FvH4_7g26641

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002292
Physical Location & Seq
Forward (+)
20076259 .. 20077204
946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26641.t1

Sequence Viewer

Length: 771 bp
ATGAAGGAAATCCTTCGTGGTGCTGGAGCTTTAAGAGCACGAGACATAGTCCACCCTAGTTCTGACATTCTTTGCTTTAGTCAGAACCGTAATCAGATGGCATTGGAGACCCATCTAGACCAGCCAAATGATGTAGCTTTGAGGACAATGGATATAGTCCATTCTAGTGCTGATCAATTTGTTCCATTCGACTCTCCTGGGCACCATTCTCAAACGGCATCAGAGACTCATCAAGAGCAGGCAGACAATTTGCTGGAGTACTTCAAGTTCAGAATGGGAAGAGACTCTCCTAGTGATGCACGTGCAGCACTGTTAGTCGTAGCTGTATTAGTTGCGACTGCAACCTTTCAGGTTGCACTCAACCCTCCAGGAGGTCTTTGGCAGGACATAGACTTGAGCAAAAATGGGACTGAGCCACCACAGCTTGCAGGGACGTCCAATATAGCTTGTTATTATCCAGCCTACTCCATCCTTTTTGCAGTTTTCAACTCCATTGGGTTTTCTGTTTCTCTTCACATGATCAATATTCTAACAACCAATTTCCCTTTGCGGTTGGAACTTCAAGTTTGTGGCATTGCAATGTACTTCACCTACATCAATGGATTGATTACAATTTCTCCAGGCGAAACCGCAGGGTGGTACTCACTGTTTGCACTTACGCCAGCTTTGCCTCCGCTGGTACTATTTGCTGCCAGATGGGTTCAGAAACTTATCATCAAGCTCAGAGAACTCCTGCTAAACCAGATGCCAATATTAAGTAGATTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

257

Amino Acids

28.36

Weight (kDa)

