Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002292

Physical Location & Seq

Genomic Coordinates Forward (+)

48284210 .. 48291095

Gene Structure 6886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGATACTAGGCTGCTTGAGGCTTCTCAAACTGGAAATGTCCAGCTTTTGCATCAATTGCTGAGAGACGATCCACAGCTTCTGCATAATGTTTTGCTAGCTTCCGGAGAGAATCCCTTGTATGTTGCTTCCGCTGCTGGTCATGTGGAATTTGTCGAGGTGATTCTAGAGTTGAAACCAGCTTTGGCCAAAGTATTCAACAAGGATGGCTTTAGCCCCATGGATGTGGCATCTGCCAATGGCTATCTGGAGATTGTAAGGGCTCTGCAGAAAGCTTTACCTGAACTCACCCTGGATAAAGGAAAAGATCAGTTGACTCCACTGCATCATGCTGCTAGAAGAGGGAGGGTAGATGTTATCCGAGAAATAGTTTCGGCTTGTCCAGAAAGTGTTGAAGATGTGACAAGACAAGGGGAGACTGCGTTACACCTTGCTGTTAAGAACAGCCAATTTGAAGCAATAAGAGTCCTGTTGGAATTGGTGGTGGAATGGCTAGTTGGCATTGGAACTGCTCCAGGGGGTGTGTTGGAAGTAGACAGTGTAAATCAGAGGGGTCTCACCGCTCTTGATCTGCTACTACTTTTCCCTAGTGAAGCCGGTGATAGGGAAATTGAGGAGATCCTTCGTGATGCTGGAGCTTTGAGAGCACGAGAGAGAGTCCAGTCTAGTTCTGATGTACCTTCATATGCTCAAAACCACAGCCAAATGGCATCAGAGACTCATCAACAGCTGCCAAATAATGTGGCTTCAACAGCACTAGATACAGTCCATTCTAGTTCGGGTCAGAATCATAACCAAATGGCACAACAGGCCCATCAAGAGCAGGTGGCTCTGACAGCAATAGATATAGTCCATCCTAGTTCTGATGTACCTTTACTTAATCAGAATCATAACCAAGTGGCACAACAGACCAATCAAGAGCAGGGGGCTTCAACAGCAATAGATATAGTCCATCCTAGTTCTGATGTGCCTTCACTTAATCAGAATCATAACCAAATGGCACCACAAGCCCATCAAGAGCAGGGTGCTTCGACAGCGATTGATATAGTCCATCCGAGTTCTGATGTGCCTTCACTTAATCAGAATCATAACCAAATGGCACCACAAGCCCATCAAGAGCAGGGTGCTTCGACAGCGATTGATATAGTCCATCCGAGTTCTGATGTGCCTTCACTTAATCAGAATCATAACCAAATAGCACCACAGACCACTCAAGAACAGCCAAATAATGTGGCTTCGACAACAGTAGCTCCAGTCCATCCTGTTTCTGCTCAAATCACTGGCTCTCCTAGTCAGAACCGCACTCAAATTGGATCACAGACTGATGAAGAGGAGCTAGACGGTATGGAGTACTTCAAATTCAAAAAGGGTATAGACCCCGTTGATAATGCACGTACCGCGCTGTTAGTTATAGCTGTATTAGTGGCTACAGCGAGCTATGAAATTGCACTCAACCCTCCAGGCGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

490

Amino Acids

52.78

Weight (kDa)

