FvH4_7g26643

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002292
Physical Location & Seq
Forward (+)
20082235 .. 20084170
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26643.t1

Sequence Viewer

Length: 1380 bp
ATGGATCAAAGGCTGTTTGAGGCTTCTCAAAGTGGAAATATCCAACTTCTGCACCAGTTGCTTGCAGAGAATCCACTCCTACTCCATAGTCTTGCTCTAGATTCTGCAGTGAACCCCTTACACGTTGCTTCGCTTGCTGGCCATGTTGGCTTTGCTAAGGAGATTCTAAGGTTGAAACCAGCTTTGGCCAAAGAAATGAACCAGGATGGCTTTAGCCCTATGCATATCACATCTGCCAACGGATGTTTGGAGATTGTAGGGGAGCTTCTGAAAGTTGATCCAAGACTATGCCGGCTTAAGGGAAGAGATCAATGGACTCCTCTTCATCATGCTGCAAGGAGAGGTAGGGAAGATATTGTTAGAGAAATAGTATTGGCTTGTCCAGAAAGTGTTGAAGATGTGACAGTACAAGGGGAAACTGCTTTGCACCTTGCTGTTAAGAACAGTCAGTTTGCAGCTGTTGAAGTTTTGGTGGAATTGGTCACAAAAATGAGGAAGGTGAACATCCTGAACGTGAAGGATAATCATGGCAATACAGTTCTTCACCTAGCAACATGGAGAAAACAACACCAGGTGGTGGAATGGTTGATTGGAATTGGAACTAGTACCCCAGGTGCATTTGAAGTAAACAATGTAAACCAGAGTGGTCTCACTGCTCTTGATCTGCTACTAATTTTCCCAAGTGAAGCTGGTGATCGGGAAATCTACGACACTCTTCATGGTGCTGGAGCTTTGAGAGCACAAGACATAGTCCATTCTGCTATACCTTCATTTGACTCTGATAACCAAACCCTCCAGAACGGCCCTGTGGCATCAGGACCACCTCAGTTGCGGAATCCAACTGATTTCATTGAATACTTCAAGTTCAAAAAGGGAAGAGATTCTCCTAGTGATGCACGCACCGCACTGTTAGTTGTAGCTGTATTGGTGACTACAGCAACATTTCAAGTAGGACTAAGCCCTCCAACCGGTCTTTGGCAAGACACCGAGTTGAATAGGAATGGGACTAGCGGTGAACCAACACACACTGCAGGATCATCCATATTGGGGTCTTATAACGCAGCTGCATTTTTGGTTTTTGTGGCTTTCAACTCCATTGGCTTTTCGGTTTCTCTTTACATGATTAACATCCTCACAAGCAACTTCCCTATGCAGTTGGAGCTTCAGATCTGTATCGTTGCCATGTATTGTACATACAACACAGCGATGATTAGCATTGCAGAGGATAACACAAGAGTTTTCATTAGTGTGTTTACTGCGGTTTTGCCTACTGTGGTGTTACTTGCTGGCAAATCGGTTAATAGGCAAATTTTTATGAGGATCGGAGTCATTGGACTTTCTGTGGTAAATTCAGCTAGGAGATACATTTGTTCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

460

Amino Acids

50.04

Weight (kDa)

