Rw1G034920

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
62773870 .. 62775770
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034920.1

Sequence Viewer

Length: 1368 bp
ATGGAGCAAAGGCTGTTTGAGGCTTCTCAAAGTGGAAATATCCAACTTCTGCACCAGTTGCTTGCAGAGAATCCACTCCTACTCCATAGTCTTGCTCTAGATTCTGCAGAGAACCCGGTACATGTTGCTTCACTTGCTGACCATGTTGGCTTTGTTAAGGAGATTCTAAGGTTGAAACCGGCTTTGGCCAAAGAAATGAACCCAGATGGCTTTAGCCCTATGCATATAGCATCTGCCAACGGATATTTGGAGATTGTAGGGGAGCTTCTGAAAGTTGATCAAAGACTCTGCCGGCTAAAGGGAAGAGATCAATGGACTCCTCTTCATCATGCTGCCAGGAGAGGAAGGGTAGATATTGTTAGAGAAATAGTCTTGGCTTGTCCAGAAAGTGTTGAAGATGTGACAGTACAAGGGGAAACTGCTTTGCACCTTGCTGTTAAGAACAGTCAGTTTGGAGCTGTTGAAGTTTTGGTGAAATCGGTCACAGAAATCAGGAAGATGAACATCCTGGATTTGAAGGATAAGCATGGCAATACAGTTCTTCACCTAGCAACATGGAGAAAACAACACCAGGTGGTGGAATGGTTAATTGGAATTGGGGATAGTACCCCAGGCGCAATGGAAGTGAACAACGTAAACCAGAGTGGTCTCACTGCTCTTGATCTTCTACTACTTTTCCCAAGTGAAGCTGGTGATCGAGAAATCTACGACACCCTTAGTGGTGCTGGAGCTTTGAGAGCACAAGACATGGTCCATTCTGCTATACCTTCATTTGACTCTGATAACCAAACCTTCTTGAACTGCCCCGTGGCATCAGGGACACATCAGTTGCAGCATCCAAATGATTTCATCCAATACTTCAAGTTCAAAAAGGGCAGAGATTCTCCTAGTGATGCGCGCACCGCGCTGTTAGTTGTAGCCGTATTGGTGACTACAGCGACATTTCAAGTGGGACTAAGCCCTCCAACCGGTGTTTGGCAGGACACCGAGCTGAAAAATAATGGGACTAGCAGTGAACCAACACACAATGCAGGAACGTCTATATTGGGGTCTTATAACGCAGCTGCATTTGTGGTTTTCGTGGCTTTCAACTCCATTGGTTTTTCGGTTTCTCTTTACATGATCAACATCCTCACAAGCAATTTCCCTTTGCAGTTGGAGCTTCAGATCTGTATCATTGCCATGTATTGTACATACAACACAGCGATGATTAGCATTGCACCGAATAACACAAGAGTCTTCATTATTGTATTTACTTCGGTTTTGCCTACTGCGGTATCACTTGCTGCCAAATCAGTTAGGCAACTTGTTATGAGGCTTGGAGAACCTCTGGTAAATTCAGCGCGGAGATTCATTCATTCGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

49.83

Weight (kDa)

6.24

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 5 - 91 6.4e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 100 - 163 3.3e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 134 - 197 5e-09 Ankyrin repeats (3 copies)
PGG PF13962 298 - 403 1.4e-16 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1056
AccB7I CCANNNNNTGG 1 cut(s) 577
AccII CGCG 3 cut(s) 898, 905, 1345
AciI CCGC 3 cut(s) 903, 1274, 1345
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 1336
AcuI CTGAAG 1 cut(s) 1148
AdeI CACNNNGTG 1 cut(s) 574
AfaI GTAC 4 cut(s) 120, 408, 607, 1192
AfiI CCNNNNNNNGG 4 cut(s) 298, 577, 968, 975
AflIII ACRYGT 1 cut(s) 121
AgeI ACCGGT 1 cut(s) 968
AgsI TTSAA 9 cut(s) 175, 395, 464, 517, 799, 862, 868, 947, 1090
AjnI CCWGG 4 cut(s) 335, 507, 570, 610
AjuI GAANNNNNNNTTGG 4 cut(s) 167, 199, 573, 605
AluBI AGCT 7 cut(s) 265, 458, 689, 731, 991, 1064, 1162
AluI AGCT 7 cut(s) 265, 458, 689, 731, 991, 1064, 1162
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 1 cut(s) 653