4.93

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	6 - 90	1e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	102 - 159	2.5e-10	Ankyrin repeats (3 copies)
Ank_4	PF13637	108 - 158	3.2e-07	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51160
fragaria_vesca	FvH4_7g26641 FvH4_7g26643 FvH4_7g26670
malus_domestica	MD01G1175400.v1.1 MD07G1241300.v1.1 MD07G1241500.v1.1 MD12G1230800.v1.1 MD12G1230900.v1.1 MD12G1231100.v1.1 MD12G1231200.v1.1
prunus_persica	Prupe.2G270400_v2.0.a1 Prupe.2G270500_v2.0.a1
pyrus_communis	pycom07g21780 pycom07g21790 pycom07g21800 pycom07g21860 pycom07g21970 pycom12g21410
rosa_chinensis	RchiOBHm_Chr1g0373271 RchiOBHm_Chr1g0373281
rosa_laevigata	RLG00000026830 RLG00000026831 RLG00000026832
rosa_multiflora	Rmu_co8287043.1_g000001 Rmu_sc0000170.1_g000005 Rmu_ssc0000435.1_g000001 Rmu_ssc0000435.1_g000002
rosa_rugosa	Rorug01G0376800 Rorug01G0376800
rosa_samantha	Rh1AG385600 Rh1AG385700 Rh1BG349800 Rh1BG349900 Rh1CG363000 Rh1CG363100 Rh1DG380500 Rh1DG380600 Rh1DG380700 Rh7DG228200
rosa_wichuraiana	Rw1G034920 Rw1G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	814
Acc36I	ACCTGC	1 cut(s)	814
AccB1I	GGYRCC	2 cut(s)	1000, 1099
AccBSI	CCGCTC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	1400
AccIII	TCCGGA	1 cut(s)	104
AciI	CCGC	5 cut(s)	132, 561, 1300, 1398, 1464
AclWI	GGATC	3 cut(s)	65, 613, 1321
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	149, 1358
AfaI	GTAC	4 cut(s)	678, 870, 1352, 1396
AfiI	CCNNNNNNNGG	2 cut(s)	603, 1463
AgsI	TTSAA	8 cut(s)	175, 199, 395, 455, 750, 933, 1357, 1363
AjnI	CCWGG	3 cut(s)	291, 514, 1459
AjuI	GAANNNNNNNTTGG	4 cut(s)	167, 199, 480, 512
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	4 cut(s)	60, 410, 560, 710
AlwI	GGATC	3 cut(s)	65, 613, 1321
AlwNI	CAGNNNCTG	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	2 cut(s)	186, 810
ApeKI	GCWGC	4 cut(s)	13, 134, 332, 730
ApoI	RAATTY	2 cut(s)	149, 1358
AspLEI	GCGC	1 cut(s)	1402
AspS9I	GGNCC	1 cut(s)	811
AsuHPI	GGTGA	4 cut(s)	172, 280, 550, 611
AsuNHI	GCTAGC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	1000, 1099
BanII	GRGCYC	1 cut(s)	265
BauI	CACGAG	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	3 cut(s)	121, 319, 717
BccI	CCATC	9 cut(s)	200, 822, 861, 960, 1020, 1059, 1119, 1158, 1266
BciT130I	CCWGG	3 cut(s)	293, 516, 1461
BcoDI	GTCTC	4 cut(s)	60, 410, 560, 710
BfmI	CTRYAG	2 cut(s)	266, 1428
BfuAI	ACCTGC	1 cut(s)	814
BisI	GCNGC	4 cut(s)	14, 135, 333, 731
BlsI	GCNGC	4 cut(s)	15, 136, 334, 732
BmcAI	AGTACT	1 cut(s)	1352
Bme1390I	CCNGG	3 cut(s)	293, 516, 1461
BmgT120I	GGNCC	1 cut(s)	811
BmiI	GGNNCC	2 cut(s)	1002, 1101
BmrFI	CCNGG	3 cut(s)	293, 516, 1461
BmsI	GCATC	5 cut(s)	61, 239, 334, 619, 719
BmtI	GCTAGC	1 cut(s)	101
BpmI	CTGGAG	5 cut(s)	269, 498, 654, 1236, 1443
BpuEI	CTTGAG	2 cut(s)	38, 1197
BsaAI	YACGTR	1 cut(s)	1394
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	3 cut(s)	219, 291, 515
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	6 cut(s)	407, 437, 1234, 1264, 1270, 1300
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 1463
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	4 cut(s)	37, 661, 1253, 1285
BseAI	TCCGGA	1 cut(s)	104
BseBI	CCWGG	3 cut(s)	293, 516, 1461
BseDI	CCNNGG	3 cut(s)	219, 291, 515
BseGI	GGATG	7 cut(s)	211, 229, 853, 952, 1051, 1150, 1258
BseLI	CCNNNNNNNGG	2 cut(s)	603, 1463
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	4 cut(s)	37, 661, 1253, 1285
BseRI	GAGGAG	2 cut(s)	629, 1346
BseXI	GCAGC	3 cut(s)	121, 319, 717
Bsh1236I	CGCG	1 cut(s)	1400
BshFI	GGCC	2 cut(s)	188, 812
