Rh7DG228200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002292
Physical Location & Seq
Forward (+)
22474112 .. 22474396
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG228200.1

Sequence Viewer

Length: 285 bp
ATGCTACCTTACCCAGCCGACCCTATCGCAGGCCAAGCCCGAGATAGTGGGGTGCTTGGTGTCGTCGACAGAGCCCTGCCGCTGTTCCGCAAATCGTCCAGTCTAAATCGGACGACGTGGTTTGTCGGAGGAAGAGAGAGAGGGCTTCCTGTTGGATTCGCTGGTTCTCGGATCGTGCACCTTCAAATCGTTGCTGGTTCTCAAATTGTGCACCTTCAGATCGTTCGTTGGTTCTCGGATTGTGCACCTTCAGATCGTCGCTGGCTCGATCGTACCTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.4

Weight (kDa)

11.07

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 80, 88
AclWI GGATC 1 cut(s) 179
AcuI CTGAAG 2 cut(s) 200, 234
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 185
AjiI CACGTC 1 cut(s) 117
Alw21I GWGCWC 3 cut(s) 180, 213, 247
Alw44I GTGCAC 3 cut(s) 176, 209, 243
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 31
ApaLI GTGCAC 3 cut(s) 176, 209, 243
AvaI CYCGRG 1 cut(s) 39
BaeGI GKGCMC 3 cut(s) 180, 213, 247
BanII GRGCYC 1 cut(s) 76
Bbv12I GWGCWC 3 cut(s) 180, 213, 247
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 39
BmgBI CACGTC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 3 cut(s) 180, 213, 247
BseYI CCCAGC 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 3 cut(s) 180, 213, 247
BsiHKCI CYCGRG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 4 cut(s) 76, 180, 213, 247
Bsp143I GATC 4 cut(s) 171, 219, 253, 268
BspACI CCGC 2 cut(s) 80, 88
BspANI GGCC 1 cut(s) 33
BspPI GGATC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 99
BssMI GATC 4 cut(s) 171, 219, 253, 268
Bst6I CTCTTC 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 31, 263
BstENI CCTNNNNNAGG 1 cut(s) 27
BstKTI GATC 4 cut(s) 174, 222, 256, 271
BstMBI GATC 4 cut(s) 171, 219, 253, 268
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSLI GKGCMC 3 cut(s) 180, 213, 247
BsuRI GGCC 1 cut(s) 33
BtrI CACGTC 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 31, 263
Csp6I GTAC 1 cut(s) 273
CviJI RGCY 6 cut(s) 17, 33, 38, 74, 145, 265
CviKI_1 RGCY 6 cut(s) 17, 33, 38, 74, 145, 265
CviQI GTAC 1 cut(s) 273
DpnI GATC 4 cut(s) 173, 221, 255, 270
DpnII GATC 4 cut(s) 171, 219, 253, 268
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 200, 234
Eco88I CYCGRG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 156
Hpy166II GTNNAC 4 cut(s) 67, 178, 211, 245
Hpy188I TCNGA 6 cut(s) 111, 128, 171, 219, 238, 253
Hpy8I GTNNAC 4 cut(s) 67, 178, 211, 245
Hpy99I CGWCG 3 cut(s) 68, 118, 261
HpyAV CCTTC 3 cut(s) 191, 224, 258
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 178, 211, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 116
Kzo9I GATC 4 cut(s) 171, 219, 253, 268
LpnPI CCDG 8 cut(s) 15, 27, 89, 112, 147, 162, 180, 247
MaeII ACGT 1 cut(s) 116
MalI GATC 4 cut(s) 173, 221, 255, 270
MboI GATC 4 cut(s) 171, 219, 253, 268
MboII GAAGA 1 cut(s) 144
MhlI GDGCHC 4 cut(s) 76, 180, 213, 247
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 2 cut(s) 106, 133
MnlI CCTC 2 cut(s) 122, 134
MseI TTAA 1 cut(s) 283
MspA1I CMGCKG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 4 cut(s) 171, 219, 253, 268
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 81
Ple19I CGATCG 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 13
PvuI CGATCG 1 cut(s) 271
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 4 cut(s) 171, 219, 253, 268
SduI GDGCHC 4 cut(s) 76, 180, 213, 247
SetI ASST 6 cut(s) 10, 119, 183, 216, 250, 278
Sse9I AATT 1 cut(s) 204
SsiI CCGC 2 cut(s) 80, 88
TaiI ACGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 66, 267
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
VneI GTGCAC 3 cut(s) 176, 209, 243
XagI CCTNNNNNAGG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.