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 5 cut(s) 332, 832, 1061, 1064, 1286
ApoI RAATTY 1 cut(s) 1336
AsiGI ACCGGT 1 cut(s) 968
AspLEI GCGC 5 cut(s) 617, 898, 900, 907, 1345
AspS9I GGNCC 1 cut(s) 751
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 484, 536, 704, 940
AsuII TTCGAA 1 cut(s) 1361
AvaII GGWCC 1 cut(s) 751
BaeI ACNNNNGTAYC 2 cut(s) 1260, 1293
BalI TGGCCA 1 cut(s) 188
BarI GAAGNNNNNNTAC 2 cut(s) 249, 281
BbsI GAAGAC 1 cut(s) 1231
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 5 cut(s) 319, 844, 1051, 1073, 1273
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 905
BciT130I CCWGG 4 cut(s) 337, 509, 572, 612
BclI TGATCA 2 cut(s) 277, 1122
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 5 cut(s) 98, 548, 888, 1008, 1366
BfmI CTRYAG 2 cut(s) 105, 933
BglII AGATCT 1 cut(s) 1167
BisI GCNGC 5 cut(s) 333, 833, 1062, 1065, 1287
BlsI GCNGC 5 cut(s) 334, 834, 1063, 1066, 1288
Bme1390I CCNGG 5 cut(s) 116, 337, 509, 572, 612
Bme18I GGWCC 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 751
BmrFI CCNGG 5 cut(s) 116, 337, 509, 572, 612
BmsI GCATC 4 cut(s) 239, 821, 844, 883
BpiI GAAGAC 1 cut(s) 1231
BpmI CTGGAG 1 cut(s) 747
Bpu14I TTCGAA 1 cut(s) 1361
BpuMI CCSGG 1 cut(s) 116
BsaBI GATNNNNATC 3 cut(s) 503, 1127, 1172
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 2 cut(s) 610, 807
BsaWI WCCGGW 1 cut(s) 968
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 577, 968, 975
Bse118I RCCGGY 3 cut(s) 178, 291, 968
Bse1I ACTGG 1 cut(s) 55
Bse3DI GCAATG 3 cut(s) 624, 1176, 1215
Bse8I GATNNNNATC 3 cut(s) 503, 1127, 1172
BseBI CCWGG 4 cut(s) 337, 509, 572, 612
BseDI CCNNGG 2 cut(s) 610, 807
BseGI GGATG 4 cut(s) 504, 835, 849, 1128
BseJI GATNNNNATC 3 cut(s) 503, 1127, 1172
BseLI CCNNNNNNNGG 4 cut(s) 298, 577, 968, 975
BseMI GCAATG 3 cut(s) 624, 1176, 1215
BseNI ACTGG 1 cut(s) 55
BsePI GCGCGC 1 cut(s) 896
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 5 cut(s) 319, 844, 1051, 1073, 1273
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 3 cut(s) 898, 905, 1345
BshFI GGCC 1 cut(s) 188
BshTI ACCGGT 1 cut(s) 968
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 4 cut(s) 116, 179, 292, 969
BslFI GGGAC 3 cut(s) 832, 966, 1018
BslI CCNNNNNNNGG 4 cut(s) 298, 577, 968, 975
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 3 cut(s) 832, 966, 1018
BsnI GGCC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 653
Bsp119I TTCGAA 1 cut(s) 1361
Bsp1286I GDGCHC 1 cut(s) 742
Bsp1407I TGTACA 1 cut(s) 1190
Bsp143I GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
