Rmu_sc0038902.1_g000002

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038902.1
OG0000853
Physical Location & Seq
Forward (+)
1318 .. 1812
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038902.1_g000002.1.cds

Sequence Viewer

Length: 495 bp
atggaacctggctcttactcattgttaccaccctcattatcttttcttctcaaaactattcttagtctcatctccaccaaaaccaacaccaagaaactccctcctggacccctcgccgttcccataatcggaagctttttatggctacgtaaatcattttctgacgtagaggttggacttcgaaaactcctatgccaatatggtcctatcctcaacctcaacattggctccagccctgccatattcgttgccaaccactccctggcacaccaaaccttgatccaaaatggtgctgaatttgcagacaggccaccagcctttgccactgacaaaatcataaccggtaaccaacacaacatcatctctgcagtgtatggacccatgtggagcatcctccgtcgcaacctgacctccgaaatcctccacccttcacgtgttaagtcttatggtggcgctcgcagaagggttctggacatcctcatcaaccgcctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204
Pfam Domains
Protein Families
p450

Protein Analysis

164

Amino Acids

18.05

Weight (kDa)

10.28

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 1 cut(s) 487
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 296
AcvI CACGTG 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 128, 262
AflIII ACRYGT 1 cut(s) 433
AgeI ACCGGT 1 cut(s) 341
AjnI CCWGG 3 cut(s) 7, 103, 261
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 274
AoxI GGCC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 296
AsiGI ACCGGT 1 cut(s) 341
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 107, 203, 377
AsuII TTCGAA 1 cut(s) 181
AvaII GGWCC 3 cut(s) 107, 203, 377
BbrPI CACGTG 1 cut(s) 434
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 3 cut(s) 9, 105, 263
BcoDI GTCTC 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 456
Bme1390I CCNGG 3 cut(s) 9, 105, 263
Bme18I GGWCC 3 cut(s) 107, 203, 377
BmgT120I GGNCC 3 cut(s) 107, 203, 377
BmiI GGNNCC 4 cut(s) 6, 109, 229, 379
BmrFI CCNGG 3 cut(s) 9, 105, 263
BmsI GCATC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 181
BsaAI YACGTR 2 cut(s) 149, 434
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 395, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 262
Bse118I RCCGGY 1 cut(s) 341
BseBI CCWGG 3 cut(s) 9, 105, 263
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 390, 474
BseLI CCNNNNNNNGG 2 cut(s) 128, 262
BshFI GGCC 1 cut(s) 310
BshTI ACCGGT 1 cut(s) 341
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 2 cut(s) 128, 262
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 310
Bsp119I TTCGAA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 1 cut(s) 487
BspANI GGCC 1 cut(s) 310
BspLI GGNNCC 4 cut(s) 6, 109, 229, 379
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 279
Bst2UI CCWGG 3 cut(s) 9, 105, 263
BstBAI YACGTR 2 cut(s) 149, 434
BstBI TTCGAA 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 2 cut(s) 390, 474
BstH2I RGCGCY 1 cut(s) 456
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 3 cut(s) 9, 105, 263
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 3 cut(s) 7, 103, 261
BstSFI CTRYAG 1 cut(s) 366
BstSNI TACGTA 1 cut(s) 149
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 390, 474
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 324, 375
Cac8I GCNNGC 1 cut(s) 457
CfoI GCGC 1 cut(s) 455
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 3 cut(s) 107, 203, 377
CspAI ACCGGT 1 cut(s) 341
CviAII CATG 1 cut(s) 382
CviJI RGCY 7 cut(s) 12, 135, 145, 228, 234, 310, 317
CviKI_1 RGCY 7 cut(s) 12, 135, 145, 228, 234, 310, 317
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Eco105I TACGTA 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 107, 203, 377
Eco72I CACGTG 1 cut(s) 434
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoRII CCWGG 3 cut(s) 7, 103, 261
FaeI CATG 1 cut(s) 385
FaiI YATR 9 cut(s) 125, 142, 193, 201, 242, 338, 375, 383, 447
FatI CATG 1 cut(s) 381
FokI GGATG 2 cut(s) 377, 461
GlaI GCGC 1 cut(s) 454
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 456
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 455
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 133
HpaII CCGG 1 cut(s) 342
Hpy188I TCNGA 3 cut(s) 131, 163, 415
Hpy188III TCNNGA 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 2 cut(s) 438, 456
HpyCH4IV ACGT 3 cut(s) 148, 165, 433
HpyCH4V TGCA 2 cut(s) 302, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 3 cut(s) 148, 165, 433
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 1 cut(s) 453
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 2 cut(s) 233, 387
LweI GCATC 1 cut(s) 399
MaeII ACGT 3 cut(s) 148, 165, 433
MaeIII GTNAC 2 cut(s) 24, 344
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 1 cut(s) 38
MluCI AATT 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 154
MseI TTAA 1 cut(s) 438
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 3 cut(s) 9, 105, 263
MvaI CCWGG 3 cut(s) 9, 105, 263
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 4 cut(s) 6, 109, 229, 379
NspV TTCGAA 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 341
PmaCI CACGTG 1 cut(s) 434
PmlI CACGTG 1 cut(s) 434
Ppu21I YACGTR 2 cut(s) 149, 434
Psp6I CCWGG 3 cut(s) 7, 103, 261
PspCI CACGTG 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 344
PspGI CCWGG 3 cut(s) 7, 103, 261
PspN4I GGNNCC 4 cut(s) 6, 109, 229, 379
PspPI GGNCC 3 cut(s) 107, 203, 377
PstI CTGCAG 1 cut(s) 370
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 3 cut(s) 107, 203, 377
ScrFI CCNGG 3 cut(s) 9, 105, 263
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 366
SfuI TTCGAA 1 cut(s) 181
SinI GGWCC 3 cut(s) 107, 203, 377
SnaBI TACGTA 1 cut(s) 149
Sse9I AATT 1 cut(s) 296
SsiI CCGC 1 cut(s) 487
StyD4I CCNGG 3 cut(s) 7, 103, 261
TaiI ACGT 3 cut(s) 151, 168, 436
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 296
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 331, 375
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 331, 375
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 3 cut(s) 107, 203, 377
XapI RAATTY 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.