Rmu_sc0005704.1_g000011

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005704.1
OG0000853
Physical Location & Seq
Forward (+)
34298 .. 34669
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005704.1_g000011.1.cds

Sequence Viewer

Length: 372 bp
atgattatactatgttacctagacacgctctgggaactcgagcttctggacgagaagaggaagctgaataaaaaagatatcattagcctctgttcagagtttctcagtgcaggaacagatactacttccaccgcgctgcagtggatcatggccaatatcgtcaagtatccaactatccaggagaggcttctcgctgagattaaaggagttgtggaggaaacagatgaggtggtgaaggaggaggacttgcagaagatgccttatttaaaagcggtgatcttggagggtttaaggcgccacccacttggccactttgcgctgctgcattccgtcacgcacgacatcgttttggatggttatgtggtgccgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204
Pfam Domains
Protein Families
p450

Protein Analysis

123

Amino Acids

14.08

Weight (kDa)

5.01

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 294, 364
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 132, 272
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 2 cut(s) 150, 307
AcyI GRCGYC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 43, 64
AluI AGCT 2 cut(s) 43, 64
AlwI GGATC 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 2 cut(s) 150, 307
ApeKI GCWGC 3 cut(s) 136, 319, 322
AspLEI GCGC 3 cut(s) 136, 297, 319
AsuHPI GGTGA 2 cut(s) 244, 286
AvaI CYCGRG 1 cut(s) 38
BalI TGGCCA 2 cut(s) 152, 309
BanI GGYRCC 2 cut(s) 294, 364
BbvI GCAGC 3 cut(s) 123, 306, 309
BccI CCATC 1 cut(s) 347
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 179
BciVI GTATCC 1 cut(s) 177
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 298
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 3 cut(s) 137, 320, 323
BlsI GCNGC 3 cut(s) 138, 321, 324
Bme1390I CCNGG 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 296, 366
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 295
BseBI CCWGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 358
BseMII CTCAG 2 cut(s) 118, 186
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 123, 306, 309
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 152, 309
BshNI GGYRCC 2 cut(s) 294, 364
BsiHKCI CYCGRG 1 cut(s) 38
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 2 cut(s) 152, 309
BsoBI CYCGRG 1 cut(s) 38
Bsp143I GATC 2 cut(s) 144, 276
BspACI CCGC 2 cut(s) 132, 272
BspANI GGCC 2 cut(s) 152, 309
BspCNI CTCAG 2 cut(s) 117, 187
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 296, 366
BspMAI CTGCAG 1 cut(s) 141
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 294, 364
BssMI GATC 2 cut(s) 144, 276
BssNI GRCGYC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 104, 195
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 3 cut(s) 136, 297, 319
BstKTI GATC 2 cut(s) 147, 279
BstMBI GATC 2 cut(s) 144, 276
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 137
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 123, 306, 309
BstXI CCANNNNNNTGG 1 cut(s) 305
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 2 cut(s) 152, 309
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 112, 146
CfoI GCGC 3 cut(s) 136, 297, 319
CviAII CATG 1 cut(s) 148
CviJI RGCY 6 cut(s) 43, 64, 87, 152, 187, 309
CviKI_1 RGCY 6 cut(s) 43, 64, 87, 152, 187, 309
DdeI CTNAG 2 cut(s) 104, 195
DinI GGCGCC 1 cut(s) 296
DpnI GATC 2 cut(s) 146, 278
DpnII GATC 2 cut(s) 144, 276
DraI TTTAAA 1 cut(s) 267
EaeI YGGCCR 2 cut(s) 150, 307
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco32I GATATC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 79
EgeI GGCGCC 1 cut(s) 296
EheI GGCGCC 1 cut(s) 296
FaeI CATG 1 cut(s) 151
FaiI YATR 4 cut(s) 8, 13, 149, 360
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 137, 320, 323
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 3 cut(s) 137, 320, 323
FspBI CTAG 1 cut(s) 20
GlaI GCGC 3 cut(s) 135, 296, 318
GluI GCNGC 3 cut(s) 137, 320, 323
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 2 cut(s) 152, 309
HhaI GCGC 3 cut(s) 136, 297, 319
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 3 cut(s) 134, 295, 317
HinP1I GCGC 3 cut(s) 134, 295, 317
HphI GGTGA 2 cut(s) 244, 286
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 110, 139, 250, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 104, 195
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 3 cut(s) 134, 295, 317
KasI GGCGCC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 144, 276
LpnPI CCDG 5 cut(s) 16, 32, 96, 164, 191
Lsp1109I GCAGC 3 cut(s) 123, 306, 309
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 14, 331
MalI GATC 2 cut(s) 146, 278
MboI GATC 2 cut(s) 144, 276
MboII GAAGA 2 cut(s) 67, 265
MlsI TGGCCA 2 cut(s) 152, 309
MluNI TGGCCA 2 cut(s) 152, 309
Mly113I GGCGCC 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 8 cut(s) 51, 98, 177, 208, 220, 232, 235, 277
Mox20I TGGCCA 2 cut(s) 152, 309
MscI TGGCCA 2 cut(s) 152, 309
MseI TTAA 3 cut(s) 201, 266, 290
Msp20I TGGCCA 2 cut(s) 152, 309
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 256
NarI GGCGCC 1 cut(s) 295
NdeII GATC 2 cut(s) 144, 276
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 296, 366
NmuCI GTSAC 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 38
PctI GAATGC 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 3 cut(s) 138, 321, 324
PluTI GGCGCC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 296, 366
PspXI VCTCGAGB 1 cut(s) 38
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PstI CTGCAG 1 cut(s) 141
SaqAI TTAA 3 cut(s) 201, 266, 290
SatI GCNGC 3 cut(s) 137, 320, 323
Sau3AI GATC 2 cut(s) 144, 276
ScrFI CCNGG 1 cut(s) 179
SetI ASST 4 cut(s) 21, 45, 66, 231
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 1 cut(s) 137
SfoI GGCGCC 1 cut(s) 296
Sfr274I CTCGAG 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 2 cut(s) 132, 272
SspDI GGCGCC 1 cut(s) 294
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 39
Tru1I TTAA 3 cut(s) 201, 266, 290
Tru9I TTAA 3 cut(s) 201, 266, 290
TscAI CASTG 2 cut(s) 112, 146
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 136, 319, 322
Tsp45I GTSAC 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 2 cut(s) 112, 146
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.