6.27

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 5 - 91 1.3e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 40 - 124 1.6e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 80 - 159 3.7e-12 Ankyrin repeats (3 copies)
Ank_2 PF12796 108 - 198 9e-14 Ankyrin repeats (3 copies)
PGG PF13962 298 - 403 6.7e-16 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1056
AccB7I CCANNNNNTGG 1 cut(s) 577
AciI CCGC 4 cut(s) 832, 903, 1011, 1259
AclWI GGATC 4 cut(s) 12, 272, 1042, 1328
AcoI YGGCCR 2 cut(s) 139, 186
AcsI RAATTY 2 cut(s) 1308, 1348
AcuI CTGAAG 1 cut(s) 1148
AdeI CACNNNGTG 1 cut(s) 574
AfaI GTAC 3 cut(s) 408, 607, 1192
AfiI CCNNNNNNNGG 5 cut(s) 298, 577, 968, 975, 1047
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 121
AgeI ACCGGT 1 cut(s) 968
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 3 cut(s) 201, 570, 610
AjuI GAANNNNNNNTTGG 4 cut(s) 167, 199, 573, 605
AluBI AGCT 9 cut(s) 182, 265, 458, 689, 731, 920, 1064, 1162, 1355
AluI AGCT 9 cut(s) 182, 265, 458, 689, 731, 920, 1064, 1162, 1355
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 4 cut(s) 12, 272, 1042, 1328
AoxI GGCC 3 cut(s) 139, 186, 802
ApeKI GCWGC 4 cut(s) 332, 455, 1061, 1064
ApoI RAATTY 2 cut(s) 1308, 1348
AsiGI ACCGGT 1 cut(s) 968
Asp700I GAANNNNTTC 1 cut(s) 880
AspS9I GGNCC 2 cut(s) 803, 818
AsuHPI GGTGA 5 cut(s) 511, 536, 704, 940, 1025
AsuII TTCGAA 1 cut(s) 1373
AvaII GGWCC 1 cut(s) 818
BaeI ACNNNNGTAYC 1 cut(s) 1354
BalI TGGCCA 2 cut(s) 141, 188
BarI GAAGNNNNNNTAC 2 cut(s) 249, 281
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 4 cut(s) 319, 467, 1051, 1073
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 817
BciT130I CCWGG 3 cut(s) 203, 572, 612
BcoDI GTCTC 1 cut(s) 653
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 6 cut(s) 98, 548, 603, 888, 1008, 1356
BfmI CTRYAG 3 cut(s) 105, 933, 1029
BfrI CTTAAG 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 147
BglII AGATCT 1 cut(s) 1167
BisI GCNGC 4 cut(s) 333, 456, 1062, 1065
BlsI GCNGC 4 cut(s) 334, 457, 1063, 1066
Bme1390I CCNGG 3 cut(s) 203, 572, 612
Bme18I GGWCC 1 cut(s) 818
BmgT120I GGNCC 2 cut(s) 803, 818
BmrFI CCNGG 3 cut(s) 203, 572, 612
BmsI GCATC 2 cut(s) 821, 883
BpmI CTGGAG 2 cut(s) 747, 779
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 1373
BsaBI GATNNNNATC 2 cut(s) 1127, 1172
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 968
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 577, 968, 975, 1047
Bse118I RCCGGY 2 cut(s) 291, 968
Bse1I ACTGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 1215
Bse8I GATNNNNATC 2 cut(s) 1127, 1172
BseBI CCWGG 3 cut(s) 203, 572, 612
BseDI CCNNGG 1 cut(s) 610
BseGI GGATG 5 cut(s) 211, 248, 504, 1037, 1128
BseJI GATNNNNATC 2 cut(s) 1127, 1172
BseLI CCNNNNNNNGG 5 cut(s) 298, 577, 968, 975, 1047
BseMI GCAATG 1 cut(s) 1215
BseMII CTCAG 1 cut(s) 839
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 4 cut(s) 319, 467, 1051, 1073
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 3 cut(s) 141, 188, 804
BshTI ACCGGT 1 cut(s) 968
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 2 cut(s) 292, 969
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 5 cut(s) 298, 577, 968, 975, 1047
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 1018
BsnI GGCC 3 cut(s) 141, 188, 804
Bso31I GGTCTC 1 cut(s) 653
Bsp119I TTCGAA 1 cut(s) 1373
Bsp1286I GDGCHC 1 cut(s) 742
Bsp1407I TGTACA 1 cut(s) 1190
Bsp143I GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
BspACI CCGC 4 cut(s) 832, 903, 1011, 1259
BspANI GGCC 3 cut(s) 141, 188, 804
BspCNI CTCAG 1 cut(s) 838
