Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002292

Physical Location & Seq

Genomic Coordinates Forward (+)

31237706 .. 31239118

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1241500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGGACAAAAATGGCAATTCAGTTCTTCACGTAGCAACCTGGAAGAAACAACACCAGGTAGTGGAATGGTTAGTTGGCAATGGAACAACTCCAAGTGCATTGGAAGTAAACACTGTAAACCAGAGTAGTCTAACACCTCTGGATCTGCTACTAATCTTCCCGAGTGAAGCCGGCGATAGGGAAATTGAAGAGATCCTTCGTGGTGCCGGAGCTTCGAGAGCACAAGATATAGGAGCTTCGAGAGCACAAGACATACAACATACTCCCTCTCATGGTCCCATGGAAACAAATACCCTTCAGCTGCAGCAGCCAAACAACCCGATGGAATACTTCAACTCGATGGGTTCTGACGACAATAATTTTTTTGCCCGCTTTGTGGGTACCAACTCGATGGGATTTTTCGTTTCACTTTACATGATCGGTGTCCTCACCAGCAATTTCCCTATGCAGTTGGTGCTTCTAATGTGTATTCACGCGATGTACGGCACGTACAACATTGCAGTTATCAGCATTGCACCGGCGAACCCGATGGTTCCTATTTTGGCGGCTTATCAGGATCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

190

Amino Acids

20.72

Weight (kDa)

