 1012, 1180, 1198, 1402 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 242 |
| BmeT110I | CYCGRG | 1 cut(s) | 743 |
| BmgBI | CACGTC | 2 cut(s) | 1111, 1399 |
| BmrFI | CCNGG | 6 cut(s) | 10, 108, 194, 275, 575, 1311 |
| BmsI | GCATC | 3 cut(s) | 828, 1269, 1342 |
| BpiI | GAAGAC | 1 cut(s) | 238 |
| BpmI | CTGGAG | 3 cut(s) | 176, 866, 1358 |
| BpuEI | CTTGAG | 2 cut(s) | 155, 1450 |
| BpuMI | CCSGG | 1 cut(s) | 108 |
| BsaHI | GRCGYC | 4 cut(s) | 391, 531, 828, 1063 |
| BsaJI | CCNNGG | 3 cut(s) | 321, 1203, 1310 |
| BsaWI | WCCGGW | 3 cut(s) | 150, 233, 717 |
| Bse118I | RCCGGY | 3 cut(s) | 316, 717, 1072 |
| Bse3DI | GCAATG | 1 cut(s) | 1445 |
| BseAI | TCCGGA | 2 cut(s) | 150, 233 |
| BseBI | CCWGG | 5 cut(s) | 10, 194, 275, 575, 1311 |
| BseDI | CCNNGG | 3 cut(s) | 321, 1203, 1310 |
| BseGI | GGATG | 5 cut(s) | 120, 180, 282, 477, 1281 |
| BseMI | GCAATG | 1 cut(s) | 1445 |
| BseMII | CTCAG | 3 cut(s) | 521, 996, 1422 |
| BseRI | GAGGAG | 6 cut(s) | 38, 386, 698, 1022, 1312, 1433 |
| BseSI | GKGCMC | 3 cut(s) | 210, 784, 1137 |
| BseXI | GCAGC | 5 cut(s) | 147, 357, 858, 1011, 1317 |
| Bsh1236I | CGCG | 3 cut(s) | 438, 633, 1097 |
| Bsh1285I | CGRYCG | 1 cut(s) | 259 |
| BshNI | GGYRCC | 4 cut(s) | 390, 962, 1062, 1132 |
| BshTI | ACCGGT | 1 cut(s) | 717 |
| BsiEI | CGRYCG | 1 cut(s) | 259 |
| BsiHKAI | GWGCWC | 1 cut(s) | 171 |
| BsiHKCI | CYCGRG | 1 cut(s) | 743 |
| BsiSI | CCGG | 7 cut(s) | 108, 151, 234, 317, 718, 1073, 1217 |
| BslFI | GGGAC | 5 cut(s) | 5, 366, 496, 752, 1193 |
| BsmAI | GTCTC | 3 cut(s) | 166, 510, 588 |
| BsmBI | CGTCTC | 1 cut(s) | 166 |
| BsmFI | GGGAC | 5 cut(s) | 5, 366, 496, 752, 1193 |
| BsoBI | CYCGRG | 1 cut(s) | 743 |
| Bsp120I | GGGCCC | 1 cut(s) | 206 |
| Bsp1286I | GDGCHC | 4 cut(s) | 171, 210, 784, 1137 |
| Bsp13I | TCCGGA | 2 cut(s) | 150, 233 |
| Bsp143I | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| Bsp19I | CCATGG | 1 cut(s) | 1203 |
| BspCNI | CTCAG | 3 cut(s) | 520, 997, 1421 |
| BspEI | TCCGGA | 2 cut(s) | 150, 233 |
| BspFNI | CGCG | 3 cut(s) | 438, 633, 1097 |
| BspMAI | CTGCAG | 1 cut(s) | 989 |
| BspPI | GGATC | 3 cut(s) | 733, 1000, 1310 |
| BspQI | GCTCTTC | 1 cut(s) | 603 |
| BspT107I | GGYRCC | 4 cut(s) | 390, 962, 1062, 1132 |
| BsrBI | CCGCTC | 3 cut(s) | 117, 261, 664 |
