Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002292

Physical Location & Seq

Genomic Coordinates Reverse (-)

30628468 .. 30629928

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1231200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGATGCAAGGCTGTTTGACGCTTCTCAGAAGGGAGATGTCCAACTTTTGCATCAATTGCTGGCAGAGAATCCACTTCTACTCCATAGCCTTGCGCTAACTTCCACAGATAATCCTTTACATGTTGCTTCGATTGCTGGGCATGTCGACTTTGTCAAGGAGGTTGTGAGGTTGAAACCAGATTATGTCGAAGAACTGAACCAGGATGGTTTTAGCCCCATGCATATTGCATCCGCCAATGGGTATTTGGAAATTGTAAGGGAGATGCTGAGGGTTGACCGGAGACTCTGCCAGCTAAACGGAAGAGATGAGTGGACTCCTCTTCATTATGCCGCTAGCAGGGGGAGGGTAGACGTAATTAGAGAAATGGTCTTGGCTTGTCCAGAAAGTGTTGAAGATGTGACCGTACAAGGGGAGACTGTTATTCACCTTGCTGTTAAGTGCAGCCAGTTTAAAGCAATCAAATTTTTGGTGGAATTGGTTGCAGAAACGAACAAGGTGGTGGAAGGATTAGTTGGCAGTGAAACAATTGCAGGAGCCTTGGAAGTAAATTCTGTAAACGATAGGGGTCTCACAGCTTTGGATCTGGTCTTCCCAAATGAAACCGGTGATTGGGAAATGGAGGCAATCCTTCGTGGTGCTGGAGCTTTGAGAGCAGGAGATATAGTCCACTCTGGTTTCCAATTCTCCAATTCTCATAGCCATAACCATAACCACACGTCATCAGAGACTCATCAGTTGCAGCAGGAGCCGCAGAAGACAAATAGGTGGGAATACTTCCAGTTCAAAAAGGGCAGAGACAGTCCTAGCGATGCACGTAACGCGCTGCTAGTTGTCGCTTCACTAGTGGCTACGGCCACCTTTCAAGTGGGACTCAACCCTCCAAATGGAATTTGGCAGGATAGTAGTGATGTGAATAATAATGGGACTGGCAGCAGCAATGAACCAGTACACTTGGCAGGAAGGTCCATCATGGGTTCTTATAGTGAAGTTTCATTCGTCATTTTTGTGGTTTTCAACTCGATTGGATTTTACTTTTCACTTTACACCATGATCGTCCTCACAGTCAATTTCCCTCTCCAGTTGGAGCTTCAAATCTGCATCATAGCGGTATACACCACCTACAGCACTGCGGTTGTCAACATTGCACCATCATATAACACTTGGCTCTTTATCACTGTGTTCACATCGGTTTTGCCTTTTTTGGTCGGAATTTCTGCCAAATTGGCTAGGCACCCGGTCACGATCAGGCTTACAAAACCTCTCGGAAAATGGATCCTTCGGTTCTTTGAATTAATTTGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 PGG

Protein Analysis

436

Amino Acids

48.41

Weight (kDa)

