Rh1DG380600

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002292
Physical Location & Seq
Forward (+)
60246833 .. 60248457
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG380600.1

Sequence Viewer

Length: 1326 bp
ATGGAATGGCTAGTTGGCATTGGAACTGCTCCAGGGGGTGTGTTGGAAGTAGACAGTGTAAATCAGAGGGGTCTCACTGCTCTTGATCTGCTACTACTTTTCCCTAGTGAAGCCGGTGATAGGGAAATTGAGGAGATCCTTCGTGATGCTGGAGCTTTGAGAGCACGAGAGAGAGTCCAGTCTAGTTCTGATGTACCTTCATATGCTCAAAACCATAGCCAAATGGCATCAGAGACTCATCAACAGCAGCCAAATAATGCGGCTTCGACAGCACTAGATACAGTCCATTCTAGTTCGGGTCAGAATCATAACCAAATGGCACAACAGGCCCATCAAGAGCAGGTGGCTCTGACAGCAATAGATATAGTCCATCCTAGTTCTGATGTACCTTTACTTAATCAGAATCATAACCAATTGGCACAACAGACCAATCAAGAGCAGGGGGCTTCAACAGCAATAGATATAGTCCATCCTAGTTCTGATGTGCCTTCACTTAATCAGAATCATAACCAAATGGCACCACAAGCCCATCAAGAGCAGGGTGCTTCGACAGCGATAGATATAGTCCATCCGAGTTCTGATGTGCCTTCACTTAATCAGAATCATAACCAAATAGCACCACAGACCACTCAAGAACAGCCAAATAATGTGGCTTCGACAACATTAGCTCCAGTCCATCCTGTTTCTGCTCAAATCACTGGCTCTCCTAGTCAGAACCGCCCTCAAATTGGATCACAGACTGATCAAGAGGAGCTAGACGATATGGAGTACTTCAAATTCAAAAAGGGTAAAGAACCCGTTGATAATGCACGTACCGCGCTGTTAGTTATAGCTGTATTAGTGGCTACAGCGAGCTATGAAATTGCACTCAACCCTCCAGGCGGTCTTTGGTCTGACACAAACTTGAGCACAAATGGCACTGAGCCACCACACCTTGCAGGGACTTCCAATATAGCTTCTTATTTTCCAGTTTACACCATCTTTGGAGCCATTTTAAACTGCATTGGGTTTTCAGTTTCTCTTCACATGATCTATGTCCTCACAACCAATTTCCCCTTGCGGTTGGAGCTTATTGTTTGTGGCCTTGCAATGTACGTAACTTTCATCAATGGATTGATTACTATTTCTCCAGGTGAGACCGCAGGTTGGTACTCACTGTTTGCACTTACGCCAGCTCTGCCTCCGGTGGTACTATTTGCTGCCAGAAGGGTTAGGACACTTTTGATCAAGCTTAGAGACCTTGCTGCCAGAACGGTTGGGAAACTTTGGATCAAGCTTAAAACCCTTCTAATTAGCTGGTGGCCGAATTTGAGTAGATTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

441

Amino Acids

47.85

Weight (kDa)