BspACI CCGC 3 cut(s) 903, 1274, 1345
BspANI GGCC 1 cut(s) 188
BspFNI CGCG 3 cut(s) 898, 905, 1345
BspMAI CTGCAG 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 1361
BspTNI GGTCTC 1 cut(s) 653
BsrDI GCAATG 3 cut(s) 624, 1176, 1215
BsrFI RCCGGY 3 cut(s) 178, 291, 968
BsrGI TGTACA 1 cut(s) 1190
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 3 cut(s) 178, 291, 968
BssECI CCNNGG 2 cut(s) 610, 807
BssHII GCGCGC 1 cut(s) 896
BssMI GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
Bst2UI CCWGG 4 cut(s) 337, 509, 572, 612
Bst4CI ACNGT 3 cut(s) 406, 446, 538
Bst6I CTCTTC 2 cut(s) 298, 327
BstAPI GCANNNNNTGC 1 cut(s) 58
BstAUI TGTACA 1 cut(s) 1190
BstBI TTCGAA 1 cut(s) 1361
BstC8I GCNNGC 3 cut(s) 63, 293, 898
BstDEI CTNAG 3 cut(s) 167, 716, 956
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 4 cut(s) 504, 835, 849, 1128
BstFNI CGCG 3 cut(s) 898, 905, 1345
BstHHI GCGC 5 cut(s) 617, 898, 900, 907, 1345
BstKTI GATC 6 cut(s) 280, 310, 664, 697, 1125, 1170
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
BstMWI GCNNNNNNNGC 6 cut(s) 58, 134, 737, 902, 904, 1159
BstNI CCWGG 4 cut(s) 337, 509, 572, 612
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 5 cut(s) 114, 335, 507, 570, 610
BstSFI CTRYAG 2 cut(s) 105, 933
BstUI CGCG 3 cut(s) 898, 905, 1345
BstV1I GCAGC 5 cut(s) 319, 844, 1051, 1073, 1273
BstV2I GAAGAC 1 cut(s) 1231
BstX2I RGATCY 1 cut(s) 1167
BstYI RGATCY 1 cut(s) 1167
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 807
BtgZI GCGATG 1 cut(s) 1220
BtsCI GGATG 4 cut(s) 504, 835, 849, 1128
BtsI GCAGTG 2 cut(s) 651, 1018
BtsIMutI CAGTG 2 cut(s) 651, 1018
Cac8I GCNNGC 3 cut(s) 63, 293, 898
CfoI GCGC 5 cut(s) 617, 898, 900, 907, 1345
Cfr10I RCCGGY 3 cut(s) 178, 291, 968
Cfr13I GGNCC 1 cut(s) 751
CsiI ACCWGGT 1 cut(s) 570
Csp6I GTAC 4 cut(s) 119, 407, 606, 1191
CspAI ACCGGT 1 cut(s) 968
CviAII CATG 8 cut(s) 122, 143, 329, 527, 555, 748, 1120, 1183
CviQI GTAC 4 cut(s) 119, 407, 606, 1191
DdeI CTNAG 3 cut(s) 167, 716, 956
DpnI GATC 6 cut(s) 279, 309, 663, 696, 1124, 1169
DpnII GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
DraIII CACNNNGTG 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 298, 327
EarI CTCTTC 2 cut(s) 298, 327
Eco31I GGTCTC 1 cut(s) 653
Eco47I GGWCC 1 cut(s) 751
Eco57I CTGAAG 1 cut(s) 1148
EcoRII CCWGG 4 cut(s) 335, 507, 570, 610
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 8 cut(s) 125, 146, 332, 530, 558, 751, 1123, 1186
FaqI GGGAC 3 cut(s) 832, 966, 1018
FatI CATG 8 cut(s) 121, 142, 328, 526, 554, 747, 1119, 1182
FbaI TGATCA 2 cut(s) 277, 1122
Fnu4HI GCNGC 5 cut(s) 333, 833, 1062, 1065, 1287
