Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002292

Physical Location & Seq

Genomic Coordinates Forward (+)

60246032 .. 60246719

Gene Structure 688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG380500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATACTAGGCTGCTTGAGGCTTCTCAAACTGGAAATGTCCAGCTTTTGCATCAATTGCTGAGAGACGATCCACAGCTTCTGCATAATGTTTTGCTAGCTTCCGGAGAGAATCCCTTGTATGTTGCTTCCGCTGCTGGTCATGTGGAATTTGTCGAGGTGATTCTAGAGTTGAAACCAGCTTTGGCCAAAGTATTCAACAAGGATGGCTTTAGCCCCATGGATGCGGCATCTGCCAATGGCTATCTGGAGATTGTAAGGGCTCTGCAGAAAGCTTTACCTGAACTCTCCCAGGATAAAGGAAAAGATCAGTGGACTCCACTGCATCATGCTGCTAGAAGAGGGAGGGTAGATGTTATCCGAGAAATAGTTTCGGCTTGTCCAGAAAGTGTTGAAGATGTGACAAGACAAGGGGAGACTGCGTTACACCTTGCTGTTAAGAACAGCCAATTTGAAGCAATAAGAGTCCTGTTGGAATTGGTGCGAGAAATGGACAAGCTGCATGTCATGAATATGAAGGATAATCTTGGCAACTCAGTTCTTCATGTAGCAACTTGGAAAAAGCAACACCAGGCAAGTGCCTTTTTGACACTTCTATTTGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

202

Amino Acids

22.49

Weight (kDa)