BspMAI CTGCAG 2 cut(s) 109, 1033
BspPI GGATC 4 cut(s) 12, 272, 1042, 1328
BspT104I TTCGAA 1 cut(s) 1373
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 1215
BsrFI RCCGGY 2 cut(s) 291, 968
BsrGI TGTACA 1 cut(s) 1190
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 2 cut(s) 291, 968
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
Bst2UI CCWGG 3 cut(s) 203, 572, 612
Bst4CI ACNGT 5 cut(s) 406, 446, 538, 909, 1273
Bst6I CTCTTC 4 cut(s) 298, 327, 720, 871
BstAFI CTTAAG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 58
BstAUI TGTACA 1 cut(s) 1190
BstBI TTCGAA 1 cut(s) 1373
BstC8I GCNNGC 6 cut(s) 63, 135, 139, 293, 898, 1288
BstDEI CTNAG 4 cut(s) 156, 167, 825, 956
BstF5I GGATG 5 cut(s) 211, 248, 504, 1037, 1128
BstKTI GATC 8 cut(s) 7, 280, 310, 664, 697, 1037, 1170, 1323
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
BstMWI GCNNNNNNNGC 6 cut(s) 58, 134, 147, 737, 902, 1159
BstNI CCWGG 3 cut(s) 203, 572, 612
BstSCI CCNGG 3 cut(s) 201, 570, 610
BstSFI CTRYAG 3 cut(s) 105, 933, 1029
BstV1I GCAGC 4 cut(s) 319, 467, 1051, 1073
BstX2I RGATCY 1 cut(s) 1167
BstYI RGATCY 1 cut(s) 1167
BsuRI GGCC 3 cut(s) 141, 188, 804
BtgZI GCGATG 1 cut(s) 1220
BtsCI GGATG 5 cut(s) 211, 248, 504, 1037, 1128
BtsI GCAGTG 3 cut(s) 114, 651, 1026
BtsIMutI CAGTG 4 cut(s) 114, 651, 905, 1026
Cac8I GCNNGC 6 cut(s) 63, 135, 139, 293, 898, 1288
Cfr10I RCCGGY 2 cut(s) 291, 968
Cfr13I GGNCC 2 cut(s) 803, 818
CsiI ACCWGGT 1 cut(s) 570
Csp6I GTAC 3 cut(s) 407, 606, 1191
CspAI ACCGGT 1 cut(s) 968
CspCI CAANNNNNGTGG 2 cut(s) 810, 845
CviAII CATG 7 cut(s) 143, 329, 527, 555, 719, 1120, 1183
CviQI GTAC 3 cut(s) 407, 606, 1191
DdeI CTNAG 4 cut(s) 156, 167, 825, 956
DpnI GATC 8 cut(s) 6, 279, 309, 663, 696, 1036, 1169, 1322
DpnII GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
DraIII CACNNNGTG 1 cut(s) 574
EaeI YGGCCR 2 cut(s) 139, 186
Eam1104I CTCTTC 4 cut(s) 298, 327, 720, 871
EarI CTCTTC 4 cut(s) 298, 327, 720, 871
Eco31I GGTCTC 1 cut(s) 653
Eco47I GGWCC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 1148
EcoRII CCWGG 3 cut(s) 201, 570, 610
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 7 cut(s) 146, 332, 530, 558, 722, 1123, 1186
FaqI GGGAC 1 cut(s) 1018
FatI CATG 7 cut(s) 142, 328, 526, 554, 718, 1119, 1182
Fnu4HI GCNGC 4 cut(s) 333, 456, 1062, 1065
FokI GGATG 5 cut(s) 218, 255, 491, 1024, 1115
Fsp4HI GCNGC 4 cut(s) 333, 456, 1062, 1065
FspBI CTAG 6 cut(s) 98, 548, 603, 888, 1008, 1356
GluI GCNGC 4 cut(s) 333, 456, 1062, 1065
GsuI CTGGAG 2 cut(s) 747, 779
HaeIII GGCC 3 cut(s) 141, 188, 804
HapII CCGG 2 cut(s) 292, 969
Hin1II CATG 7 cut(s) 146, 332, 530, 558, 722, 1123, 1186
HinfI GANTC 8 cut(s) 70, 101, 163, 316, 776, 835, 881, 1326
HpaII CCGG 2 cut(s) 292, 969
HphI GGTGA 5 cut(s) 511, 536, 704, 940, 1025
Hpy166II GTNNAC 6 cut(s) 112, 502, 628, 637, 1016, 1254
Hpy188I TCNGA 4 cut(s) 270, 781, 1167, 1325
Hpy188III TCNNGA 7 cut(s) 98, 383, 508, 659, 698, 796, 816
Hpy8I GTNNAC 6 cut(s) 112, 502, 628, 637, 1016, 1254
HpyAV CCTTC 3 cut(s) 490, 511, 777
HpyCH4III ACNGT 5 cut(s) 406, 446, 538, 909, 1273
HpyCH4IV ACGT 2 cut(s) 123, 513
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 134, 147, 737, 902, 1159
HpyF3I CTNAG 4 cut(s) 156, 167, 825, 956
HpySE526I ACGT 2 cut(s) 123, 513
Hsp92II CATG 7 cut(s) 146, 332, 530, 558, 722, 1123, 1186
KroI GCCGGC 1 cut(s) 291
KroNI GCCGGC 1 cut(s) 293
Kzo9I GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
LmnI GCTCC 3 cut(s) 262, 728, 1159
Lsp1109I GCAGC 4 cut(s) 319, 467, 1051, 1073
LweI GCATC 2 cut(s) 821, 883
MabI ACCWGGT 1 cut(s) 570
MaeI CTAG 6 cut(s) 98, 548, 603, 888, 1008, 1356
