MD12G1230900.v1.1

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
30598188 .. 30599660
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1230900.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGGATGCAAGGCTGTTTGACGCTTCTCAGACGGGAGATGTCCAACTTCTGCATCGATTGCTGGCAGAGAATCCACTTCTACTCCATAGCCTTGCCCTAACTTCCACAGATAATCCTTTACATGTTGCTTCGATTGCTGGGCATGTCGACTTTGTCAAGGAGATTGTGAGGTTGAAACCAGATTATGTCGAAGAACTGAACCGGGATGGTTTTAGCCCCATGCATATTGCATCCGCCAATGGGTATTTGGAAATTGTAAGGGAGATGCTGAGGGTTGACCGGAGACTCTGCCAGCTAAACGGAAGAGATGAGTGGACTCCTCTCCACTATGCCGCTAGCAGGGGGAGGGTAGACGTAATTAGAGAAATGGTCTTGGCTTGTCCAGAAAGTGTTGAAGATGTGACCGTACAAGGGGAGACTGTTATTCACCTTGCTGTTAAGTGCAGCCAGTTTAAAGCAATTAAATTTTTGGTGGAAGAATTGGTTGCAGAAGCGAACAAGGTGTACATCTTGAACATGAAGGATAAGCATGGCGACACAGTTCTTCATCTAGCAACCTGGAAAAAACAACATCAGGTGGTGGAAGGATTAGTTGGCAGTGAAACAATTGCAGGAGCCTTGGAAGTAAATTCTGTAAACGATAGGGGTCTCACAGCTTTGGATCTGGTCTTCCCAAATGAAACCGGTGATTGGGAAATGGAGGCAATCCTTCGTGGTGCTGGAGCTTTGAGAGCAGGAGATATAGTCCACTCCGGTGTCCAATTCTCCAATTCTCATAGCCCTAACCATAACCACACGTCATCAGAGACTCATCAGTTGCAGCAGGAGCAGCAGGAGCAGCAGAAGACAAATAGGTGGGAATACTTCCAGTTCAAAAAGGGCAGAGACAGTCCTAGCGATGCACGTAACGCGCTGCTAGTAGTCGCTTCACTAGTGGCTACGGCCACCTTTCAAGTGGGACTCAACCCTCCAAATGGAATTTGGCAGGACAGTAATGATGTGAATAATAGTGGGACTGGCAGCAGCAATGAACCAGTACACTTGGCAGGAAGGTCCATCATGGGTTCTTATAGTGAAGTTTCATTCGTCATTTTTGTGGTTTTCAACTCGATTGGATTTTACTTTTCTCTTTACACCATGATCGTCCTCACAGCCAATTTCCCTCTCCAGTTGGAGCTTCAAATCTGCATCATAGCGGTATACACCACCTACAGCACTGCGGTTGTCAACACATTGCACCATCGTATAACACCGGGCTCTTTATCACCGTGTTTCACATCGGTTTTGCCCTTTTTGGTCGGACTTGCTGCCAAATGGGCTAGACACCCTGTCGCAATCTGGCTTACAAAACCTCTCGGAAAATGGATCCTTCGGTTCTTTGAATTAATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

51.7

Weight (kDa)

5.94

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 5 - 90 1.9e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 100 - 160 6.5e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 137 - 199 3.5e-07 Ankyrin repeats (3 copies)
PGG PF13962 300 - 387 1.1e-16 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 147, 351, 1200
AccII CGCG 1 cut(s) 911
AciI CCGC 4 cut(s) 234, 333, 1196, 1220
AclWI GGATC 3 cut(s) 669, 1360, 1373
AcoI YGGCCR 1 cut(s) 942
AcsI RAATTY 3 cut(s) 464, 628, 978
AfaI GTAC 3 cut(s) 408, 506, 1038
AfiI CCNNNNNNNGG 5 cut(s) 240, 339, 411, 690, 974
AflIII ACRYGT 2 cut(s) 121, 795
AgeI ACCGGT 1 cut(s) 683
AgsI TTSAA 8 cut(s) 175, 395, 514, 874, 953, 1105, 1181, 1382
AhdI GACNNNNNGTC 1 cut(s) 1328
AhlI ACTAGT 1 cut(s) 931
AjiI CACGTC 1 cut(s) 798
AjnI CCWGG 1 cut(s) 557
AjuI GAANNNNNNNTTGG 2 cut(s) 576, 608
AleI CACNNNNGTG 1 cut(s) 753
AluBI AGCT 4 cut(s) 295, 656, 725, 1177