BshNI	GGYRCC	2 cut(s)	1000, 1099
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	2 cut(s)	105, 597
BslI	CCNNNNNNNGG	2 cut(s)	603, 1463
BsmAI	GTCTC	4 cut(s)	60, 410, 560, 710
BsmBI	CGTCTC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	188, 812
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	265, 649
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	5 cut(s)	70, 307, 568, 618, 1313
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	5 cut(s)	132, 561, 1300, 1398, 1464
BspANI	GGCC	2 cut(s)	188, 812
BspCNI	CTCAG	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	1400
BspLI	GGNNCC	2 cut(s)	1002, 1101
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	814
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	3 cut(s)	65, 613, 1321
BspT107I	GGYRCC	2 cut(s)	1000, 1099
BspTNI	GGTCTC	1 cut(s)	560
BsrBI	CCGCTC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	4 cut(s)	37, 661, 1253, 1285
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	3 cut(s)	219, 291, 515
BssMI	GATC	5 cut(s)	70, 307, 568, 618, 1313
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	3 cut(s)	293, 516, 1461
Bst4CI	ACNGT	4 cut(s)	539, 766, 1246, 1343
Bst6I	CTCTTC	2 cut(s)	334, 1323
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	1394
BstC8I	GCNNGC	2 cut(s)	99, 1435
BstDEI	CTNAG	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	7 cut(s)	211, 229, 853, 952, 1051, 1150, 1258
BstFNI	CGCG	1 cut(s)	1400
BstHHI	GCGC	1 cut(s)	1402
BstKTI	GATC	5 cut(s)	73, 310, 571, 621, 1316
BstMAI	GTCTC	4 cut(s)	60, 410, 560, 710
BstMBI	GATC	5 cut(s)	70, 307, 568, 618, 1313
BstNI	CCWGG	3 cut(s)	293, 516, 1461
BstSCI	CCNGG	3 cut(s)	291, 514, 1459
BstSFI	CTRYAG	2 cut(s)	266, 1428
BstUI	CGCG	1 cut(s)	1400
BstV1I	GCAGC	3 cut(s)	121, 319, 717
BstX2I	RGATCY	1 cut(s)	618
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	188, 812
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	7 cut(s)	211, 229, 853, 952, 1051, 1150, 1258
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	3 cut(s)	320, 544, 1278
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	2 cut(s)	99, 1435
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	1402
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	811
Csp6I	GTAC	4 cut(s)	677, 869, 1351, 1395
CspCI	CAANNNNNGTGG	4 cut(s)	723, 758, 1212, 1247
CviAII	CATG	3 cut(s)	143, 220, 329
CviQI	GTAC	4 cut(s)	677, 869, 1351, 1395
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	5 cut(s)	72, 309, 570, 620, 1315
DpnII	GATC	5 cut(s)	70, 307, 568, 618, 1313
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	334, 1323
EarI	CTCTTC	2 cut(s)	334, 1323
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	560
EcoRII	CCWGG	3 cut(s)	291, 514, 1459
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	3 cut(s)	146, 223, 332
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	3 cut(s)	142, 219, 328
FauNDI	CATATG	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	14, 135, 333, 731
FokI	GGATG	7 cut(s)	218, 236, 840, 939, 1038, 1137, 1245
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	4 cut(s)	14, 135, 333, 731
GlaI	GCGC	1 cut(s)	1401
GluI	GCNGC	4 cut(s)	14, 135, 333, 731
GsuI	CTGGAG	5 cut(s)	269, 498, 654, 1236, 1443
HaeIII	GGCC	2 cut(s)	188, 812
HapII	CCGG	2 cut(s)	105, 597
HhaI	GCGC	1 cut(s)	1402
Hin1II	CATG	3 cut(s)	146, 223, 332
Hin6I	GCGC	1 cut(s)	1400
HinP1I	GCGC	1 cut(s)	1400
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	273
HpaII	CCGG	2 cut(s)	105, 597
HphI	GGTGA	4 cut(s)	172, 280, 550, 611
Hpy166II	GTNNAC	2 cut(s)	315, 535
Hpy8I	GTNNAC	2 cut(s)	315, 535
