RLG00000002153

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000853
Physical Location & Seq
Forward (+)
26346996 .. 26347690
695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002153

Sequence Viewer

Length: 483 bp
ATGGCGACCTGGTTCTTCCTCATAGTAACTACCCTAATCATCTCTGTTCTTGTCAAAACCATTCTCAGTCTAATCTTAACAAACAAACTCCCTCCTGGACCTGTTGCCATTCCCCTAATCAGCAGCTTGTTTTATGGCTCCGCAAGTTGCCTTATGAGATGGAACTCAGAGATTAAAGGCCGGCCGGTTGTGAAAAAAACTGAGGAAGAGATGAAAGAGGAGGACGTGCAGAAGATGCCTTATCTGAAAGCTGTGATCTTGGAGGGTTTAAGGCGTCACCCACCTGGTCACTTTGCGTTGCCACATGCAGTTAGCCAAGACATCGTTTTGGATGGTTATGAGGTGCCCAAGAATGCTACTGTTGATTTCACAGTGGCTGATATAGGCTGTGCATGGAGCCAATATGGACCTATAGGAGGAGCAGGAGTTCACTGTGGTCATGAAGAATCCGTTATAGGTCAACATATCTCAAAGGGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204
Pfam Domains
Protein Families
p450

Protein Analysis

161

Amino Acids

17.49

Weight (kDa)

6.29

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 67 - 123 9.9e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 416
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 8, 94, 283
AloI GAACNNNNNNTCC 2 cut(s) 411, 443
AluBI AGCT 2 cut(s) 126, 251
AluI AGCT 2 cut(s) 126, 251
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 2 cut(s) 178, 182
ApeKI GCWGC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 98, 407
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 2 cut(s) 98, 407
BaeGI GKGCMC 1 cut(s) 348
BanI GGYRCC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 135
BccI CCATC 2 cut(s) 153, 326
BciT130I CCWGG 3 cut(s) 10, 96, 285
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 3 cut(s) 10, 96, 285
Bme18I GGWCC 2 cut(s) 98, 407
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 98, 407
BmiI GGNNCC 3 cut(s) 139, 345, 398
BmrFI CCNGG 3 cut(s) 10, 96, 285
BmsI GCATC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse118I RCCGGY 2 cut(s) 180, 184
BseBI CCWGG 3 cut(s) 10, 96, 285
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 3 cut(s) 79, 180, 192
BseRI GAGGAG 2 cut(s) 233, 432
BseSI GKGCMC 1 cut(s) 348
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 180, 184
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 185
BsiSI CCGG 2 cut(s) 181, 185
BslI CCNNNNNNNGG 1 cut(s) 416
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 2 cut(s) 180, 184
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 180, 184
BspCNI CTCAG 3 cut(s) 78, 179, 193
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 3 cut(s) 139, 345, 398
BspT107I GGYRCC 1 cut(s) 343
BsrFI RCCGGY 2 cut(s) 180, 184
BssAI RCCGGY 2 cut(s) 180, 184
BssMI GATC 1 cut(s) 255
BssNI GRCGYC 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 10, 96, 285
Bst4CI ACNGT 3 cut(s) 361, 373, 434
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 65, 166, 201
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 3 cut(s) 10, 96, 285
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 3 cut(s) 8, 94, 283
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 135
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 180, 184
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 378, 430
Cac8I GCNNGC 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 439
Cfr10I RCCGGY 2 cut(s) 180, 184
Cfr13I GGNCC 2 cut(s) 98, 407
CseI GACGC 1 cut(s) 263
CsiI ACCWGGT 2 cut(s) 8, 283
CviAII CATG 3 cut(s) 305, 393, 440
CviJI RGCY 9 cut(s) 126, 138, 180, 184, 251, 315, 377, 387, 399
CviKI_1 RGCY 9 cut(s) 126, 138, 180, 184, 251, 315, 377, 387, 399
DdeI CTNAG 3 cut(s) 65, 166, 201
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 98, 407
Eco52I CGGCCG 1 cut(s) 182
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoRII CCWGG 3 cut(s) 8, 94, 283
FaeI CATG 3 cut(s) 308, 396, 443
FatI CATG 3 cut(s) 304, 392, 439
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 1 cut(s) 344
FseI GGCCGGCC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 2 cut(s) 180, 184
HapII CCGG 2 cut(s) 181, 185
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 3 cut(s) 308, 396, 443
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HinfI GANTC 1 cut(s) 446
HpaII CCGG 2 cut(s) 181, 185
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 430, 461
Hpy188I TCNGA 2 cut(s) 169, 246
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 2 cut(s) 430, 461
HpyCH4III ACNGT 3 cut(s) 361, 373, 434
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 229, 308, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 3 cut(s) 65, 166, 201
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 3 cut(s) 308, 396, 443
KroI GCCGGC 1 cut(s) 180
KroNI GCCGGC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 3 cut(s) 143, 396, 419
LpnPI CCDG 9 cut(s) 22, 81, 108, 114, 194, 198, 270, 297, 408
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 1 cut(s) 225
MabI ACCWGGT 2 cut(s) 8, 283
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 25, 275, 287
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 4 cut(s) 7, 218, 244, 455
MhlI GDGCHC 1 cut(s) 348
MnlI CCTC 8 cut(s) 29, 102, 196, 211, 214, 256, 334, 410
MroNI GCCGGC 1 cut(s) 180
MseI TTAA 3 cut(s) 77, 174, 269
MspI CCGG 2 cut(s) 181, 185
MspR9I CCNGG 3 cut(s) 10, 96, 285
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 3 cut(s) 10, 96, 285
MwoI GCNNNNNNNGC 1 cut(s) 235
NaeI GCCGGC 1 cut(s) 182
NdeII GATC 1 cut(s) 255
NgoMIV GCCGGC 1 cut(s) 180
NlaIII CATG 3 cut(s) 308, 396, 443
NlaIV GGNNCC 3 cut(s) 139, 345, 398
NmuCI GTSAC 2 cut(s) 275, 287
NspI RCATGY 1 cut(s) 308
PagI TCATGA 1 cut(s) 439
PctI GAATGC 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 446
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 8, 94, 283
PspGI CCWGG 3 cut(s) 8, 94, 283
PspN4I GGNNCC 3 cut(s) 139, 345, 398
PspPI GGNCC 2 cut(s) 98, 407
PstNI CAGNNNCTG 1 cut(s) 377
RigI GGCCGGCC 1 cut(s) 184
SaqAI TTAA 3 cut(s) 77, 174, 269
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 255
Sau96I GGNCC 2 cut(s) 98, 407
ScrFI CCNGG 3 cut(s) 10, 96, 285
SduI GDGCHC 1 cut(s) 348
SetI ASST 9 cut(s) 11, 103, 128, 228, 253, 286, 345, 412, 460
SexAI ACCWGGT 2 cut(s) 8, 283
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 98, 407
SsiI CCGC 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 8, 94, 283
TaaI ACNGT 3 cut(s) 361, 373, 434
TaiI ACGT 1 cut(s) 228
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 3 cut(s) 77, 174, 269
Tru9I TTAA 3 cut(s) 77, 174, 269
TscAI CASTG 2 cut(s) 378, 437
TseFI GTSAC 2 cut(s) 275, 287
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 2 cut(s) 275, 287
TspDTI ATGAA 2 cut(s) 227, 456
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 2 cut(s) 378, 437
VpaK11BI GGWCC 2 cut(s) 98, 407
XagI CCTNNNNNAGG 1 cut(s) 414
XceI RCATGY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.