AluI AGCT 4 cut(s) 295, 656, 725, 1177
Alw26I GTCTC 5 cut(s) 277, 410, 653, 800, 879
AlwI GGATC 3 cut(s) 669, 1360, 1373
AoxI GGCC 1 cut(s) 942
ApeKI GCWGC 8 cut(s) 444, 820, 829, 838, 913, 1020, 1023, 1307
ApoI RAATTY 3 cut(s) 464, 628, 978
AseI ATTAAT 1 cut(s) 1385
AsiGI ACCGGT 1 cut(s) 683
AspLEI GCGC 1 cut(s) 913
AspS9I GGNCC 1 cut(s) 1053
AsuC2I CCSGG 2 cut(s) 203, 1254
AsuHPI GGTGA 3 cut(s) 419, 698, 1257
AsuNHI GCTAGC 1 cut(s) 335
AvaII GGWCC 1 cut(s) 1053
BamHI GGATCC 1 cut(s) 1365
BanII GRGCYC 1 cut(s) 1259
BbsI GAAGAC 2 cut(s) 661, 851
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 8 cut(s) 456, 832, 841, 850, 900, 1032, 1035, 1294
BccI CCATC 3 cut(s) 200, 1064, 1248
BceAI ACGGC 1 cut(s) 957
BciT130I CCWGG 1 cut(s) 559
BcnI CCSGG 2 cut(s) 203, 1254
BcoDI GTCTC 5 cut(s) 277, 410, 653, 800, 879
BcuI ACTAGT 1 cut(s) 931
BfaI CTAG 6 cut(s) 336, 551, 894, 917, 932, 1320
BfmI CTRYAG 1 cut(s) 1210
BglI GCCNNNNNGGC 1 cut(s) 1316
BisI GCNGC 9 cut(s) 333, 445, 821, 830, 839, 914, 1021, 1024, 1308
BlsI GCNGC 9 cut(s) 334, 446, 822, 831, 840, 915, 1022, 1025, 1309
Bme1390I CCNGG 3 cut(s) 203, 559, 1254
Bme18I GGWCC 1 cut(s) 1053
BmeRI GACNNNNNGTC 1 cut(s) 1328
BmgBI CACGTC 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 1053
BmiI GGNNCC 2 cut(s) 616, 1367
BmrFI CCNGG 3 cut(s) 203, 559, 1254
BmsI GCATC 5 cut(s) 61, 239, 255, 889, 1197
BmtI GCTAGC 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 661, 851
BpmI CTGGAG 2 cut(s) 741, 1151
Bpu10I CCTNAGC 1 cut(s) 269
BpuMI CCSGG 2 cut(s) 203, 1254
Bsa29I ATCGAT 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 905
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 1 cut(s) 618
BsaWI WCCGGW 3 cut(s) 279, 683, 752
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 729, 759
Bsc4I CCNNNNNNNGG 5 cut(s) 240, 339, 411, 690, 974
Bse118I RCCGGY 1 cut(s) 683
Bse1I ACTGG 5 cut(s) 448, 868, 1021, 1034, 1168
Bse3DI GCAATG 2 cut(s) 1033, 1232
BseBI CCWGG 1 cut(s) 559
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 3 cut(s) 10, 211, 230
BseLI CCNNNNNNNGG 5 cut(s) 240, 339, 411, 690, 974
BseMI GCAATG 2 cut(s) 1033, 1232
BseMII CTCAG 2 cut(s) 41, 260
BseNI ACTGG 5 cut(s) 448, 868, 1021, 1034, 1168
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 8 cut(s) 456, 832, 841, 850, 900, 1032, 1035, 1294
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 911
BshFI GGCC 1 cut(s) 944
BshTI ACCGGT 1 cut(s) 683
BshVI ATCGAT 1 cut(s) 55
BsiSI CCGG 5 cut(s) 202, 280, 684, 753, 1253
BslFI GGGAC 2 cut(s) 972, 1027
BslI CCNNNNNNNGG 5 cut(s) 240, 339, 411, 690, 974
BsmAI GTCTC 5 cut(s) 277, 410, 653, 800, 879