HpyAV	CCTTC	5 cut(s)	632, 690, 981, 1080, 1179
HpyCH4III	ACNGT	4 cut(s)	539, 766, 1246, 1343
HpyCH4IV	ACGT	1 cut(s)	1393
HpyCH4V	TGCA	6 cut(s)	52, 85, 268, 325, 1391, 1448
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	1393
Hsp92II	CATG	3 cut(s)	146, 223, 332
HspAI	GCGC	1 cut(s)	1400
Kpn2I	TCCGGA	1 cut(s)	104
Kzo9I	GATC	5 cut(s)	70, 307, 568, 618, 1313
LmnI	GCTCC	4 cut(s)	517, 635, 1255, 1333
Lsp1109I	GCAGC	3 cut(s)	121, 319, 717
LweI	GCATC	5 cut(s)	61, 239, 334, 619, 719
MaeII	ACGT	1 cut(s)	1393
MaeIII	GTNAC	2 cut(s)	400, 423
MalI	GATC	5 cut(s)	72, 309, 570, 620, 1315
MbiI	CCGCTC	1 cut(s)	563
MboI	GATC	5 cut(s)	70, 307, 568, 618, 1313
MboII	GAAGA	3 cut(s)	351, 407, 1340
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	2 cut(s)	265, 649
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	8 cut(s)	56, 149, 449, 476, 609, 1308, 1358, 1443
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	4 cut(s)	310, 474, 666, 712
MmeI	TCCRAC	2 cut(s)	453, 507
MnlI	CCTC	8 cut(s)	13, 151, 335, 339, 543, 607, 1324, 1467
Mox20I	TGGCCA	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	5 cut(s)	438, 879, 978, 1077, 1176
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	2 cut(s)	134, 730
MspI	CCGG	2 cut(s)	105, 597
MspR9I	CCNGG	3 cut(s)	293, 516, 1461
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	3 cut(s)	293, 516, 1461
MvnI	CGCG	1 cut(s)	1400
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	5 cut(s)	70, 307, 568, 618, 1313
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	146, 223, 332
NlaIV	GGNNCC	2 cut(s)	1002, 1101
NmuCI	GTSAC	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	814
PfeI	GAWTC	7 cut(s)	112, 163, 787, 886, 985, 1084, 1183
PkrI	GCNGC	4 cut(s)	15, 136, 334, 732
PleI	GAGTC	4 cut(s)	310, 473, 665, 712
PpsI	GAGTC	4 cut(s)	310, 473, 665, 712
Ppu21I	YACGTR	1 cut(s)	1394
Psp6I	CCWGG	3 cut(s)	291, 514, 1459
PspGI	CCWGG	3 cut(s)	291, 514, 1459
PspN4I	GGNNCC	2 cut(s)	1002, 1101
PspPI	GGNCC	1 cut(s)	811
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	618
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	4 cut(s)	678, 870, 1352, 1396
RsaNI	GTAC	4 cut(s)	677, 869, 1351, 1395
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	5 cut(s)	438, 879, 978, 1077, 1176
SatI	GCNGC	4 cut(s)	14, 135, 333, 731
Sau3AI	GATC	5 cut(s)	70, 307, 568, 618, 1313
Sau96I	GGNCC	1 cut(s)	811
ScaI	AGTACT	1 cut(s)	1352
SchI	GAGTC	4 cut(s)	310, 474, 666, 712
ScrFI	CCNGG	3 cut(s)	293, 516, 1461
SduI	GDGCHC	2 cut(s)	265, 649
SfaNI	GCATC	5 cut(s)	61, 239, 334, 619, 719
SfcI	CTRYAG	2 cut(s)	266, 1428
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	17, 1212
SmoI	CTYRAG	2 cut(s)	17, 1212
Sse9I	AATT	8 cut(s)	56, 149, 449, 476, 609, 1308, 1358, 1443
SsiI	CCGC	5 cut(s)	132, 561, 1300, 1398, 1464
StyD4I	CCNGG	3 cut(s)	291, 514, 1459
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	4 cut(s)	539, 766, 1246, 1343
TaiI	ACGT	1 cut(s)	1396
TaqI	TCGA	4 cut(s)	156, 1031, 1130, 1238
TasI	AATT	8 cut(s)	56, 149, 449, 476, 609, 1308, 1358, 1443
TatI	WGTACW	1 cut(s)	1350
TfiI	GAWTC	7 cut(s)	112, 163, 787, 886, 985, 1084, 1183
Tru1I	TTAA	5 cut(s)	438, 879, 978, 1077, 1176
Tru9I	TTAA	5 cut(s)	438, 879, 978, 1077, 1176
TscAI	CASTG	3 cut(s)	327, 544, 1285
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	4 cut(s)	13, 134, 332, 730
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	672, 1341, 1455
TspRI	CASTG	3 cut(s)	327, 544, 1285
XapI	RAATTY	2 cut(s)	149, 1358
XbaI	TCTAGA	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	1352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.