5.67

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	5 - 90	7.1e-10	Ankyrin repeats (3 copies)
Ank_2	PF12796	100 - 165	5.5e-09	Ankyrin repeats (3 copies)
PGG	PF13962	271 - 386	9.9e-17	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51160
fragaria_vesca	FvH4_7g26641 FvH4_7g26643 FvH4_7g26670
malus_domestica	MD01G1175400.v1.1 MD07G1241300.v1.1 MD07G1241500.v1.1 MD12G1230800.v1.1 MD12G1230900.v1.1 MD12G1231100.v1.1 MD12G1231200.v1.1
prunus_persica	Prupe.2G270400_v2.0.a1 Prupe.2G270500_v2.0.a1
pyrus_communis	pycom07g21780 pycom07g21790 pycom07g21800 pycom07g21860 pycom07g21970 pycom12g21410
rosa_chinensis	RchiOBHm_Chr1g0373271 RchiOBHm_Chr1g0373281
rosa_laevigata	RLG00000026830 RLG00000026831 RLG00000026832
rosa_multiflora	Rmu_co8287043.1_g000001 Rmu_sc0000170.1_g000005 Rmu_ssc0000435.1_g000001 Rmu_ssc0000435.1_g000002
rosa_rugosa	Rorug01G0376800 Rorug01G0376800
rosa_samantha	Rh1AG385600 Rh1AG385700 Rh1BG349800 Rh1BG349900 Rh1CG363000 Rh1CG363100 Rh1DG380500 Rh1DG380600 Rh1DG380700 Rh7DG228200
rosa_wichuraiana	Rw1G034920 Rw1G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1233
AccI	GTMKAC	3 cut(s)	147, 351, 1113
AccII	CGCG	1 cut(s)	824
AciI	CCGC	5 cut(s)	234, 333, 752, 1109, 1133
AclWI	GGATC	3 cut(s)	591, 1270, 1283
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	4 cut(s)	464, 550, 891, 1212
AfaI	GTAC	2 cut(s)	408, 951
AfiI	CCNNNNNNNGG	5 cut(s)	240, 339, 411, 612, 887
AflIII	ACRYGT	2 cut(s)	121, 717
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	7 cut(s)	175, 395, 787, 866, 1018, 1094, 1292
AhlI	ACTAGT	1 cut(s)	844
AjiI	CACGTC	1 cut(s)	720
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	4 cut(s)	295, 578, 647, 1090
AluI	AGCT	4 cut(s)	295, 578, 647, 1090
Alw26I	GTCTC	5 cut(s)	277, 410, 575, 722, 792
AlwI	GGATC	3 cut(s)	591, 1270, 1283
AoxI	GGCC	1 cut(s)	855
ApeKI	GCWGC	5 cut(s)	444, 742, 826, 933, 936
ApoI	RAATTY	4 cut(s)	464, 550, 891, 1212
AseI	ATTAAT	1 cut(s)	1295
AsiGI	ACCGGT	1 cut(s)	605
AspLEI	GCGC	2 cut(s)	97, 826
AspS9I	GGNCC	1 cut(s)	966
AsuC2I	CCSGG	1 cut(s)	1238
AsuHPI	GGTGA	2 cut(s)	419, 620
AsuNHI	GCTAGC	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	966
BamHI	GGATCC	1 cut(s)	1275
BanI	GGYRCC	1 cut(s)	1233
BbsI	GAAGAC	2 cut(s)	583, 764
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	5 cut(s)	456, 754, 813, 945, 948
BccI	CCATC	3 cut(s)	200, 977, 1159
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	1238
BcoDI	GTCTC	5 cut(s)	277, 410, 575, 722, 792
BcuI	ACTAGT	1 cut(s)	844
BfaI	CTAG	5 cut(s)	336, 807, 830, 845, 1230
BfmI	CTRYAG	1 cut(s)	1123
BglI	GCCNNNNNGGC	1 cut(s)	1226
BisI	GCNGC	7 cut(s)	333, 445, 743, 752, 827, 934, 937
BlsI	GCNGC	7 cut(s)	334, 446, 744, 753, 828, 935, 938
Bme1390I	CCNGG	2 cut(s)	203, 1238
Bme18I	GGWCC	1 cut(s)	966
BmgBI	CACGTC	1 cut(s)	720
BmgT120I	GGNCC	1 cut(s)	966
BmiI	GGNNCC	4 cut(s)	538, 750, 1235, 1277
BmrFI	CCNGG	2 cut(s)	203, 1238
BmsI	GCATC	5 cut(s)	61, 239, 255, 802, 1110
BmtI	GCTAGC	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	583, 764
BpmI	CTGGAG	2 cut(s)	663, 1064
Bpu10I	CCTNAGC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	1238
BsaAI	YACGTR	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	540
BsaWI	WCCGGW	2 cut(s)	279, 605
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 651, 681
Bsc4I	CCNNNNNNNGG	5 cut(s)	240, 339, 411, 612, 887
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	5 cut(s)	448, 781, 934, 947, 1081
Bse3DI	GCAATG	2 cut(s)	946, 1143
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	3 cut(s)	10, 211, 230
BseLI	CCNNNNNNNGG	5 cut(s)	240, 339, 411, 612, 887
BseMI	GCAATG	2 cut(s)	946, 1143
BseMII	CTCAG	2 cut(s)	41, 260
BseNI	ACTGG	5 cut(s)	448, 781, 934, 947, 1081