BsmFI GGGAC 2 cut(s) 972, 1027
BsnI GGCC 1 cut(s) 944
Bso31I GGTCTC 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 1259
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 3 cut(s) 661, 1140, 1365
BspACI CCGC 4 cut(s) 234, 333, 1196, 1220
BspANI GGCC 1 cut(s) 944
BspCNI CTCAG 2 cut(s) 40, 261
BspDI ATCGAT 1 cut(s) 55
BspFNI CGCG 1 cut(s) 911
BspLI GGNNCC 2 cut(s) 616, 1367
BspOI GCTAGC 1 cut(s) 339
BspPI GGATC 3 cut(s) 669, 1360, 1373
BspTNI GGTCTC 1 cut(s) 653
BsrDI GCAATG 2 cut(s) 1033, 1232
BsrFI RCCGGY 1 cut(s) 683
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 5 cut(s) 448, 868, 1021, 1034, 1168
BssAI RCCGGY 1 cut(s) 683
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 3 cut(s) 661, 1140, 1365
BssNAI GTATAC 1 cut(s) 1201
BssT1I CCWWGG 1 cut(s) 618
Bst1107I GTATAC 1 cut(s) 1201
Bst2UI CCWGG 1 cut(s) 559
Bst4CI ACNGT 6 cut(s) 406, 421, 541, 890, 992, 1269
Bst6I CTCTTC 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 58
BstAUI TGTACA 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 3 cut(s) 63, 293, 337
BstDEI CTNAG 2 cut(s) 27, 269
BstF5I GGATG 3 cut(s) 10, 211, 230
BstFNI CGCG 1 cut(s) 911
BstHHI GCGC 1 cut(s) 913
BstKTI GATC 3 cut(s) 664, 1143, 1368
BstMAI GTCTC 5 cut(s) 277, 410, 653, 800, 879
BstMBI GATC 3 cut(s) 661, 1140, 1365
BstMWI GCNNNNNNNGC 9 cut(s) 58, 134, 731, 826, 829, 835, 838, 908, 1316
BstNI CCWGG 1 cut(s) 559
BstNSI RCATGY 2 cut(s) 125, 146
BstSCI CCNGG 3 cut(s) 201, 557, 1252
BstSFI CTRYAG 1 cut(s) 1210
BstUI CGCG 1 cut(s) 911
BstV1I GCAGC 8 cut(s) 456, 832, 841, 850, 900, 1032, 1035, 1294
BstV2I GAAGAC 2 cut(s) 661, 851
BstX2I RGATCY 2 cut(s) 661, 1365
BstYI RGATCY 2 cut(s) 661, 1365
BstZ17I GTATAC 1 cut(s) 1201
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 1 cut(s) 944
BsuTUI ATCGAT 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 912
BtrI CACGTC 1 cut(s) 798
BtsCI GGATG 3 cut(s) 10, 211, 230
BtsI GCAGTG 2 cut(s) 604, 1215
BtsIMutI CAGTG 2 cut(s) 604, 1215
Cac8I GCNNGC 3 cut(s) 63, 293, 337
CfoI GCGC 1 cut(s) 913
Cfr10I RCCGGY 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 1053
ClaI ATCGAT 1 cut(s) 55
CseI GACGC 1 cut(s) 29
Csp6I GTAC 3 cut(s) 407, 505, 1037
CspAI ACCGGT 1 cut(s) 683
CviAII CATG 7 cut(s) 122, 143, 220, 517, 530, 1060, 1138
CviQI GTAC 3 cut(s) 407, 505, 1037
DdeI CTNAG 2 cut(s) 27, 269
DpnI GATC 3 cut(s) 663, 1142, 1367
DpnII GATC 3 cut(s) 661, 1140, 1365
DraI TTTAAA 1 cut(s) 454
DriI GACNNNNNGTC 1 cut(s) 1328
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 298
Eam1105I GACNNNNNGTC 1 cut(s) 1328
EarI CTCTTC 1 cut(s) 298