MaeII ACGT 2 cut(s) 123, 513
MaeIII GTNAC 4 cut(s) 400, 481, 928, 1278
MalI GATC 8 cut(s) 6, 279, 309, 663, 696, 1036, 1169, 1322
MboI GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
MboII GAAGA 7 cut(s) 314, 315, 362, 407, 533, 707, 888
MflI RGATCY 1 cut(s) 1167
MhlI GDGCHC 1 cut(s) 742
MlsI TGGCCA 2 cut(s) 141, 188
MluCI AATT 6 cut(s) 476, 594, 672, 1308, 1348, 1375
MluNI TGGCCA 2 cut(s) 141, 188
MlyI GAGTC 3 cut(s) 310, 770, 1335
MmeI TCCRAC 4 cut(s) 67, 863, 989, 1137
Mox20I TGGCCA 2 cut(s) 141, 188
Mph1103I ATGCAT 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 880
MscI TGGCCA 2 cut(s) 141, 188
MseI TTAA 4 cut(s) 297, 438, 1125, 1299
MslI CAYNNNNRTG 3 cut(s) 488, 1205, 1247
Msp20I TGGCCA 2 cut(s) 141, 188
MspA1I CMGCKG 2 cut(s) 458, 1064
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 2 cut(s) 292, 969
MspR9I CCNGG 3 cut(s) 203, 572, 612
MvaI CCWGG 3 cut(s) 203, 572, 612
MwoI GCNNNNNNNGC 6 cut(s) 58, 134, 147, 737, 902, 1159
NaeI GCCGGC 1 cut(s) 293
NdeII GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
NgoMIV GCCGGC 1 cut(s) 291
NlaIII CATG 7 cut(s) 146, 332, 530, 558, 722, 1123, 1186
NmuCI GTSAC 3 cut(s) 400, 481, 928
NsiI ATGCAT 1 cut(s) 225
NspV TTCGAA 1 cut(s) 1373
PdiI GCCGGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 5 cut(s) 70, 101, 163, 835, 881
PflFI GACNNNGTC 1 cut(s) 749
PflMI CCANNNNNTGG 1 cut(s) 577
PinAI ACCGGT 1 cut(s) 968
PkrI GCNGC 4 cut(s) 334, 457, 1063, 1066
PleI GAGTC 3 cut(s) 310, 770, 1334
PpsI GAGTC 3 cut(s) 310, 770, 1334
PsiI TTATAA 1 cut(s) 1056
Psp6I CCWGG 3 cut(s) 201, 570, 610
PspGI CCWGG 3 cut(s) 201, 570, 610
PspPI GGNCC 2 cut(s) 803, 818
PstI CTGCAG 2 cut(s) 109, 1033
PsuI RGATCY 1 cut(s) 1167
PsyI GACNNNGTC 1 cut(s) 749
PvuII CAGCTG 2 cut(s) 458, 1064
RsaI GTAC 3 cut(s) 408, 607, 1192
RsaNI GTAC 3 cut(s) 407, 606, 1191
RseI CAYNNNNRTG 3 cut(s) 488, 1205, 1247
SaqAI TTAA 4 cut(s) 297, 438, 1125, 1299
SatI GCNGC 4 cut(s) 333, 456, 1062, 1065
Sau3AI GATC 8 cut(s) 4, 277, 307, 661, 694, 1034, 1167, 1320
Sau96I GGNCC 2 cut(s) 803, 818
SchI GAGTC 3 cut(s) 310, 770, 1335
ScrFI CCNGG 3 cut(s) 203, 572, 612
SduI GDGCHC 1 cut(s) 742
SexAI ACCWGGT 1 cut(s) 570
SfaNI GCATC 2 cut(s) 821, 883
SfcI CTRYAG 3 cut(s) 105, 933, 1029
SfuI TTCGAA 1 cut(s) 1373
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 3 cut(s) 488, 1205, 1247
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 602
Sse9I AATT 6 cut(s) 476, 594, 672, 1308, 1348, 1375
SsiI CCGC 4 cut(s) 832, 903, 1011, 1259
SspMI CTAG 6 cut(s) 98, 548, 603, 888, 1008, 1356
StyD4I CCNGG 3 cut(s) 201, 570, 610
TaaI ACNGT 5 cut(s) 406, 446, 538, 909, 1273
TaiI ACGT 2 cut(s) 126, 516
TaqI TCGA 1 cut(s) 1373
TasI AATT 6 cut(s) 476, 594, 672, 1308, 1348, 1375
TatI WGTACW 2 cut(s) 406, 1190
TfiI GAWTC 5 cut(s) 70, 101, 163, 835, 881
Tru1I TTAA 4 cut(s) 297, 438, 1125, 1299
Tru9I TTAA 4 cut(s) 297, 438, 1125, 1299
TscAI CASTG 4 cut(s) 114, 658, 912, 1033
TseFI GTSAC 3 cut(s) 400, 481, 928
TseI GCWGC 4 cut(s) 332, 455, 1061, 1064
Tsp45I GTSAC 3 cut(s) 400, 481, 928
TspDTI ATGAA 6 cut(s) 212, 314, 707, 759, 838, 1231
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 4 cut(s) 114, 658, 912, 1033
Tth111I GACNNNGTC 1 cut(s) 749
Van91I CCANNNNNTGG 1 cut(s) 577
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 818
XapI RAATTY 2 cut(s) 1308, 1348
XbaI TCTAGA 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 2 cut(s) 244, 972
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 6 cut(s) 98, 548, 603, 888, 1008, 1356
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.