5.37

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 266 - 351 3.5e-12 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 2 cut(s) 331, 1133
AccB1I GGYRCC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 818
AciI CCGC 6 cut(s) 260, 718, 816, 882, 1060, 1140
AclWI GGATC 3 cut(s) 130, 739, 1277
AcoI YGGCCR 1 cut(s) 1301
AcsI RAATTY 2 cut(s) 776, 1306
AfaI GTAC 7 cut(s) 195, 387, 770, 814, 1094, 1151, 1191
AfiI CCNNNNNNNGG 4 cut(s) 120, 728, 881, 1146
AgsI TTSAA 3 cut(s) 450, 775, 781
AjnI CCWGG 3 cut(s) 31, 877, 1129
AjuI GAANNNNNNNTTGG 1 cut(s) 29
Alw21I GWGCWC 2 cut(s) 166, 911
Alw26I GTCTC 4 cut(s) 77, 227, 1130, 1230
AlwI GGATC 3 cut(s) 130, 739, 1277
AoxI GGCC 3 cut(s) 327, 1081, 1301
ApeKI GCWGC 3 cut(s) 247, 1199, 1244
ApoI RAATTY 2 cut(s) 776, 1306
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 128, 1145
BanI GGYRCC 1 cut(s) 517
BauI CACGAG 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 166, 911
BbvI GCAGC 3 cut(s) 259, 1186, 1231
BccI CCATC 7 cut(s) 339, 378, 477, 537, 576, 684, 986
BciT130I CCWGG 3 cut(s) 33, 879, 1131
BclI TGATCA 2 cut(s) 742, 1224
BcoDI GTCTC 4 cut(s) 77, 227, 1130, 1230
BfaI CTAG 9 cut(s) 11, 105, 183, 275, 291, 375, 474, 708, 755
BfmI CTRYAG 1 cut(s) 846
BfuAI ACCTGC 2 cut(s) 331, 1133
BisI GCNGC 4 cut(s) 248, 261, 1200, 1245
BlsI GCNGC 4 cut(s) 249, 262, 1201, 1246
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 3 cut(s) 33, 879, 1131
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 519, 988
BmrFI CCNGG 3 cut(s) 33, 879, 1131
BmsI GCATC 2 cut(s) 136, 236
BpmI CTGGAG 5 cut(s) 15, 171, 654, 861, 1113
BpuEI CTTGAG 2 cut(s) 615, 925
BsaAI YACGTR 2 cut(s) 812, 1096
BsaI GGTCTC 3 cut(s) 77, 1130, 1230
BsaJI CCNNGG 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 1183
BsaXI ACNNNNNCTCC 6 cut(s) 652, 682, 688, 718, 1111, 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 728, 881, 1146
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 4 cut(s) 178, 671, 703, 968
Bse3DI GCAATG 1 cut(s) 1095
BseBI CCWGG 3 cut(s) 33, 879, 1131
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 4 cut(s) 370, 469, 568, 676
BseLI CCNNNNNNNGG 4 cut(s) 120, 728, 881, 1146
BseMI GCAATG 1 cut(s) 1095
BseMII CTCAG 1 cut(s) 912
BseNI ACTGG 4 cut(s) 178, 671, 703, 968
BseRI GAGGAG 2 cut(s) 146, 764
BseXI GCAGC 3 cut(s) 259, 1186, 1231
Bsh1236I CGCG 1 cut(s) 818
BshFI GGCC 3 cut(s) 329, 1083, 1303
BshNI GGYRCC 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 166, 911
BsiSI CCGG 2 cut(s) 114, 1184
BslFI GGGAC 1 cut(s) 955
BslI CCNNNNNNNGG 4 cut(s) 120, 728, 881, 1146
BsmAI GTCTC 4 cut(s) 77, 227, 1130, 1230
BsmFI GGGAC 1 cut(s) 955
BsnI GGCC 3 cut(s) 329, 1083, 1303
Bso31I GGTCTC 3 cut(s) 77, 1130, 1230
Bsp1286I GDGCHC 2 cut(s) 166, 911
Bsp143I GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
BspACI CCGC 6 cut(s) 260, 718, 816, 882, 1060, 1140
BspANI GGCC 3 cut(s) 329, 1083, 1303
BspCNI CTCAG 1 cut(s) 913
BspFNI CGCG 1 cut(s) 818
BspLI GGNNCC 2 cut(s) 519, 988
BspMI ACCTGC 2 cut(s) 331, 1133