| BsrDI | GCAATG | 1 cut(s) | 1445 |
| BsrFI | RCCGGY | 3 cut(s) | 316, 717, 1072 |
| BssAI | RCCGGY | 3 cut(s) | 316, 717, 1072 |
| BssECI | CCNNGG | 3 cut(s) | 321, 1203, 1310 |
| BssMI | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| BssNAI | GTATAC | 1 cut(s) | 861 |
| BssNI | GRCGYC | 4 cut(s) | 391, 531, 828, 1063 |
| BssT1I | CCWWGG | 2 cut(s) | 321, 1203 |
| Bst1107I | GTATAC | 1 cut(s) | 861 |
| Bst2UI | CCWGG | 5 cut(s) | 10, 194, 275, 575, 1311 |
| Bst4CI | ACNGT | 2 cut(s) | 380, 1429 |
| Bst6I | CTCTTC | 1 cut(s) | 603 |
| BstACI | GRCGYC | 4 cut(s) | 391, 531, 828, 1063 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1084 |
| BstC8I | GCNNGC | 9 cut(s) | 460, 810, 961, 985, 1058, 1074, 1089, 1095, 1452 |
| BstDEI | CTNAG | 3 cut(s) | 507, 1005, 1408 |
| BstDSI | CCRYGG | 1 cut(s) | 1203 |
| BstF5I | GGATG | 5 cut(s) | 120, 180, 282, 477, 1281 |
| BstFNI | CGCG | 3 cut(s) | 438, 633, 1097 |
| BstH2I | RGCGCY | 4 cut(s) | 297, 394, 643, 1066 |
| BstHHI | GCGC | 7 cut(s) | 296, 393, 633, 642, 1065, 1078, 1093 |
| BstKTI | GATC | 6 cut(s) | 741, 765, 995, 1047, 1272, 1305 |
| BstMAI | GTCTC | 3 cut(s) | 166, 510, 588 |
| BstMBI | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| BstMCI | CGRYCG | 1 cut(s) | 259 |
| BstNI | CCWGG | 5 cut(s) | 10, 194, 275, 575, 1311 |
| BstSCI | CCNGG | 6 cut(s) | 8, 106, 192, 273, 573, 1309 |
| BstSFI | CTRYAG | 2 cut(s) | 985, 1428 |
| BstSLI | GKGCMC | 3 cut(s) | 210, 784, 1137 |
| BstUI | CGCG | 3 cut(s) | 438, 633, 1097 |
| BstV1I | GCAGC | 5 cut(s) | 147, 357, 858, 1011, 1317 |
| BstV2I | GAAGAC | 1 cut(s) | 238 |
| BstX2I | RGATCY | 2 cut(s) | 738, 1302 |
| BstYI | RGATCY | 2 cut(s) | 738, 1302 |
| BstZ17I | GTATAC | 1 cut(s) | 861 |
| BtgI | CCRYGG | 1 cut(s) | 1203 |
| BtrI | CACGTC | 2 cut(s) | 1111, 1399 |
| BtsCI | GGATG | 5 cut(s) | 120, 180, 282, 477, 1281 |
| BtsI | GCAGTG | 1 cut(s) | 994 |
| BtsIMutI | CAGTG | 1 cut(s) | 994 |
| Cac8I | GCNNGC | 9 cut(s) | 460, 810, 961, 985, 1058, 1074, 1089, 1095, 1452 |
| CfoI | GCGC | 7 cut(s) | 296, 393, 633, 642, 1065, 1078, 1093 |
| Cfr10I | RCCGGY | 3 cut(s) | 316, 717, 1072 |
| CseI | GACGC | 5 cut(s) | 25, 427, 520, 836, 1111 |
| CsiI | ACCWGGT | 1 cut(s) | 8 |
| Csp6I | GTAC | 1 cut(s) | 337 |
