Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002292

Physical Location & Seq

Genomic Coordinates Reverse (-)

30541142 .. 30541729

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1230800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATGCAAGGCTGTTTGACGCTTCTCAGACGGGAGATGTCCAACTTCTGCATCGATTGCTGGCAGAGAATCCACTTCTACTCCATAGCCTTGCCCTAACTTCCACAGATAATCCTTTACATGTTGCTTCGATTGCTGGGCATGTCGACTTTGTCAAGGAGATTGTGAGGTTGAAACCAGATTATGTCGAAGAACTGAACCGGGATGGTTTTAGCCCCATGCATATTGCATCCGCCAATGGGTATTTGGAAATTGTAAGGGAGATGCTGAGGGTTGACCGGAGACTCTGCCAGCTAAACGGAAGAGATGAGTGGACTCCTCTCCACTATGCCGCTAGCAGGGGGAGGGTAGACGTAATTAGAGAAATGGTCTTGGCTTGTCCAGAAAGTGTTGAAGATGTGACCGTACAAGGGGAGACTGTTATTCACCTTGCTGTTAAGTGCAGCCAGTTTAAAGCAATTAAATTTTTGGTGGAATTGGTTGCAGAAGCGAACAAGGTGTACATCTTGAACATGAAGGATAAGCATGGCGACACAGTTCTTCATCTAGCAACCTGGAAAAAACAACATCAGGCAAGTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 PGG

Protein Analysis

196

Amino Acids

22.0

Weight (kDa)