FokI GGATG 4 cut(s) 491, 822, 836, 1115
Fsp4HI GCNGC 5 cut(s) 333, 833, 1062, 1065, 1287
FspBI CTAG 5 cut(s) 98, 548, 888, 1008, 1366
GlaI GCGC 5 cut(s) 616, 897, 899, 906, 1344
GluI GCNGC 5 cut(s) 333, 833, 1062, 1065, 1287
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 1 cut(s) 188
HapII CCGG 4 cut(s) 116, 179, 292, 969
HhaI GCGC 5 cut(s) 617, 898, 900, 907, 1345
Hin1II CATG 8 cut(s) 125, 146, 332, 530, 558, 751, 1123, 1186
Hin6I GCGC 5 cut(s) 615, 896, 898, 905, 1343
HinP1I GCGC 5 cut(s) 615, 896, 898, 905, 1343
HinfI GANTC 9 cut(s) 70, 101, 163, 285, 316, 776, 881, 1236, 1350
HpaII CCGG 4 cut(s) 116, 179, 292, 969
HphI GGTGA 4 cut(s) 484, 536, 704, 940
Hpy166II GTNNAC 3 cut(s) 628, 637, 1016
Hpy188I TCNGA 3 cut(s) 270, 781, 1167
Hpy188III TCNNGA 6 cut(s) 98, 383, 493, 659, 698, 796
Hpy8I GTNNAC 3 cut(s) 628, 637, 1016
HpyAV CCTTC 4 cut(s) 339, 511, 777, 802
HpyCH4III ACNGT 3 cut(s) 406, 446, 538
HpyCH4IV ACGT 2 cut(s) 633, 1037
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 134, 737, 902, 904, 1159
HpyF3I CTNAG 3 cut(s) 167, 716, 956
HpySE526I ACGT 2 cut(s) 633, 1037
Hsp92II CATG 8 cut(s) 125, 146, 332, 530, 558, 751, 1123, 1186
HspAI GCGC 5 cut(s) 615, 896, 898, 905, 1343
KroI GCCGGC 1 cut(s) 291
KroNI GCCGGC 1 cut(s) 293
Ksp22I TGATCA 2 cut(s) 277, 1122
Kzo9I GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
LmnI GCTCC 5 cut(s) 4, 262, 455, 728, 1159
Lsp1109I GCAGC 5 cut(s) 319, 844, 1051, 1073, 1273
LweI GCATC 4 cut(s) 239, 821, 844, 883
MabI ACCWGGT 1 cut(s) 570
MaeI CTAG 5 cut(s) 98, 548, 888, 1008, 1366
MaeII ACGT 2 cut(s) 633, 1037
MaeIII GTNAC 3 cut(s) 400, 481, 928
MalI GATC 6 cut(s) 279, 309, 663, 696, 1124, 1169
MboI GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
MboII GAAGA 7 cut(s) 314, 315, 407, 508, 533, 656, 1231
MflI RGATCY 1 cut(s) 1167
MhlI GDGCHC 1 cut(s) 742
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 4 cut(s) 588, 594, 1141, 1336
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 4 cut(s) 279, 310, 770, 1245
MmeI TCCRAC 3 cut(s) 67, 989, 1137
MnlI CCTC 7 cut(s) 13, 330, 335, 972, 1142, 1308, 1338
Mox20I TGGCCA 1 cut(s) 188
Mph1103I ATGCAT 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 291
MscI TGGCCA 1 cut(s) 188
MseI TTAA 3 cut(s) 156, 438, 587
MslI CAYNNNNRTG 3 cut(s) 840, 1181, 1205
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 1064
MspI CCGG 4 cut(s) 116, 179, 292, 969
MspR9I CCNGG 5 cut(s) 116, 337, 509, 572, 612
MvaI CCWGG 4 cut(s) 337, 509, 572, 612
MvnI CGCG 3 cut(s) 898, 905, 1345
MwoI GCNNNNNNNGC 6 cut(s) 58, 134, 737, 902, 904, 1159
NaeI GCCGGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 116