| CspAI | ACCGGT | 1 cut(s) | 717 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 303, 338 |
| CviAII | CATG | 5 cut(s) | 340, 562, 996, 1159, 1204 |
| CviQI | GTAC | 1 cut(s) | 337 |
| DdeI | CTNAG | 3 cut(s) | 507, 1005, 1408 |
| DinI | GGCGCC | 2 cut(s) | 392, 1064 |
| DpnI | GATC | 6 cut(s) | 740, 764, 994, 1046, 1271, 1304 |
| DpnII | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| DraIII | CACNNNGTG | 4 cut(s) | 1084, 1099, 1111, 1132 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 482, 929 |
| DriI | GACNNNNNGTC | 1 cut(s) | 242 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 482, 929 |
| EaeI | YGGCCR | 4 cut(s) | 324, 810, 998, 1350 |
| Eam1104I | CTCTTC | 1 cut(s) | 603 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 242 |
| EarI | CTCTTC | 1 cut(s) | 603 |
| EciI | GGCGGA | 4 cut(s) | 358, 389, 1181, 1248 |
| Ecl136II | GAGCTC | 1 cut(s) | 169 |
| Eco130I | CCWWGG | 2 cut(s) | 321, 1203 |
| Eco147I | AGGCCT | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 2 cut(s) | 171, 210 |
| Eco47I | GGWCC | 7 cut(s) | 196, 236, 380, 1012, 1180, 1198, 1402 |
| Eco53kI | GAGCTC | 1 cut(s) | 169 |
| Eco88I | CYCGRG | 1 cut(s) | 743 |
| EcoICRI | GAGCTC | 1 cut(s) | 169 |
| EcoO109I | RGGNCCY | 5 cut(s) | 277, 1012, 1054, 1180, 1198 |
| EcoRI | GAATTC | 1 cut(s) | 728 |
| EcoRII | CCWGG | 5 cut(s) | 8, 192, 273, 573, 1309 |
| EcoT14I | CCWWGG | 2 cut(s) | 321, 1203 |
| EcoT38I | GRGCYC | 2 cut(s) | 171, 210 |
| EgeI | GGCGCC | 2 cut(s) | 392, 1064 |
| EheI | GGCGCC | 2 cut(s) | 392, 1064 |
| ErhI | CCWWGG | 2 cut(s) | 321, 1203 |
| Esp3I | CGTCTC | 1 cut(s) | 166 |
| FaeI | CATG | 5 cut(s) | 343, 565, 999, 1162, 1207 |
| FaiI | YATR | 9 cut(s) | 26, 131, 341, 563, 861, 997, 1160, 1172, 1205 |
| FaqI | GGGAC | 5 cut(s) | 5, 366, 496, 752, 1193 |
| FatI | CATG | 5 cut(s) | 339, 561, 995, 1158, 1203 |
| FauI | CCCGC | 6 cut(s) | 122, 443, 467, 717, 1077, 1191 |
| FblI | GTMKAC | 2 cut(s) | 375, 860 |
| Fnu4HI | GCNGC | 9 cut(s) | 136, 346, 403, 526, 529, 872, 1025, 1061, 1331 |
| FokI | GGATG | 5 cut(s) | 107, 167, 269, 464, 1288 |
| FriOI | GRGCYC | 2 cut(s) | 171, 210 |
| Fsp4HI | GCNGC | 9 cut(s) | 136, 346, 403, 526, 529, 872, 1025, 1061, 1331 |
| FspBI | CTAG | 1 cut(s) | 875 |
| GlaI | GCGC | 7 cut(s) | 295, 392, 632, 641, 1064, 1077, 1092 |