5.94

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 99 - 196 5.1e-15 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 3 cut(s) 550, 630, 674
AcvI CACGTG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 4 cut(s) 260, 584, 641, 681
AfiI CCNNNNNNNGG 2 cut(s) 371, 636
AgsI TTSAA 3 cut(s) 265, 487, 563
AjnI CCWGG 3 cut(s) 196, 367, 619
AluBI AGCT 7 cut(s) 29, 137, 323, 424, 446, 665, 721
AluI AGCT 7 cut(s) 29, 137, 323, 424, 446, 665, 721
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 4 cut(s) 36, 101, 218, 276
ApeKI GCWGC 2 cut(s) 305, 689
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 580
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 201
BauI CACGAG 1 cut(s) 39
BbrPI CACGTG 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 317, 676
BccI CCATC 4 cut(s) 91, 120, 476, 690
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 3 cut(s) 198, 369, 621
BclI TGATCA 2 cut(s) 172, 519
BcoDI GTCTC 4 cut(s) 36, 101, 218, 276
BfaI CTAG 4 cut(s) 57, 116, 165, 291
BisI GCNGC 2 cut(s) 306, 690
BlsI GCNGC 2 cut(s) 307, 691
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 198, 369, 621
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 3 cut(s) 198, 369, 621
BmsI GCATC 3 cut(s) 227, 286, 735
BpmI CTGGAG 4 cut(s) 45, 275, 351, 603
BpuEI CTTGAG 1 cut(s) 415
BsaAI YACGTR 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 601, 631
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 636
Bse3DI GCAATG 2 cut(s) 573, 585
BseBI CCWGG 3 cut(s) 198, 369, 621
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 371, 636
BseMI GCAATG 2 cut(s) 573, 585
BseMII CTCAG 2 cut(s) 402, 736
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 2 cut(s) 317, 676
BsgI GTGCAG 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 40
BslFI GGGAC 2 cut(s) 421, 445
BslI CCNNNNNNNGG 2 cut(s) 371, 636
BsmAI GTCTC 4 cut(s) 36, 101, 218, 276
BsmFI GGGAC 2 cut(s) 421, 445
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 40, 204
Bsp143I GATC 2 cut(s) 172, 519
BspACI CCGC 3 cut(s) 550, 630, 674
BspCNI CTCAG 2 cut(s) 403, 735
BspLI GGNNCC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 573, 585
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 2 cut(s) 172, 519
BssNI GRCGYC 1 cut(s) 434
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 3 cut(s) 198, 369, 621
Bst4CI ACNGT 3 cut(s) 89, 312, 648
Bst6I CTCTTC 2 cut(s) 274, 516
BstACI GRCGYC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 240, 426, 663
BstDEI CTNAG 2 cut(s) 411, 722
BstENI CCTNNNNNAGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 468
BstKTI GATC 2 cut(s) 175, 522
BstMAI GTCTC 4 cut(s) 36, 101, 218, 276
BstMBI GATC 2 cut(s) 172, 519
BstMWI GCNNNNNNNGC 4 cut(s) 35, 305, 421, 667
BstNI CCWGG 3 cut(s) 198, 369, 621
BstSCI CCNGG 3 cut(s) 196, 367, 619
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 317, 676
BtsCI GGATG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 308, 644
Cac8I GCNNGC 3 cut(s) 240, 426, 663
Csp6I GTAC 4 cut(s) 259, 583, 640, 680
CviAII CATG 1 cut(s) 517
CviQI GTAC 4 cut(s) 259, 583, 640, 680
DdeI CTNAG 2 cut(s) 411, 722
DpnI GATC 2 cut(s) 174, 521
DpnII GATC 2 cut(s) 172, 519
Eam1104I CTCTTC 2 cut(s) 274, 516
EarI CTCTTC 2 cut(s) 274, 516
Eco31I GGTCTC 1 cut(s) 101
Eco72I CACGTG 1 cut(s) 302
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoRII CCWGG 3 cut(s) 196, 367, 619
FaeI CATG 1 cut(s) 520
FaiI YATR 7 cut(s) 47, 155, 389, 443, 518, 767, 769
FaqI GGGAC 2 cut(s) 421, 445
FatI CATG 1 cut(s) 516
FbaI TGATCA 2 cut(s) 172, 519
Fnu4HI GCNGC 2 cut(s) 306, 690
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 2 cut(s) 306, 690
FspBI CTAG 4 cut(s) 57, 116, 165, 291
GluI GCNGC 2 cut(s) 306, 690
GsuI CTGGAG 4 cut(s) 45, 275, 351, 603
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 1 cut(s) 520
HinfI GANTC 4 cut(s) 191, 226, 284, 762
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 7 cut(s) 64, 84, 96, 223, 272, 705, 725
Hpy188III TCNNGA 2 cut(s) 116, 233
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 89, 312, 648
HpyCH4IV ACGT 2 cut(s) 301, 434
HpyCH4V TGCA 8 cut(s) 299, 305, 341, 356, 428, 479, 578, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 305, 421, 667
HpyF3I CTNAG 2 cut(s) 411, 722
HpySE526I ACGT 2 cut(s) 301, 434
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 1 cut(s) 520
Ksp22I TGATCA 2 cut(s) 172, 519
Kzo9I GATC 2 cut(s) 172, 519
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 2 cut(s) 317, 676
LweI GCATC 3 cut(s) 227, 286, 735
MaeI CTAG 4 cut(s) 57, 116, 165, 291
MaeII ACGT 2 cut(s) 301, 434
MalI GATC 2 cut(s) 174, 521
MboI GATC 2 cut(s) 172, 519
MboII GAAGA 2 cut(s) 291, 503
MhlI GDGCHC 2 cut(s) 40, 204
MluCI AATT 4 cut(s) 176, 247, 538, 612
MlyI GAGTC 3 cut(s) 185, 220, 278
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 4 cut(s) 135, 365, 375, 681
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 32, 755
MslI CAYNNNNRTG 2 cut(s) 165, 578
MspA1I CMGCKG 1 cut(s) 676
MspR9I CCNGG 3 cut(s) 198, 369, 621
MvaI CCWGG 3 cut(s) 198, 369, 621
MwoI GCNNNNNNNGC 4 cut(s) 35, 305, 421, 667
NdeII GATC 2 cut(s) 172, 519
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 762
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 2 cut(s) 307, 691
PleI GAGTC 3 cut(s) 185, 220, 278
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 3 cut(s) 185, 220, 278
Ppu21I YACGTR 1 cut(s) 302
Psp6I CCWGG 3 cut(s) 196, 367, 619
PspCI CACGTG 1 cut(s) 302
PspGI CCWGG 3 cut(s) 196, 367, 619
PspN4I GGNNCC 1 cut(s) 203
PsrI GAACNNNNNNTAC 2 cut(s) 251, 283
PsyI GACNNNGTC 1 cut(s) 47
RsaI GTAC 4 cut(s) 260, 584, 641, 681
RsaNI GTAC 4 cut(s) 259, 583, 640, 680
RseI CAYNNNNRTG 2 cut(s) 165, 578
SaqAI TTAA 2 cut(s) 32, 755
SatI GCNGC 2 cut(s) 306, 690
Sau3AI GATC 2 cut(s) 172, 519
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 3 cut(s) 185, 220, 278
ScrFI CCNGG 3 cut(s) 198, 369, 621
SduI GDGCHC 2 cut(s) 40, 204
SfaNI GCATC 3 cut(s) 227, 286, 735
SmiMI CAYNNNNRTG 2 cut(s) 165, 578
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 4 cut(s) 176, 247, 538, 612
SsiI CCGC 3 cut(s) 550, 630, 674
SspI AATATT 2 cut(s) 526, 753
SspMI CTAG 4 cut(s) 57, 116, 165, 291
StyD4I CCNGG 3 cut(s) 196, 367, 619
TaaI ACNGT 3 cut(s) 89, 312, 648
TaiI ACGT 2 cut(s) 304, 437
TaqI TCGA 1 cut(s) 189
TasI AATT 4 cut(s) 176, 247, 538, 612
TatI WGTACW 2 cut(s) 258, 582
TfiI GAWTC 1 cut(s) 762
Tru1I TTAA 2 cut(s) 32, 755
Tru9I TTAA 2 cut(s) 32, 755
TscAI CASTG 2 cut(s) 315, 651
TseI GCWGC 2 cut(s) 305, 689
TspDTI ATGAA 2 cut(s) 17, 754
TspRI CASTG 2 cut(s) 315, 651
Tth111I GACNNNGTC 1 cut(s) 47
XagI CCTNNNNNAGG 1 cut(s) 369
XbaI TCTAGA 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 4 cut(s) 57, 116, 165, 291
ZraI GACGTC 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.