Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000853

Physical Location & Seq

Genomic Coordinates Forward (+)

29945283 .. 29945492

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1203900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGAGAAACGGAGGAGGAGGTGCAGGAGGAGGTCCTGCACAGGCTGCCGTATCTGAAAGCCGTCATCTTGGAGGGGCTGAGGCGCCACCCGCCGGGGCACTTTGTGCTGCCGCACGCGGTCACGCATGACGTGGTTGTGGATGCAAATTTCTTCCTCCTTGATCTTGGACAATTTTGCACCTACAAAACAATTAATACCTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

70

Amino Acids

7.85

Weight (kDa)

5.34

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	6 - 49	2.4e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64900 AT1G64930 AT1G64940 AT1G64950 AT2G12190 AT5G61320
fragaria_vesca	FvH4_3g26910 FvH4_4g17150 FvH4_5g25581 FvH4_5g25581 FvH4_5g25581 FvH4_7g21810 FvH4_7g29661 FvH4_7g29661 FvH4_7g29700 FvH4_7g29720 FvH4_7g29721 FvH4_7g29740
malus_domestica	MD01G1203700.v1.1 MD01G1203800.v1.1 MD01G1203900.v1.1 MD01G1204000.v1.1 MD01G1204300.v1.1 MD01G1204400.v1.1 MD01G1204500.v1.1 MD07G1273000.v1.1
prunus_persica	Prupe.2G296300_v2.0.a1 Prupe.2G296500_v2.0.a1 Prupe.2G296600_v2.0.a1
pyrus_communis	pycom01g21300 pycom01g21310 pycom01g21350 pycom01g21400 pycom07g24940
rosa_chinensis	RchiOBHm_Chr1g0377691 RchiOBHm_Chr1g0377701 RchiOBHm_Chr7g0221601
rosa_laevigata	RLG00000002153 RLG00000026503 RLG00000026505
rosa_multiflora	Rmu_sc0002832.1_g000018 Rmu_sc0002832.1_g000019 Rmu_sc0005704.1_g000011 Rmu_sc0038902.1_g000002
rosa_roxburghii	Rroxscaffold_3G00238260 Rroxscaffold_4G00281110 Rroxscaffold_4G00281120
rosa_rugosa	Rorug01G0404400 Rorug01G0404500
rosa_samantha	Rh1AG428000 Rh1AG428100 Rh1AG428200 Rh1BG381100 Rh1BG381200 Rh1BG381300 Rh1CG000400 Rh1CG395100 Rh1CG395200 Rh1DG412100 Rh1DG412200 Rh1DG412300 Rh3DG181100 Rh7BG332800 Rh7DG340900
rosa_wichuraiana	Rw1G004050 Rw1G037050 Rw1G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	84
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	92, 113, 119
AcsI	RAATTY	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	85
AdeI	CACNNNGTG	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	46, 109
ApoI	RAATTY	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	33, 96
BceAI	ACGGC	2 cut(s)	34, 47
BcnI	CCSGG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	3 cut(s)	47, 110, 113
BlsI	GCNGC	3 cut(s)	48, 111, 114
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	133
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	3 cut(s)	29, 32, 44
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	33, 96
BsgI	GTGCAG	2 cut(s)	23, 44
Bsh1236I	CGCG	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	92, 113, 119
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	85
BstAPI	GCANNNNNTGC	2 cut(s)	46, 106
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	80, 202
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 91, 106
BstSCI	CCNGG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	102
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	33, 96
Bsu36I	CCTNAGG	1 cut(s)	202
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	3 cut(s)	46, 62, 79
CviKI_1	RGCY	3 cut(s)	46, 62, 79
DdeI	CTNAG	2 cut(s)	80, 202
DinI	GGCGCC	1 cut(s)	86
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DraIII	CACNNNGTG	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	34
EgeI	GGCGCC	1 cut(s)	86
EheI	GGCGCC	1 cut(s)	86
FaeI	CATG	1 cut(s)	131
FaiI	YATR	1 cut(s)	129
FatI	CATG	1 cut(s)	127
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	47, 110, 113
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	47, 110, 113
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	3 cut(s)	47, 110, 113
HaeII	RGCGCY	1 cut(s)	88
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	25, 40, 146, 180
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 91, 106
HpyF3I	CTNAG	2 cut(s)	80, 202
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	85
KasI	GGCGCC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	11, 28, 50, 108
Lsp1109I	GCAGC	2 cut(s)	33, 96
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	148, 173, 192
Mly113I	GGCGCC	1 cut(s)	85
MnlI	CCTC	8 cut(s)	7, 10, 13, 22, 25, 67, 75, 167
MseI	TTAA	2 cut(s)	195, 208
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	46, 91, 106
NarI	GGCGCC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	48, 111, 114
PluTI	GGCGCC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	34
PshBI	ATTAAT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	195, 208
SatI	GCNGC	3 cut(s)	47, 110, 113
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	6 cut(s)	24, 36, 135, 185, 203, 208
SfaNI	GCATC	1 cut(s)	133
SfoI	GGCGCC	1 cut(s)	86
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	3 cut(s)	148, 173, 192
SsiI	CCGC	3 cut(s)	92, 113, 119
SspDI	GGCGCC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	135
TasI	AATT	3 cut(s)	148, 173, 192
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	195, 208
Tru9I	TTAA	2 cut(s)	195, 208
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	46, 109
Tsp45I	GTSAC	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.