| GluI | GCNGC | 9 cut(s) | 136, 346, 403, 526, 529, 872, 1025, 1061, 1331 |
| GsuI | CTGGAG | 3 cut(s) | 176, 866, 1358 |
| HaeII | RGCGCY | 4 cut(s) | 297, 394, 643, 1066 |
| HapII | CCGG | 7 cut(s) | 108, 151, 234, 317, 718, 1073, 1217 |
| HgaI | GACGC | 5 cut(s) | 25, 427, 520, 836, 1111 |
| HhaI | GCGC | 7 cut(s) | 296, 393, 633, 642, 1065, 1078, 1093 |
| Hin1I | GRCGYC | 4 cut(s) | 391, 531, 828, 1063 |
| Hin1II | CATG | 5 cut(s) | 343, 565, 999, 1162, 1207 |
| Hin6I | GCGC | 7 cut(s) | 294, 391, 631, 640, 1063, 1076, 1091 |
| HinP1I | GCGC | 7 cut(s) | 294, 391, 631, 640, 1063, 1076, 1091 |
| HincII | GTYRAC | 3 cut(s) | 619, 934, 1153 |
| HindII | GTYRAC | 3 cut(s) | 619, 934, 1153 |
| HindIII | AAGCTT | 1 cut(s) | 911 |
| HinfI | GANTC | 3 cut(s) | 703, 775, 1441 |
| HpaI | GTTAAC | 1 cut(s) | 1153 |
| HpaII | CCGG | 7 cut(s) | 108, 151, 234, 317, 718, 1073, 1217 |
| HphI | GGTGA | 2 cut(s) | 403, 1111 |
| Hpy166II | GTNNAC | 7 cut(s) | 376, 619, 861, 934, 1153, 1402, 1425 |
| Hpy188III | TCNNGA | 8 cut(s) | 151, 234, 286, 473, 736, 1273, 1337, 1467 |
| Hpy8I | GTNNAC | 7 cut(s) | 376, 619, 861, 934, 1153, 1402, 1425 |
| Hpy99I | CGWCG | 4 cut(s) | 245, 830, 896, 1112 |
| HpyAV | CCTTC | 4 cut(s) | 68, 441, 515, 1235 |
| HpyCH4III | ACNGT | 2 cut(s) | 380, 1429 |
| HpyCH4IV | ACGT | 3 cut(s) | 1110, 1155, 1398 |
| HpyCH4V | TGCA | 3 cut(s) | 987, 1333, 1450 |
| HpyF3I | CTNAG | 3 cut(s) | 507, 1005, 1408 |
| HpySE526I | ACGT | 3 cut(s) | 1110, 1155, 1398 |
| Hsp92I | GRCGYC | 4 cut(s) | 391, 531, 828, 1063 |
| Hsp92II | CATG | 5 cut(s) | 343, 565, 999, 1162, 1207 |
| HspAI | GCGC | 7 cut(s) | 294, 391, 631, 640, 1063, 1076, 1091 |
| KasI | GGCGCC | 2 cut(s) | 390, 1062 |
| KflI | GGGWCCC | 1 cut(s) | 1180 |
| Kpn2I | TCCGGA | 2 cut(s) | 150, 233 |
| KroI | GCCGGC | 1 cut(s) | 1072 |
| KroNI | GCCGGC | 1 cut(s) | 1074 |
| KspAI | GTTAAC | 1 cut(s) | 1153 |
| Kzo9I | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| LguI | GCTCTTC | 1 cut(s) | 603 |
| LmnI | GCTCC | 9 cut(s) | 105, 122, 153, 166, 236, 371, 637, 891, 1260 |
| Lsp1109I | GCAGC | 5 cut(s) | 147, 357, 858, 1011, 1317 |
| LweI | GCATC | 3 cut(s) | 828, 1269, 1342 |
| MabI | ACCWGGT | 1 cut(s) | 8 |
| MaeI | CTAG | 1 cut(s) | 875 |
| MaeII | ACGT | 3 cut(s) | 1110, 1155, 1398 |