BspPI GGATC 3 cut(s) 130, 739, 1277
BspT107I GGYRCC 1 cut(s) 517
BspTNI GGTCTC 3 cut(s) 77, 1130, 1230
BsrDI GCAATG 1 cut(s) 1095
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 4 cut(s) 178, 671, 703, 968
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 3 cut(s) 33, 879, 1131
Bst4CI ACNGT 4 cut(s) 56, 283, 1158, 1255
Bst6I CTCTTC 1 cut(s) 1026
BstBAI YACGTR 2 cut(s) 812, 1096
BstC8I GCNNGC 2 cut(s) 853, 1173
BstDEI CTNAG 2 cut(s) 921, 1232
BstF5I GGATG 4 cut(s) 370, 469, 568, 676
BstFNI CGCG 1 cut(s) 818
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 7 cut(s) 88, 138, 734, 745, 1032, 1227, 1272
BstMAI GTCTC 4 cut(s) 77, 227, 1130, 1230
BstMBI GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
BstNI CCWGG 3 cut(s) 33, 879, 1131
BstSCI CCNGG 3 cut(s) 31, 877, 1129
BstSFI CTRYAG 1 cut(s) 846
BstSNI TACGTA 1 cut(s) 1096
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 3 cut(s) 259, 1186, 1231
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 3 cut(s) 329, 1083, 1303
BtsCI GGATG 4 cut(s) 370, 469, 568, 676
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 5 cut(s) 61, 75, 696, 918, 1154
BveI ACCTGC 2 cut(s) 331, 1133
Cac8I GCNNGC 2 cut(s) 853, 1173
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 7 cut(s) 194, 386, 769, 813, 1093, 1150, 1190
CspCI CAANNNNNGTGG 2 cut(s) 630, 665
CviAII CATG 1 cut(s) 1027
CviQI GTAC 7 cut(s) 194, 386, 769, 813, 1093, 1150, 1190
DdeI CTNAG 2 cut(s) 921, 1232
DpnI GATC 7 cut(s) 87, 137, 733, 744, 1031, 1226, 1271
DpnII GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
DraI TTTAAA 1 cut(s) 996
EaeI YGGCCR 1 cut(s) 1301
Eam1104I CTCTTC 1 cut(s) 1026
EarI CTCTTC 1 cut(s) 1026
Eco105I TACGTA 1 cut(s) 1096
Eco31I GGTCTC 3 cut(s) 77, 1130, 1230
EcoRII CCWGG 3 cut(s) 31, 877, 1129
FaeI CATG 1 cut(s) 1030
FaqI GGGAC 1 cut(s) 955
FatI CATG 1 cut(s) 1026
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 2 cut(s) 742, 1224
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 248, 261, 1200, 1245
FokI GGATG 4 cut(s) 357, 456, 555, 663
Fsp4HI GCNGC 4 cut(s) 248, 261, 1200, 1245
FspBI CTAG 9 cut(s) 11, 105, 183, 275, 291, 375, 474, 708, 755
GlaI GCGC 1 cut(s) 819
GluI GCNGC 4 cut(s) 248, 261, 1200, 1245
GsuI CTGGAG 5 cut(s) 15, 171, 654, 861, 1113
HaeIII GGCC 3 cut(s) 329, 1083, 1303
HapII CCGG 2 cut(s) 114, 1184
HhaI GCGC 1 cut(s) 820
Hin1II CATG 1 cut(s) 1030
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HindIII AAGCTT 2 cut(s) 1229, 1274
HinfI GANTC 7 cut(s) 174, 235, 304, 403, 502, 601, 1317
HpaII CCGG 2 cut(s) 114, 1184
HphI GGTGA 2 cut(s) 128, 1145
Hpy166II GTNNAC 2 cut(s) 52, 973
Hpy188III TCNNGA 7 cut(s) 83, 143, 335, 434, 533, 632, 746
Hpy8I GTNNAC 2 cut(s) 52, 973
HpyAV CCTTC 6 cut(s) 149, 207, 498, 597, 1200, 1295
HpyCH4III ACNGT 4 cut(s) 56, 283, 1158, 1255
HpyCH4IV ACGT 2 cut(s) 811, 1095
HpyCH4V TGCA 6 cut(s) 809, 866, 938, 1002, 1088, 1163
HpyF3I CTNAG 2 cut(s) 921, 1232
HpySE526I ACGT 2 cut(s) 811, 1095
Hsp92II CATG 1 cut(s) 1030
HspAI GCGC 1 cut(s) 818