NdeII GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
NgoMIV GCCGGC 1 cut(s) 291
NlaIII CATG 8 cut(s) 125, 146, 332, 530, 558, 751, 1123, 1186
NmuCI GTSAC 3 cut(s) 400, 481, 928
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 125
NspV TTCGAA 1 cut(s) 1361
PauI GCGCGC 1 cut(s) 896
PciI ACATGT 1 cut(s) 121
PdiI GCCGGC 1 cut(s) 293
PfeI GAWTC 5 cut(s) 70, 101, 163, 881, 1350
PflFI GACNNNGTC 1 cut(s) 749
PflMI CCANNNNNTGG 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 507
PinAI ACCGGT 1 cut(s) 968
PkrI GCNGC 5 cut(s) 334, 834, 1063, 1066, 1288
PleI GAGTC 4 cut(s) 279, 310, 770, 1244
PpsI GAGTC 4 cut(s) 279, 310, 770, 1244
PscI ACATGT 1 cut(s) 121
PsiI TTATAA 1 cut(s) 1056
Psp6I CCWGG 4 cut(s) 335, 507, 570, 610
PspGI CCWGG 4 cut(s) 335, 507, 570, 610
PspPI GGNCC 1 cut(s) 751
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 1167
PsyI GACNNNGTC 1 cut(s) 749
PteI GCGCGC 1 cut(s) 896
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 4 cut(s) 120, 408, 607, 1192
RsaNI GTAC 4 cut(s) 119, 407, 606, 1191
RseI CAYNNNNRTG 3 cut(s) 840, 1181, 1205
SaqAI TTAA 3 cut(s) 156, 438, 587
SatI GCNGC 5 cut(s) 333, 833, 1062, 1065, 1287
Sau3AI GATC 6 cut(s) 277, 307, 661, 694, 1122, 1167
Sau96I GGNCC 1 cut(s) 751
SchI GAGTC 4 cut(s) 279, 310, 770, 1245
ScrFI CCNGG 5 cut(s) 116, 337, 509, 572, 612
SduI GDGCHC 1 cut(s) 742
SexAI ACCWGGT 1 cut(s) 570
SfaNI GCATC 4 cut(s) 239, 821, 844, 883
SfcI CTRYAG 2 cut(s) 105, 933
SfuI TTCGAA 1 cut(s) 1361
SinI GGWCC 1 cut(s) 751
SmiMI CAYNNNNRTG 3 cut(s) 840, 1181, 1205
Sse9I AATT 4 cut(s) 588, 594, 1141, 1336
SsiI CCGC 3 cut(s) 903, 1274, 1345
SspMI CTAG 5 cut(s) 98, 548, 888, 1008, 1366
StyD4I CCNGG 5 cut(s) 114, 335, 507, 570, 610
TaaI ACNGT 3 cut(s) 406, 446, 538
TaiI ACGT 2 cut(s) 636, 1040
TaqI TCGA 2 cut(s) 697, 1361
TaqII GACCGA 1 cut(s) 469
TasI AATT 4 cut(s) 588, 594, 1141, 1336
TatI WGTACW 2 cut(s) 406, 1190
TfiI GAWTC 5 cut(s) 70, 101, 163, 881, 1350
Tru1I TTAA 3 cut(s) 156, 438, 587
Tru9I TTAA 3 cut(s) 156, 438, 587
TscAI CASTG 2 cut(s) 658, 1018
TseFI GTSAC 3 cut(s) 400, 481, 928
TseI GCWGC 5 cut(s) 332, 832, 1061, 1064, 1286
Tsp45I GTSAC 3 cut(s) 400, 481, 928
TspDTI ATGAA 8 cut(s) 212, 314, 515, 759, 838, 1231, 1342, 1346
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 2 cut(s) 658, 1018
Tth111I GACNNNGTC 1 cut(s) 749
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 751
XapI RAATTY 1 cut(s) 1336
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 972
XspI CTAG 5 cut(s) 98, 548, 888, 1008, 1366
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.