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	5 cut(s)	456, 754, 813, 945, 948
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	1 cut(s)	857
BshNI	GGYRCC	1 cut(s)	1233
BshTI	ACCGGT	1 cut(s)	605
BsiSI	CCGG	3 cut(s)	280, 606, 1238
BslFI	GGGAC	2 cut(s)	885, 940
BslI	CCNNNNNNNGG	5 cut(s)	240, 339, 411, 612, 887
BsmAI	GTCTC	5 cut(s)	277, 410, 575, 722, 792
BsmFI	GGGAC	2 cut(s)	885, 940
BsnI	GGCC	1 cut(s)	857
Bso31I	GGTCTC	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	583, 1053, 1245, 1275
BspACI	CCGC	5 cut(s)	234, 333, 752, 1109, 1133
BspANI	GGCC	1 cut(s)	857
BspCNI	CTCAG	2 cut(s)	40, 261
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	4 cut(s)	538, 750, 1235, 1277
BspOI	GCTAGC	1 cut(s)	339
BspPI	GGATC	3 cut(s)	591, 1270, 1283
BspT107I	GGYRCC	1 cut(s)	1233
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	2 cut(s)	946, 1143
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	5 cut(s)	448, 781, 934, 947, 1081
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	4 cut(s)	583, 1053, 1245, 1275
BssNAI	GTATAC	1 cut(s)	1114
BssT1I	CCWWGG	1 cut(s)	540
Bst1107I	GTATAC	1 cut(s)	1114
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	5 cut(s)	406, 421, 803, 1066, 1180
Bst6I	CTCTTC	2 cut(s)	298, 327
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	63, 293, 337
BstDEI	CTNAG	2 cut(s)	27, 269
BstF5I	GGATG	3 cut(s)	10, 211, 230
BstFNI	CGCG	1 cut(s)	824
BstHHI	GCGC	2 cut(s)	97, 826
BstKTI	GATC	4 cut(s)	586, 1056, 1248, 1278
BstMAI	GTCTC	5 cut(s)	277, 410, 575, 722, 792
BstMBI	GATC	4 cut(s)	583, 1053, 1245, 1275
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 134, 653, 748, 751, 821, 1226
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	2 cut(s)	125, 146
BstSCI	CCNGG	2 cut(s)	201, 1236
BstSFI	CTRYAG	1 cut(s)	1123
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	5 cut(s)	456, 754, 813, 945, 948
BstV2I	GAAGAC	2 cut(s)	583, 764
BstX2I	RGATCY	2 cut(s)	583, 1275
BstYI	RGATCY	2 cut(s)	583, 1275
BstZ17I	GTATAC	1 cut(s)	1114
BsuRI	GGCC	1 cut(s)	857
BtgZI	GCGATG	1 cut(s)	825
BtrI	CACGTC	1 cut(s)	720
BtsCI	GGATG	3 cut(s)	10, 211, 230
BtsI	GCAGTG	2 cut(s)	526, 1128
BtsIMutI	CAGTG	3 cut(s)	526, 1128, 1176
Cac8I	GCNNGC	3 cut(s)	63, 293, 337
CfoI	GCGC	2 cut(s)	97, 826
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	1 cut(s)	966
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	407, 950
CspAI	ACCGGT	1 cut(s)	605
CviAII	CATG	5 cut(s)	122, 143, 220, 973, 1051
CviQI	GTAC	2 cut(s)	407, 950
DdeI	CTNAG	2 cut(s)	27, 269
DpnI	GATC	4 cut(s)	585, 1055, 1247, 1277
DpnII	GATC	4 cut(s)	583, 1053, 1245, 1275
DraI	TTTAAA	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	2 cut(s)	298, 327
EarI	CTCTTC	2 cut(s)	298, 327
EciI	GGCGGA	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	966
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	5 cut(s)	125, 146, 223, 976, 1054
FaqI	GGGAC	2 cut(s)	885, 940
FatI	CATG	5 cut(s)	121, 142, 219, 972, 1050
FblI	GTMKAC	3 cut(s)	147, 351, 1113
Fnu4HI	GCNGC	7 cut(s)	333, 445, 743, 752, 827, 934, 937
FokI	GGATG	3 cut(s)	17, 217, 218
Fsp4HI	GCNGC	7 cut(s)	333, 445, 743, 752, 827, 934, 937
FspBI	CTAG	5 cut(s)	336, 807, 830, 845, 1230
GlaI	GCGC	2 cut(s)	96, 825
GluI	GCNGC	7 cut(s)	333, 445, 743, 752, 827, 934, 937
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	663, 1064
HaeIII	GGCC	1 cut(s)	857
HapII	CCGG	3 cut(s)	280, 606, 1238
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	97, 826
Hin1II	CATG	5 cut(s)	125, 146, 223, 976, 1054
Hin6I	GCGC	2 cut(s)	95, 824
HinP1I	GCGC	2 cut(s)	95, 824
HincII	GTYRAC	3 cut(s)	148, 277, 1141
HindII	GTYRAC	3 cut(s)	148, 277, 1141
HinfI	GANTC	5 cut(s)	70, 285, 316, 730, 873
HpaII	CCGG	3 cut(s)	280, 606, 1238