Ksp22I TGATCA 2 cut(s) 742, 1224
Kzo9I GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
LmnI GCTCC 6 cut(s) 34, 152, 673, 751, 986, 1066
Lsp1109I GCAGC 3 cut(s) 259, 1186, 1231
LweI GCATC 2 cut(s) 136, 236
MaeI CTAG 9 cut(s) 11, 105, 183, 275, 291, 375, 474, 708, 755
MaeII ACGT 2 cut(s) 811, 1095
MaeIII GTNAC 1 cut(s) 1096
MalI GATC 7 cut(s) 87, 137, 733, 744, 1031, 1226, 1271
MboI GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
MboII GAAGA 1 cut(s) 1013
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 166, 911
MluCI AATT 8 cut(s) 126, 413, 726, 776, 861, 1048, 1290, 1306
MlyI GAGTC 2 cut(s) 183, 229
MmeI TCCRAC 2 cut(s) 24, 1044
MnlI CCTC 7 cut(s) 60, 124, 732, 742, 885, 1049, 1191
MseI TTAA 6 cut(s) 396, 495, 594, 995, 1278, 1324
MspI CCGG 2 cut(s) 114, 1184
MspR9I CCNGG 3 cut(s) 33, 879, 1131
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 3 cut(s) 33, 879, 1131
MvnI CGCG 1 cut(s) 818
NdeI CATATG 1 cut(s) 202
NdeII GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
NlaIII CATG 1 cut(s) 1030
NlaIV GGNNCC 2 cut(s) 519, 988
PaqCI CACCTGC 1 cut(s) 331
PfeI GAWTC 5 cut(s) 304, 403, 502, 601, 1317
PkrI GCNGC 4 cut(s) 249, 262, 1201, 1246
PleI GAGTC 2 cut(s) 182, 229
PpsI GAGTC 2 cut(s) 182, 229
Ppu21I YACGTR 2 cut(s) 812, 1096
Psp6I CCWGG 3 cut(s) 31, 877, 1129
PspGI CCWGG 3 cut(s) 31, 877, 1129
PspN4I GGNNCC 2 cut(s) 519, 988
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 135
RsaI GTAC 7 cut(s) 195, 387, 770, 814, 1094, 1151, 1191
RsaNI GTAC 7 cut(s) 194, 386, 769, 813, 1093, 1150, 1190
SaqAI TTAA 6 cut(s) 396, 495, 594, 995, 1278, 1324
SatI GCNGC 4 cut(s) 248, 261, 1200, 1245
Sau3AI GATC 7 cut(s) 85, 135, 731, 742, 1029, 1224, 1269
Sau96I GGNCC 1 cut(s) 328
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 2 cut(s) 183, 229
ScrFI CCNGG 3 cut(s) 33, 879, 1131
SduI GDGCHC 2 cut(s) 166, 911
SfaNI GCATC 2 cut(s) 136, 236
SfcI CTRYAG 1 cut(s) 846
SmlI CTYRAG 2 cut(s) 630, 904
SmoI CTYRAG 2 cut(s) 630, 904
SnaBI TACGTA 1 cut(s) 1096
Sse9I AATT 8 cut(s) 126, 413, 726, 776, 861, 1048, 1290, 1306
SsiI CCGC 6 cut(s) 260, 718, 816, 882, 1060, 1140
SspMI CTAG 9 cut(s) 11, 105, 183, 275, 291, 375, 474, 708, 755
StyD4I CCNGG 3 cut(s) 31, 877, 1129
TaaI ACNGT 4 cut(s) 56, 283, 1158, 1255
TaiI ACGT 2 cut(s) 814, 1098
TaqI TCGA 3 cut(s) 266, 548, 656
TasI AATT 8 cut(s) 126, 413, 726, 776, 861, 1048, 1290, 1306
TatI WGTACW 1 cut(s) 768
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 5 cut(s) 304, 403, 502, 601, 1317
Tru1I TTAA 6 cut(s) 396, 495, 594, 995, 1278, 1324
Tru9I TTAA 6 cut(s) 396, 495, 594, 995, 1278, 1324
TscAI CASTG 5 cut(s) 61, 82, 703, 925, 1161
TseI GCWGC 3 cut(s) 247, 1199, 1244
TspDTI ATGAA 4 cut(s) 189, 873, 1093, 1309
TspRI CASTG 5 cut(s) 61, 82, 703, 925, 1161
XapI RAATTY 2 cut(s) 776, 1306
XcmI CCANNNNNNNNNTGG 1 cut(s) 885
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 9 cut(s) 11, 105, 183, 275, 291, 375, 474, 708, 755
ZrmI AGTACT 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.