| MaeIII | GTNAC | 1 cut(s) | 1099 |
| MalI | GATC | 6 cut(s) | 740, 764, 994, 1046, 1271, 1304 |
| MbiI | CCGCTC | 3 cut(s) | 117, 261, 664 |
| MboI | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| MboII | GAAGA | 5 cut(s) | 238, 620, 712, 724, 1450 |
| MflI | RGATCY | 2 cut(s) | 738, 1302 |
| MhlI | GDGCHC | 4 cut(s) | 171, 210, 784, 1137 |
| MlsI | TGGCCA | 4 cut(s) | 326, 812, 1000, 1352 |
| MluCI | AATT | 8 cut(s) | 599, 679, 692, 728, 845, 927, 1354, 1367 |
| MluNI | TGGCCA | 4 cut(s) | 326, 812, 1000, 1352 |
| Mly113I | GGCGCC | 2 cut(s) | 391, 1063 |
| MmeI | TCCRAC | 1 cut(s) | 279 |
| Mox20I | TGGCCA | 4 cut(s) | 326, 812, 1000, 1352 |
| MreI | CGCCGGCG | 1 cut(s) | 1072 |
| MroI | TCCGGA | 2 cut(s) | 150, 233 |
| MroNI | GCCGGC | 1 cut(s) | 1072 |
| MscI | TGGCCA | 4 cut(s) | 326, 812, 1000, 1352 |
| MseI | TTAA | 4 cut(s) | 602, 678, 1152, 1460 |
| Msp20I | TGGCCA | 4 cut(s) | 326, 812, 1000, 1352 |
| MspI | CCGG | 7 cut(s) | 108, 151, 234, 317, 718, 1073, 1217 |
| MspR9I | CCNGG | 6 cut(s) | 10, 108, 194, 275, 575, 1311 |
| MvaI | CCWGG | 5 cut(s) | 10, 194, 275, 575, 1311 |
| MvnI | CGCG | 3 cut(s) | 438, 633, 1097 |
| NaeI | GCCGGC | 1 cut(s) | 1074 |
| NarI | GGCGCC | 2 cut(s) | 391, 1063 |
| NciI | CCSGG | 1 cut(s) | 108 |
| NcoI | CCATGG | 1 cut(s) | 1203 |
| NdeII | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| NgoMIV | GCCGGC | 1 cut(s) | 1072 |
| NlaIII | CATG | 5 cut(s) | 343, 565, 999, 1162, 1207 |
| NmuCI | GTSAC | 1 cut(s) | 1099 |
| PaeR7I | CTCGAG | 1 cut(s) | 743 |
| PceI | AGGCCT | 1 cut(s) | 30 |
| PciSI | GCTCTTC | 1 cut(s) | 603 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 480, 963 |
| PdiI | GCCGGC | 1 cut(s) | 1074 |
| PfeI | GAWTC | 3 cut(s) | 703, 775, 1441 |
| PinAI | ACCGGT | 1 cut(s) | 717 |
| PkrI | GCNGC | 9 cut(s) | 137, 347, 404, 527, 530, 873, 1026, 1062, 1332 |
| PluTI | GGCGCC | 2 cut(s) | 394, 1066 |
| PpuMI | RGGWCCY | 3 cut(s) | 1012, 1180, 1198 |
| Psp124BI | GAGCTC | 1 cut(s) | 171 |
| Psp5II | RGGWCCY | 3 cut(s) | 1012, 1180, 1198 |
| Psp6I | CCWGG | 5 cut(s) | 8, 192, 273, 573, 1309 |
| PspGI | CCWGG | 5 cut(s) | 8, 192, 273, 573, 1309 |
| PspOMI | GGGCCC | 1 cut(s) | 206 |
| PspPPI | RGGWCCY | 3 cut(s) | 1012, 1180, 1198 |
| PspXI | VCTCGAGB | 1 cut(s) | 743 |
| PstI | CTGCAG | 1 cut(s) | 989 |