HphI	GGTGA	2 cut(s)	419, 620
Hpy188I	TCNGA	4 cut(s)	30, 727, 1211, 1268
Hpy188III	TCNNGA	2 cut(s)	383, 1243
HpyAV	CCTTC	5 cut(s)	25, 500, 641, 957, 1289
HpyCH4III	ACNGT	5 cut(s)	406, 421, 803, 1066, 1180
HpyCH4IV	ACGT	3 cut(s)	354, 719, 817
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 134, 653, 748, 751, 821, 1226
HpyF3I	CTNAG	2 cut(s)	27, 269
HpySE526I	ACGT	3 cut(s)	354, 719, 817
Hsp92II	CATG	5 cut(s)	125, 146, 223, 976, 1054
HspAI	GCGC	2 cut(s)	95, 824
Kzo9I	GATC	4 cut(s)	583, 1053, 1245, 1275
LmnI	GCTCC	4 cut(s)	536, 644, 748, 1087
Lsp1109I	GCAGC	5 cut(s)	456, 754, 813, 945, 948
LweI	GCATC	5 cut(s)	61, 239, 255, 802, 1110
MaeI	CTAG	5 cut(s)	336, 807, 830, 845, 1230
MaeII	ACGT	3 cut(s)	354, 719, 817
MaeIII	GTNAC	3 cut(s)	400, 818, 1240
MalI	GATC	4 cut(s)	585, 1055, 1247, 1277
MboI	GATC	4 cut(s)	583, 1053, 1245, 1275
MboII	GAAGA	6 cut(s)	203, 314, 315, 407, 583, 769
MfeI	CAATTG	2 cut(s)	56, 528
MflI	RGATCY	2 cut(s)	583, 1275
MlyI	GAGTC	4 cut(s)	279, 310, 724, 867
MmeI	TCCRAC	3 cut(s)	67, 1065, 1189
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	3 cut(s)	438, 453, 1295
MslI	CAYNNNNRTG	1 cut(s)	1007
MspI	CCGG	3 cut(s)	280, 606, 1238
MspR9I	CCNGG	2 cut(s)	203, 1238
MunI	CAATTG	2 cut(s)	56, 528
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	7 cut(s)	58, 134, 653, 748, 751, 821, 1226
NciI	CCSGG	1 cut(s)	1238
NdeII	GATC	4 cut(s)	583, 1053, 1245, 1275
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	5 cut(s)	125, 146, 223, 976, 1054
NlaIV	GGNNCC	4 cut(s)	538, 750, 1235, 1277
NmuCI	GTSAC	2 cut(s)	400, 1240
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	2 cut(s)	125, 146
PciI	ACATGT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	7 cut(s)	334, 446, 744, 753, 828, 935, 938
PleI	GAGTC	4 cut(s)	279, 310, 724, 867
PpsI	GAGTC	4 cut(s)	279, 310, 724, 867
Ppu21I	YACGTR	1 cut(s)	818
PscI	ACATGT	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	1295
Psp6I	CCWGG	1 cut(s)	201
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	4 cut(s)	538, 750, 1235, 1277
PspPI	GGNCC	1 cut(s)	966
PsuI	RGATCY	2 cut(s)	583, 1275
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	408, 951
RsaNI	GTAC	2 cut(s)	407, 950
RseI	CAYNNNNRTG	1 cut(s)	1007
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	438, 453, 1295
SatI	GCNGC	7 cut(s)	333, 445, 743, 752, 827, 934, 937
Sau3AI	GATC	4 cut(s)	583, 1053, 1245, 1275
Sau96I	GGNCC	1 cut(s)	966
SchI	GAGTC	4 cut(s)	279, 310, 724, 867
ScrFI	CCNGG	2 cut(s)	203, 1238
SfaNI	GCATC	5 cut(s)	61, 239, 255, 802, 1110
SfcI	CTRYAG	1 cut(s)	1123
SinI	GGWCC	1 cut(s)	966
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SpeI	ACTAGT	1 cut(s)	844
SsiI	CCGC	5 cut(s)	234, 333, 752, 1109, 1133
SspMI	CTAG	5 cut(s)	336, 807, 830, 845, 1230
StyD4I	CCNGG	2 cut(s)	201, 1236
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	5 cut(s)	406, 421, 803, 1066, 1180
TaiI	ACGT	3 cut(s)	357, 722, 820
TaqI	TCGA	4 cut(s)	131, 147, 189, 1022
TatI	WGTACW	1 cut(s)	949
TauI	GCSGC	2 cut(s)	335, 754
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	438, 453, 1295
Tru9I	TTAA	3 cut(s)	438, 453, 1295
TscAI	CASTG	3 cut(s)	526, 1135, 1183
TseFI	GTSAC	2 cut(s)	400, 1240
TseI	GCWGC	5 cut(s)	444, 742, 826, 933, 936
Tsp45I	GTSAC	2 cut(s)	400, 1240
TspDTI	ATGAA	4 cut(s)	314, 615, 957, 984
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	3 cut(s)	526, 1135, 1183
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	966
VspI	ATTAAT	1 cut(s)	1295
XapI	RAATTY	4 cut(s)	464, 550, 891, 1212
XceI	RCATGY	2 cut(s)	125, 146
XcmI	CCANNNNNNNNNTGG	3 cut(s)	244, 865, 891
XmiI	GTMKAC	3 cut(s)	147, 351, 1113
XspI	CTAG	5 cut(s)	336, 807, 830, 845, 1230
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.