5.98

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	6 - 90	2.9e-10	Ankyrin repeats (3 copies)
Ank_2	PF12796	99 - 159	6.8e-12	Ankyrin repeats (3 copies)
Ank_2	PF12796	137 - 193	5.8e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51160
fragaria_vesca	FvH4_7g26641 FvH4_7g26643 FvH4_7g26670
malus_domestica	MD01G1175400.v1.1 MD07G1241300.v1.1 MD07G1241500.v1.1 MD12G1230800.v1.1 MD12G1230900.v1.1 MD12G1231100.v1.1 MD12G1231200.v1.1
prunus_persica	Prupe.2G270400_v2.0.a1 Prupe.2G270500_v2.0.a1
pyrus_communis	pycom07g21780 pycom07g21790 pycom07g21800 pycom07g21860 pycom07g21970 pycom12g21410
rosa_chinensis	RchiOBHm_Chr1g0373271 RchiOBHm_Chr1g0373281
rosa_laevigata	RLG00000026830 RLG00000026831 RLG00000026832
rosa_multiflora	Rmu_co8287043.1_g000001 Rmu_sc0000170.1_g000005 Rmu_ssc0000435.1_g000001 Rmu_ssc0000435.1_g000002
rosa_rugosa	Rorug01G0376800 Rorug01G0376800
rosa_samantha	Rh1AG385600 Rh1AG385700 Rh1BG349800 Rh1BG349900 Rh1CG363000 Rh1CG363100 Rh1DG380500 Rh1DG380600 Rh1DG380700 Rh7DG228200
rosa_wichuraiana	Rw1G034920 Rw1G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	104
AciI	CCGC	2 cut(s)	132, 227
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	175, 199, 395, 455, 602
AjnI	CCWGG	2 cut(s)	291, 570
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	6 cut(s)	46, 79, 101, 182, 275, 499
AluI	AGCT	6 cut(s)	46, 79, 101, 182, 275, 499
Alw26I	GTCTC	2 cut(s)	60, 410
AlwI	GGATC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	4 cut(s)	13, 134, 332, 499
ApoI	RAATTY	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	172
AsuNHI	GCTAGC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	265
BbvI	GCAGC	3 cut(s)	121, 319, 486
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	293, 572
BcoDI	GTCTC	2 cut(s)	60, 410
BfaI	CTAG	5 cut(s)	9, 98, 167, 336, 607
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	5 cut(s)	14, 135, 228, 333, 500
BlsI	GCNGC	5 cut(s)	15, 136, 229, 334, 501
Bme1390I	CCNGG	2 cut(s)	293, 572
BmrFI	CCNGG	2 cut(s)	293, 572
BmsI	GCATC	4 cut(s)	61, 214, 239, 334
BmtI	GCTAGC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	219, 291
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bse1I	ACTGG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	293, 572
BseDI	CCNNGG	2 cut(s)	219, 291
BseGI	GGATG	2 cut(s)	211, 229
BseMII	CTCAG	2 cut(s)	53, 549
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	121, 319, 486
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	60, 410
BsmBI	CGTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp13I	TCCGGA	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	70, 307
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	2 cut(s)	132, 227
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	54, 548
BspEI	TCCGGA	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	219, 291
BssMI	GATC	2 cut(s)	70, 307
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	293, 572
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	62, 535
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	211, 229
BstKTI	GATC	2 cut(s)	73, 310
BstMAI	GTCTC	2 cut(s)	60, 410
BstMBI	GATC	2 cut(s)	70, 307
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 134, 233
BstNI	CCWGG	2 cut(s)	293, 572
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	291, 570
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	121, 319, 486
BsuRI	GGCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	211, 229
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	317, 320
Cac8I	GCNNGC	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	82
CciI	TCATGA	1 cut(s)	507
CviAII	CATG	6 cut(s)	143, 220, 329, 503, 508, 545
DdeI	CTNAG	2 cut(s)	62, 535
DpnI	GATC	2 cut(s)	72, 309
DpnII	GATC	2 cut(s)	70, 307
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	291, 570
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	6 cut(s)	146, 223, 332, 506, 511, 548
FaiI	YATR	9 cut(s)	87, 123, 144, 221, 330, 504, 509, 515, 546
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	6 cut(s)	142, 219, 328, 502, 507, 544
Fnu4HI	GCNGC	5 cut(s)	14, 135, 228, 333, 500
FokI	GGATG	2 cut(s)	218, 236
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	5 cut(s)	14, 135, 228, 333, 500
FspBI	CTAG	5 cut(s)	9, 98, 167, 336, 607
GluI	GCNGC	5 cut(s)	14, 135, 228, 333, 500
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	6 cut(s)	146, 223, 332, 506, 511, 548
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	5 cut(s)	112, 163, 316, 465, 602
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	5 cut(s)	105, 167, 248, 383, 508
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	1 cut(s)	511
HpyCH4V	TGCA	5 cut(s)	52, 85, 268, 325, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 134, 233
HpyF3I	CTNAG	2 cut(s)	62, 535
Hsp92II	CATG	6 cut(s)	146, 223, 332, 506, 511, 548
Kpn2I	TCCGGA	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	70, 307
Lsp1109I	GCAGC	3 cut(s)	121, 319, 486
LweI	GCATC	4 cut(s)	61, 214, 239, 334
MaeI	CTAG	5 cut(s)	9, 98, 167, 336, 607
MaeIII	GTNAC	2 cut(s)	400, 423
MalI	GATC	2 cut(s)	72, 309
MboI	GATC	2 cut(s)	70, 307
MboII	GAAGA	3 cut(s)	351, 407, 533
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	4 cut(s)	56, 149, 449, 476
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	310, 474
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	4 cut(s)	13, 151, 335, 339
Mox20I	TGGCCA	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	293, 572
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	293, 572
MwoI	GCNNNNNNNGC	3 cut(s)	58, 134, 233
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	70, 307
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	6 cut(s)	146, 223, 332, 506, 511, 548
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	506
PagI	TCATGA	1 cut(s)	507
PfeI	GAWTC	3 cut(s)	112, 163, 602
PkrI	GCNGC	5 cut(s)	15, 136, 229, 334, 501
PleI	GAGTC	2 cut(s)	310, 473
PpsI	GAGTC	2 cut(s)	310, 473
Psp6I	CCWGG	2 cut(s)	291, 570
PspGI	CCWGG	2 cut(s)	291, 570
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	14, 135, 228, 333, 500
Sau3AI	GATC	2 cut(s)	70, 307
SchI	GAGTC	2 cut(s)	310, 474
ScrFI	CCNGG	2 cut(s)	293, 572
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	9 cut(s)	48, 81, 103, 162, 184, 277, 283, 432, 501
SfaNI	GCATC	4 cut(s)	61, 214, 239, 334
SfcI	CTRYAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	4 cut(s)	56, 149, 449, 476
SsiI	CCGC	2 cut(s)	132, 227
SspMI	CTAG	5 cut(s)	9, 98, 167, 336, 607
StyD4I	CCNGG	2 cut(s)	291, 570
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	1 cut(s)	156
TasI	AATT	4 cut(s)	56, 149, 449, 476
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	3 cut(s)	112, 163, 602
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	317, 327
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	4 cut(s)	13, 134, 332, 499
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	524, 530, 533
TspRI	CASTG	2 cut(s)	317, 327
XapI	RAATTY	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	5 cut(s)	9, 98, 167, 336, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.