6.19

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	5 - 90	3.2e-10	Ankyrin repeats (3 copies)
Ank_4	PF13637	40 - 86	5.7e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	100 - 165	1e-09	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51160
fragaria_vesca	FvH4_7g26641 FvH4_7g26643 FvH4_7g26670
malus_domestica	MD01G1175400.v1.1 MD07G1241300.v1.1 MD07G1241500.v1.1 MD12G1230800.v1.1 MD12G1230900.v1.1 MD12G1231100.v1.1 MD12G1231200.v1.1
prunus_persica	Prupe.2G270400_v2.0.a1 Prupe.2G270500_v2.0.a1
pyrus_communis	pycom07g21780 pycom07g21790 pycom07g21800 pycom07g21860 pycom07g21970 pycom12g21410
rosa_chinensis	RchiOBHm_Chr1g0373271 RchiOBHm_Chr1g0373281
rosa_laevigata	RLG00000026830 RLG00000026831 RLG00000026832
rosa_multiflora	Rmu_co8287043.1_g000001 Rmu_sc0000170.1_g000005 Rmu_ssc0000435.1_g000001 Rmu_ssc0000435.1_g000002
rosa_rugosa	Rorug01G0376800 Rorug01G0376800
rosa_samantha	Rh1AG385600 Rh1AG385700 Rh1BG349800 Rh1BG349900 Rh1CG363000 Rh1CG363100 Rh1DG380500 Rh1DG380600 Rh1DG380700 Rh7DG228200
rosa_wichuraiana	Rw1G034920 Rw1G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	147, 351
AciI	CCGC	2 cut(s)	234, 333
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	3 cut(s)	408, 503, 580
AfiI	CCNNNNNNNGG	3 cut(s)	240, 339, 411
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	175, 395, 511
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	277, 410
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	419
AsuNHI	GCTAGC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	277, 410
BfaI	CTAG	2 cut(s)	336, 548
BisI	GCNGC	2 cut(s)	333, 445
BlsI	GCNGC	2 cut(s)	334, 446
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	2 cut(s)	203, 556
BmrFI	CCNGG	2 cut(s)	203, 556
BmsI	GCATC	3 cut(s)	61, 239, 255
BmtI	GCTAGC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 339, 411
Bse1I	ACTGG	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	556
BseCI	ATCGAT	1 cut(s)	55
BseGI	GGATG	3 cut(s)	10, 211, 230
BseLI	CCNNNNNNNGG	3 cut(s)	240, 339, 411
BseMII	CTCAG	2 cut(s)	41, 260
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	456
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	463
BshVI	ATCGAT	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	202, 280
BslI	CCNNNNNNNGG	3 cut(s)	240, 339, 411
BsmAI	GTCTC	2 cut(s)	277, 410
Bsp1407I	TGTACA	1 cut(s)	501
BspACI	CCGC	2 cut(s)	234, 333
BspCNI	CTCAG	2 cut(s)	40, 261
BspDI	ATCGAT	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	3 cut(s)	406, 421, 538
Bst6I	CTCTTC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	63, 293, 337
BstDEI	CTNAG	2 cut(s)	27, 269
BstF5I	GGATG	3 cut(s)	10, 211, 230
BstMAI	GTCTC	2 cut(s)	277, 410
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 134
BstNI	CCWGG	1 cut(s)	556
BstNSI	RCATGY	2 cut(s)	125, 146
BstSCI	CCNGG	2 cut(s)	201, 554
BstV1I	GCAGC	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	55
BsuTUI	ATCGAT	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	10, 211, 230
Cac8I	GCNNGC	3 cut(s)	63, 293, 337
ClaI	ATCGAT	1 cut(s)	55
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	3 cut(s)	407, 502, 579
CviAII	CATG	5 cut(s)	122, 143, 220, 514, 527
CviJI	RGCY	6 cut(s)	13, 90, 216, 295, 377, 447
CviKI_1	RGCY	6 cut(s)	13, 90, 216, 295, 377, 447
CviQI	GTAC	3 cut(s)	407, 502, 579
DdeI	CTNAG	2 cut(s)	27, 269
DraI	TTTAAA	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	554
EcoT22I	ATGCAT	1 cut(s)	225
FaeI	CATG	5 cut(s)	125, 146, 223, 517, 530
FaiI	YATR	9 cut(s)	87, 123, 144, 186, 221, 225, 330, 515, 528
FatI	CATG	5 cut(s)	121, 142, 219, 513, 526
FblI	GTMKAC	2 cut(s)	147, 351
Fnu4HI	GCNGC	2 cut(s)	333, 445
FokI	GGATG	3 cut(s)	17, 217, 218
Fsp4HI	GCNGC	2 cut(s)	333, 445
FspBI	CTAG	2 cut(s)	336, 548
GluI	GCNGC	2 cut(s)	333, 445
GsaI	CCCAGC	1 cut(s)	141
HapII	CCGG	2 cut(s)	202, 280
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	125, 146, 223, 517, 530
HincII	GTYRAC	2 cut(s)	148, 277
HindII	GTYRAC	2 cut(s)	148, 277
HinfI	GANTC	3 cut(s)	70, 285, 316
HpaII	CCGG	2 cut(s)	202, 280
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	5 cut(s)	148, 277, 315, 352, 502
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	383, 508
Hpy8I	GTNNAC	5 cut(s)	148, 277, 315, 352, 502
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	3 cut(s)	406, 421, 538
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	6 cut(s)	8, 52, 223, 230, 444, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 134
HpyF3I	CTNAG	2 cut(s)	27, 269
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	125, 146, 223, 517, 530
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	3 cut(s)	61, 239, 255
MaeI	CTAG	2 cut(s)	336, 548
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	400
MboII	GAAGA	4 cut(s)	203, 315, 407, 533
MluCI	AATT	5 cut(s)	252, 357, 459, 464, 476
MlyI	GAGTC	2 cut(s)	279, 310
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	162, 264, 330, 339
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	3 cut(s)	438, 453, 462
MspI	CCGG	2 cut(s)	202, 280
MspR9I	CCNGG	2 cut(s)	203, 556
MvaI	CCWGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	2 cut(s)	58, 134
NciI	CCSGG	1 cut(s)	203
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	5 cut(s)	125, 146, 223, 517, 530
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	2 cut(s)	125, 146
PciI	ACATGT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	334, 446
PleI	GAGTC	2 cut(s)	279, 310
PpsI	GAGTC	2 cut(s)	279, 310
PscI	ACATGT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	554
PsrI	GAACNNNNNNTAC	2 cut(s)	485, 517
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	3 cut(s)	408, 503, 580
RsaNI	GTAC	3 cut(s)	407, 502, 579
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	438, 453, 462
SatI	GCNGC	2 cut(s)	333, 445
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	2 cut(s)	279, 310
ScrFI	CCNGG	2 cut(s)	203, 556
SetI	ASST	6 cut(s)	173, 297, 357, 432, 501, 557
SfaNI	GCATC	3 cut(s)	61, 239, 255
Sse9I	AATT	5 cut(s)	252, 357, 459, 464, 476
SsiI	CCGC	2 cut(s)	234, 333
SspMI	CTAG	2 cut(s)	336, 548
StyD4I	CCNGG	2 cut(s)	201, 554
TaaI	ACNGT	3 cut(s)	406, 421, 538
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	4 cut(s)	55, 131, 147, 189
TasI	AATT	5 cut(s)	252, 357, 459, 464, 476
TatI	WGTACW	2 cut(s)	501, 578
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	438, 453, 462
Tru9I	TTAA	3 cut(s)	438, 453, 462
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	530, 533
TspGWI	ACGGA	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	2 cut(s)	125, 146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	2 cut(s)	147, 351
XspI	CTAG	2 cut(s)	336, 548
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.