EciI GGCGGA 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 1259
Eco31I GGTCTC 1 cut(s) 653
Eco47I GGWCC 1 cut(s) 1053
EcoRII CCWGG 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 1259
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 7 cut(s) 125, 146, 223, 520, 533, 1063, 1141
FaqI GGGAC 2 cut(s) 972, 1027
FatI CATG 7 cut(s) 121, 142, 219, 516, 529, 1059, 1137
FblI GTMKAC 3 cut(s) 147, 351, 1200
Fnu4HI GCNGC 9 cut(s) 333, 445, 821, 830, 839, 914, 1021, 1024, 1308
FokI GGATG 3 cut(s) 17, 217, 218
FriOI GRGCYC 1 cut(s) 1259
Fsp4HI GCNGC 9 cut(s) 333, 445, 821, 830, 839, 914, 1021, 1024, 1308
FspBI CTAG 6 cut(s) 336, 551, 894, 917, 932, 1320
GlaI GCGC 1 cut(s) 912
GluI GCNGC 9 cut(s) 333, 445, 821, 830, 839, 914, 1021, 1024, 1308
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 2 cut(s) 741, 1151
HaeIII GGCC 1 cut(s) 944
HapII CCGG 5 cut(s) 202, 280, 684, 753, 1253
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 913
Hin1II CATG 7 cut(s) 125, 146, 223, 520, 533, 1063, 1141
Hin6I GCGC 1 cut(s) 911
HinP1I GCGC 1 cut(s) 911
HincII GTYRAC 3 cut(s) 148, 277, 1228
HindII GTYRAC 3 cut(s) 148, 277, 1228
HinfI GANTC 5 cut(s) 70, 285, 316, 808, 960
HpaII CCGG 5 cut(s) 202, 280, 684, 753, 1253
HphI GGTGA 3 cut(s) 419, 698, 1257
Hpy188I TCNGA 4 cut(s) 30, 805, 1301, 1358
Hpy188III TCNNGA 2 cut(s) 383, 511
HpyAV CCTTC 5 cut(s) 514, 578, 719, 1044, 1379
HpyCH4III ACNGT 6 cut(s) 406, 421, 541, 890, 992, 1269
HpyCH4IV ACGT 3 cut(s) 354, 797, 904
HpyF10VI GCNNNNNNNGC 9 cut(s) 58, 134, 731, 826, 829, 835, 838, 908, 1316
HpyF3I CTNAG 2 cut(s) 27, 269
HpySE526I ACGT 3 cut(s) 354, 797, 904
Hsp92II CATG 7 cut(s) 125, 146, 223, 520, 533, 1063, 1141
HspAI GCGC 1 cut(s) 911
Kzo9I GATC 3 cut(s) 661, 1140, 1365
LmnI GCTCC 5 cut(s) 614, 722, 826, 835, 1174
Lsp1109I GCAGC 8 cut(s) 456, 832, 841, 850, 900, 1032, 1035, 1294
LweI GCATC 5 cut(s) 61, 239, 255, 889, 1197
MaeI CTAG 6 cut(s) 336, 551, 894, 917, 932, 1320
MaeII ACGT 3 cut(s) 354, 797, 904
MaeIII GTNAC 2 cut(s) 400, 905
MalI GATC 3 cut(s) 663, 1142, 1367
MboI GATC 3 cut(s) 661, 1140, 1365
MboII GAAGA 7 cut(s) 203, 315, 407, 488, 536, 661, 856
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 2 cut(s) 661, 1365
MhlI GDGCHC 1 cut(s) 1259
MlyI GAGTC 4 cut(s) 279, 310, 802, 954
MmeI TCCRAC 3 cut(s) 67, 1152, 1279
MnlI CCTC 9 cut(s) 162, 264, 330, 339, 694, 978, 1157, 1173, 1362
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 4 cut(s) 438, 453, 462, 1385
MslI CAYNNNNRTG 2 cut(s) 753, 1094
MspI CCGG 5 cut(s) 202, 280, 684, 753, 1253
MspR9I CCNGG 3 cut(s) 203, 559, 1254
MunI CAATTG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 911