5.02

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51160
fragaria_vesca	FvH4_7g26641 FvH4_7g26643 FvH4_7g26670
malus_domestica	MD01G1175400.v1.1 MD07G1241300.v1.1 MD07G1241500.v1.1 MD12G1230800.v1.1 MD12G1230900.v1.1 MD12G1231100.v1.1 MD12G1231200.v1.1
prunus_persica	Prupe.2G270400_v2.0.a1 Prupe.2G270500_v2.0.a1
pyrus_communis	pycom07g21780 pycom07g21790 pycom07g21800 pycom07g21860 pycom07g21970 pycom12g21410
rosa_chinensis	RchiOBHm_Chr1g0373271 RchiOBHm_Chr1g0373281
rosa_laevigata	RLG00000026830 RLG00000026831 RLG00000026832
rosa_multiflora	Rmu_co8287043.1_g000001 Rmu_sc0000170.1_g000005 Rmu_ssc0000435.1_g000001 Rmu_ssc0000435.1_g000002
rosa_rugosa	Rorug01G0376800 Rorug01G0376800
rosa_samantha	Rh1AG385600 Rh1AG385700 Rh1BG349800 Rh1BG349900 Rh1CG363000 Rh1CG363100 Rh1DG380500 Rh1DG380600 Rh1DG380700 Rh7DG228200
rosa_wichuraiana	Rw1G034920 Rw1G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	2 cut(s)	206, 383
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccII	CGCG	1 cut(s)	479
AciI	CCGC	2 cut(s)	373, 548
AclWI	GGATC	3 cut(s)	153, 190, 567
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	3 cut(s)	385, 485, 494
AfiI	CCNNNNNNNGG	4 cut(s)	64, 180, 275, 379
AgsI	TTSAA	2 cut(s)	191, 337
AjnI	CCWGG	2 cut(s)	41, 57
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	3 cut(s)	215, 239, 304
AluI	AGCT	3 cut(s)	215, 239, 304
Alw21I	GWGCWC	2 cut(s)	226, 250
AlwI	GGATC	3 cut(s)	153, 190, 567
Ama87I	CYCGRG	1 cut(s)	163
ApeKI	GCWGC	3 cut(s)	304, 307, 310
Asp718I	GGTACC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	206, 383
Bbv12I	GWGCWC	2 cut(s)	226, 250
BbvI	GCAGC	3 cut(s)	291, 319, 322
BccI	CCATC	4 cut(s)	319, 337, 388, 526
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	2 cut(s)	43, 59
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	4 cut(s)	305, 308, 311, 549
BlsI	GCNGC	4 cut(s)	306, 309, 312, 550
Bme1390I	CCNGG	2 cut(s)	43, 59
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	4 cut(s)	208, 280, 385, 537
BmrFI	CCNGG	2 cut(s)	43, 59
BsaAI	YACGTR	2 cut(s)	34, 492
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 180, 275, 379
Bse118I	RCCGGY	2 cut(s)	173, 520
Bse3DI	GCAATG	3 cut(s)	88, 498, 513
BseBI	CCWGG	2 cut(s)	43, 59
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	4 cut(s)	64, 180, 275, 379
BseMI	GCAATG	3 cut(s)	88, 498, 513
BseXI	GCAGC	3 cut(s)	291, 319, 322
Bsh1236I	CGCG	1 cut(s)	479
BshNI	GGYRCC	2 cut(s)	206, 383
BsiHKAI	GWGCWC	2 cut(s)	226, 250
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	174, 210, 521
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	4 cut(s)	64, 180, 275, 379
BsmFI	GGGAC	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	226, 250
Bsp143I	GATC	4 cut(s)	145, 195, 420, 559
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	2 cut(s)	373, 548
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	4 cut(s)	208, 280, 385, 537
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	3 cut(s)	153, 190, 567
BspT107I	GGYRCC	2 cut(s)	206, 383
BsrDI	GCAATG	3 cut(s)	88, 498, 513
BsrFI	RCCGGY	2 cut(s)	173, 520
BssAI	RCCGGY	2 cut(s)	173, 520
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	145, 195, 420, 559
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	43, 59
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	2 cut(s)	34, 492
BstC8I	GCNNGC	2 cut(s)	175, 373
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	4 cut(s)	148, 198, 423, 562
BstMBI	GATC	4 cut(s)	145, 195, 420, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 245, 310, 457
BstNI	CCWGG	2 cut(s)	43, 59
BstSCI	CCNGG	2 cut(s)	41, 57
BstSFI	CTRYAG	1 cut(s)	305
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	3 cut(s)	291, 319, 322
BstX2I	RGATCY	2 cut(s)	145, 195
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	2 cut(s)	145, 195
BtgI	CCRYGG	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	175, 373
Cfr10I	RCCGGY	2 cut(s)	173, 520
Cfr13I	GGNCC	1 cut(s)	278
CsiI	ACCWGGT	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	384, 484, 493
CviAII	CATG	3 cut(s)	275, 283, 418
CviJI	RGCY	7 cut(s)	173, 215, 239, 304, 313, 551, 566
CviKI_1	RGCY	7 cut(s)	173, 215, 239, 304, 313, 551, 566
CviQI	GTAC	3 cut(s)	384, 484, 493
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	4 cut(s)	147, 197, 422, 561
DpnII	GATC	4 cut(s)	145, 195, 420, 559
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	41, 57
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	278, 286, 421
FaiI	YATR	7 cut(s)	233, 257, 264, 276, 284, 419, 449
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	3 cut(s)	274, 282, 417
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	4 cut(s)	305, 308, 311, 549
Fsp4HI	GCNGC	4 cut(s)	305, 308, 311, 549
GluI	GCNGC	4 cut(s)	305, 308, 311, 549
HapII	CCGG	3 cut(s)	174, 210, 521
Hin1II	CATG	3 cut(s)	278, 286, 421
HpaII	CCGG	3 cut(s)	174, 210, 521
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	112, 121
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	5 cut(s)	143, 163, 219, 243, 557
Hpy8I	GTNNAC	2 cut(s)	112, 121
HpyAV	CCTTC	2 cut(s)	209, 308
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	33, 491
HpyCH4V	TGCA	5 cut(s)	101, 307, 451, 503, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 245, 310, 457
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	2 cut(s)	33, 491
Hsp92II	CATG	3 cut(s)	278, 286, 421
KpnI	GGTACC	1 cut(s)	387
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	145, 195, 420, 559
LmnI	GCTCC	2 cut(s)	212, 236
Lsp1109I	GCAGC	3 cut(s)	291, 319, 322
MabI	ACCWGGT	1 cut(s)	57
MaeII	ACGT	2 cut(s)	33, 491
MalI	GATC	4 cut(s)	147, 197, 422, 561
MboI	GATC	4 cut(s)	145, 195, 420, 559
MboII	GAAGA	4 cut(s)	20, 58, 151, 203
MflI	RGATCY	2 cut(s)	145, 195
MhlI	GDGCHC	2 cut(s)	226, 250
MluCI	AATT	4 cut(s)	19, 186, 361, 439
MnlI	CCTC	3 cut(s)	150, 280, 440
MroNI	GCCGGC	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	3 cut(s)	174, 210, 521
MspR9I	CCNGG	2 cut(s)	43, 59
MvaI	CCWGG	2 cut(s)	43, 59
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	4 cut(s)	221, 245, 310, 457
NaeI	GCCGGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	145, 195, 420, 559
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	278, 286, 421
NlaIV	GGNNCC	4 cut(s)	208, 280, 385, 537
PdiI	GCCGGC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	306, 309, 312, 550
Ppu21I	YACGTR	2 cut(s)	34, 492
Psp6I	CCWGG	2 cut(s)	41, 57
PspGI	CCWGG	2 cut(s)	41, 57
PspN4I	GGNNCC	4 cut(s)	208, 280, 385, 537
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	2 cut(s)	145, 195
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	3 cut(s)	385, 485, 494
RsaNI	GTAC	3 cut(s)	384, 484, 493
SatI	GCNGC	4 cut(s)	305, 308, 311, 549
Sau3AI	GATC	4 cut(s)	145, 195, 420, 559
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	43, 59
SduI	GDGCHC	2 cut(s)	226, 250
SetI	ASST	8 cut(s)	36, 44, 63, 142, 217, 241, 306, 494
SexAI	ACCWGGT	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	305
SgrAI	CRCCGGYG	1 cut(s)	520
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	4 cut(s)	19, 186, 361, 439
SsiI	CCGC	2 cut(s)	373, 548
StyD4I	CCNGG	2 cut(s)	41, 57
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	2 cut(s)	36, 494
TaqI	TCGA	4 cut(s)	218, 242, 341, 392
TasI	AATT	4 cut(s)	19, 186, 361, 439
TauI	GCSGC	1 cut(s)	551
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	3 cut(s)	304, 307, 310
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.