| PsuI | RGATCY | 2 cut(s) | 738, 1302 |
| RsaI | GTAC | 1 cut(s) | 338 |
| RsaNI | GTAC | 1 cut(s) | 337 |
| SacI | GAGCTC | 1 cut(s) | 171 |
| SapI | GCTCTTC | 1 cut(s) | 603 |
| SaqAI | TTAA | 4 cut(s) | 602, 678, 1152, 1460 |
| SatI | GCNGC | 9 cut(s) | 136, 346, 403, 526, 529, 872, 1025, 1061, 1331 |
| Sau3AI | GATC | 6 cut(s) | 738, 762, 992, 1044, 1269, 1302 |
| ScrFI | CCNGG | 6 cut(s) | 10, 108, 194, 275, 575, 1311 |
| SduI | GDGCHC | 4 cut(s) | 171, 210, 784, 1137 |
| SexAI | ACCWGGT | 1 cut(s) | 8 |
| SfaNI | GCATC | 3 cut(s) | 828, 1269, 1342 |
| SfcI | CTRYAG | 2 cut(s) | 985, 1428 |
| SfoI | GGCGCC | 2 cut(s) | 392, 1064 |
| Sfr274I | CTCGAG | 1 cut(s) | 743 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1072 |
| SinI | GGWCC | 7 cut(s) | 196, 236, 380, 1012, 1180, 1198, 1402 |
| SlaI | CTCGAG | 1 cut(s) | 743 |
| SmlI | CTYRAG | 3 cut(s) | 170, 743, 1465 |
| SmoI | CTYRAG | 3 cut(s) | 170, 743, 1465 |
| Sse9I | AATT | 8 cut(s) | 599, 679, 692, 728, 845, 927, 1354, 1367 |
| SseBI | AGGCCT | 1 cut(s) | 30 |
| SspDI | GGCGCC | 2 cut(s) | 390, 1062 |
| SspMI | CTAG | 1 cut(s) | 875 |
| SstI | GAGCTC | 1 cut(s) | 171 |
| StuI | AGGCCT | 1 cut(s) | 30 |
| StyD4I | CCNGG | 6 cut(s) | 8, 106, 192, 273, 573, 1309 |
| StyI | CCWWGG | 2 cut(s) | 321, 1203 |
| TaaI | ACNGT | 2 cut(s) | 380, 1429 |
| TaiI | ACGT | 3 cut(s) | 1113, 1158, 1401 |
| TaqI | TCGA | 6 cut(s) | 474, 543, 627, 660, 744, 1248 |
| TaqII | GACCGA | 1 cut(s) | 533 |
| TasI | AATT | 8 cut(s) | 599, 679, 692, 728, 845, 927, 1354, 1367 |
| TatI | WGTACW | 1 cut(s) | 336 |
| TauI | GCSGC | 4 cut(s) | 405, 528, 531, 1063 |
| TfiI | GAWTC | 3 cut(s) | 703, 775, 1441 |
| Tru1I | TTAA | 4 cut(s) | 602, 678, 1152, 1460 |
| Tru9I | TTAA | 4 cut(s) | 602, 678, 1152, 1460 |
| TscAI | CASTG | 1 cut(s) | 994 |
| TseFI | GTSAC | 1 cut(s) | 1099 |
| TseI | GCWGC | 5 cut(s) | 135, 345, 871, 1024, 1330 |
| Tsp45I | GTSAC | 1 cut(s) | 1099 |
| TspDTI | ATGAA | 4 cut(s) | 238, 858, 1254, 1451 |
| TspGWI | ACGGA | 1 cut(s) | 1137 |
| TspRI | CASTG | 1 cut(s) | 994 |
| VpaK11BI | GGWCC | 7 cut(s) | 196, 236, 380, 1012, 1180, 1198, 1402 |
| XapI | RAATTY | 3 cut(s) | 728, 845, 1367 |
| XhoI | CTCGAG | 1 cut(s) | 743 |
| XmiI | GTMKAC | 2 cut(s) | 375, 860 |
| XspI | CTAG | 1 cut(s) | 875 |