MwoI GCNNNNNNNGC 9 cut(s) 58, 134, 731, 826, 829, 835, 838, 908, 1316
NciI CCSGG 2 cut(s) 203, 1254
NdeII GATC 3 cut(s) 661, 1140, 1365
NheI GCTAGC 1 cut(s) 335
NlaIII CATG 7 cut(s) 125, 146, 223, 520, 533, 1063, 1141
NlaIV GGNNCC 2 cut(s) 616, 1367
NmuCI GTSAC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 2 cut(s) 125, 146
OliI CACNNNNGTG 1 cut(s) 753
PciI ACATGT 1 cut(s) 121
PfeI GAWTC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 683
PkrI GCNGC 9 cut(s) 334, 446, 822, 831, 840, 915, 1022, 1025, 1309
PleI GAGTC 4 cut(s) 279, 310, 802, 954
PpsI GAGTC 4 cut(s) 279, 310, 802, 954
Ppu21I YACGTR 1 cut(s) 905
PscI ACATGT 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 1385
Psp6I CCWGG 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 2 cut(s) 616, 1367
PspPI GGNCC 1 cut(s) 1053
PsrI GAACNNNNNNTAC 2 cut(s) 488, 520
PsuI RGATCY 2 cut(s) 661, 1365
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 3 cut(s) 408, 506, 1038
RsaNI GTAC 3 cut(s) 407, 505, 1037
RseI CAYNNNNRTG 2 cut(s) 753, 1094
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 4 cut(s) 438, 453, 462, 1385
SatI GCNGC 9 cut(s) 333, 445, 821, 830, 839, 914, 1021, 1024, 1308
Sau3AI GATC 3 cut(s) 661, 1140, 1365
Sau96I GGNCC 1 cut(s) 1053
SchI GAGTC 4 cut(s) 279, 310, 802, 954
ScrFI CCNGG 3 cut(s) 203, 559, 1254
SduI GDGCHC 1 cut(s) 1259
SfaNI GCATC 5 cut(s) 61, 239, 255, 889, 1197
SfcI CTRYAG 1 cut(s) 1210
SinI GGWCC 1 cut(s) 1053
SmiMI CAYNNNNRTG 2 cut(s) 753, 1094
SpeI ACTAGT 1 cut(s) 931
SsiI CCGC 4 cut(s) 234, 333, 1196, 1220
SspMI CTAG 6 cut(s) 336, 551, 894, 917, 932, 1320
StyD4I CCNGG 3 cut(s) 201, 557, 1252
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 6 cut(s) 406, 421, 541, 890, 992, 1269
TaiI ACGT 3 cut(s) 357, 800, 907
TaqI TCGA 5 cut(s) 55, 131, 147, 189, 1109
TatI WGTACW 2 cut(s) 504, 1036
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 4 cut(s) 438, 453, 462, 1385
Tru9I TTAA 4 cut(s) 438, 453, 462, 1385
TscAI CASTG 2 cut(s) 604, 1222
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 8 cut(s) 444, 820, 829, 838, 913, 1020, 1023, 1307
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 5 cut(s) 533, 536, 693, 1044, 1071
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 2 cut(s) 604, 1222
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 1053
VspI ATTAAT 1 cut(s) 1385
XapI RAATTY 3 cut(s) 464, 628, 978
XceI RCATGY 2 cut(s) 125, 146
XcmI CCANNNNNNNNNTGG 3 cut(s) 244, 952, 978
XmiI GTMKAC 3 cut(s) 147, 351, 1200
XspI CTAG 6 cut(s) 336, 551, 894, 917, 932, 1320
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.