Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002292

Physical Location & Seq

Genomic Coordinates Reverse (-)

6352990 .. 6354677

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGAGCTGTACGAGTCGGACCAAACACAAAGGCTGTTTGAGGCTTCTCAAACTGGAAATGTCCAGGTTCTGCATCAATTGCTGGCAGAAAGTCAACTTCTTCTGCATAATGTTTCGCTAGCTTCCAGAGAAGGCCCCTTGCACGTTGCTTCGGCTGCTGGCCACATTGAATTTGTCAAGGAAACTGTAAGGTTGAAACCAGCTTTTGCCGAAGAAATGAACCAGGATGGCTTTAGCCCCATGCATATTGCAGCTGCGAATGGCTTTCTGGAAATCGTAAGGGAGCTGCTTACAGTTGACCCTAAACTCTCCCAGCTTAAAGGAAGAGATCAATGGACTCCACTGCATTATGCTGCTGTGGGAGGGAGGGTGGATATCATCCAAGAAATGGTTTTGGCTTGTCCAGAAAGTGTTGAACATGTGACTGTACTAGGTGAGACTGTGTTTCACCTTGCGGTTAAGAACAGCCAGTTTGAAGCTGTTAGAGTTTTGCTGAAATTGGTGCGAGCAACAGGCAAGCTGAACATCCTCTATATGAAGGATAATCTTGGGAATACAGTTCTTCATCTAGCAACTTGGAAAAAGCAACACCAGGTGGTGGAATGGTTAGTTCACATTGGAACTGGTCCAGCAGGTGCGTTGGAAGTAAACAATGTAAATCAGAGTGGTCTCACCGCTCTCGATCTGCTACTAATTTTCCCTAGTGAAGCCGGTGATAGGGAAATGGAGGAGATTCTTCACGGGGCTGGAGCTTTGAGAGCACGAGACATAGTCCATCCTAGTTCTGACGTTCTTTCCTCTAGTCAGAATCACAATCAAATGGCATTGGAGACACATCAAGAGCAGCCAAGTAATGTTTCTTTGAGAGCAGTAGATCTAGTCCATTGTAGTTTCAAAGGACCTTCATCAAGTCAGAATCATAACCAAATGGTGTCAGACACCCATCAAGAGCAGCCAAATGATGCGGCTTTGAGAGCAGTAGATATAGTCCATTCTACTTCTGATAATTCGTTCCATGTGACTCTCCTGATAACCATTCTCAAATGGCATCAGAGACACATCATGAGCAGCCAGACAATTTGGTGGAGTACTTCAAGTTCAGAATGGGAAGAGACTCTCCTAGTGATGCACGTACTGCACTCTTACTCCATACTTTTTGCGGTTTTCAACTCCATTGGATTTTCGGTTTCTCTTCACATGATCAATATTCTCACAACCAATTTTCCTTTGCGGTTGGAGCTTCAAGTTTGTGGTATTGCAATGTACTTTACCTACATCAATGGATTGATTACTATTGCTCCAGGCAAAACCGCAGGGTGGTATTCACTGTTTGCACTTACGCCAGCTTTGCCTCCGGTGGTACTATTTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

459

Amino Acids

50.75

Weight (kDa)

5.83

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	12 - 99	1.7e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	47 - 130	3.1e-13	Ankyrin repeats (3 copies)
Ank_2	PF12796	139 - 206	1.5e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51160
fragaria_vesca	FvH4_7g26641 FvH4_7g26643 FvH4_7g26670
malus_domestica	MD01G1175400.v1.1 MD07G1241300.v1.1 MD07G1241500.v1.1 MD12G1230800.v1.1 MD12G1230900.v1.1 MD12G1231100.v1.1 MD12G1231200.v1.1
prunus_persica	Prupe.2G270400_v2.0.a1 Prupe.2G270500_v2.0.a1
pyrus_communis	pycom07g21780 pycom07g21790 pycom07g21800 pycom07g21860 pycom07g21970 pycom12g21410
rosa_chinensis	RchiOBHm_Chr1g0373271 RchiOBHm_Chr1g0373281
rosa_laevigata	RLG00000026830 RLG00000026831 RLG00000026832
rosa_multiflora	Rmu_co8287043.1_g000001 Rmu_sc0000170.1_g000005 Rmu_ssc0000435.1_g000001 Rmu_ssc0000435.1_g000002
rosa_rugosa	Rorug01G0376800 Rorug01G0376800
rosa_samantha	Rh1AG385600 Rh1AG385700 Rh1BG349800 Rh1BG349900 Rh1CG363000 Rh1CG363100 Rh1DG380500 Rh1DG380600 Rh1DG380700 Rh7DG228200
rosa_wichuraiana	Rw1G034920 Rw1G034930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	623
AccB7I	CCANNNNNTGG	2 cut(s)	388, 598
AccBSI	CCGCTC	1 cut(s)	677
AciI	CCGC	6 cut(s)	455, 675, 965, 1160, 1231, 1311
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	595
AfaI	GTAC	6 cut(s)	11, 429, 1090, 1134, 1265, 1362
AfiI	CCNNNNNNNGG	4 cut(s)	388, 598, 717, 1317
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	8 cut(s)	170, 196, 416, 476, 895, 1095, 1168, 1244
AjnI	CCWGG	4 cut(s)	63, 222, 591, 1300
AjuI	GAANNNNNNNTTGG	2 cut(s)	841, 873
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	6 cut(s)	431, 674, 759, 824, 1048, 1106
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	133, 160
ApeKI	GCWGC	9 cut(s)	155, 251, 254, 286, 353, 844, 952, 1068, 1370
ApoI	RAATTY	1 cut(s)	170
AspS9I	GGNCC	4 cut(s)	19, 134, 626, 899
AsuHPI	GGTGA	4 cut(s)	440, 446, 664, 725
AsuNHI	GCTAGC	1 cut(s)	118
AvaII	GGWCC	3 cut(s)	19, 626, 899
BalI	TGGCCA	1 cut(s)	162
BauI	CACGAG	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	9 cut(s)	142, 241, 263, 273, 340, 856, 964, 1080, 1357
BccI	CCATC	3 cut(s)	221, 783, 951
BciT130I	CCWGG	4 cut(s)	65, 224, 593, 1302
BclI	TGATCA	1 cut(s)	1200
BcoDI	GTCTC	6 cut(s)	431, 674, 759, 824, 1048, 1106
BfaI	CTAG	8 cut(s)	119, 431, 569, 702, 780, 801, 878, 1121
BfuAI	ACCTGC	1 cut(s)	623
BglII	AGATCT	1 cut(s)	874
BmcAI	AGTACT	1 cut(s)	1090
Bme1390I	CCNGG	4 cut(s)	65, 224, 593, 1302
Bme18I	GGWCC	3 cut(s)	19, 626, 899
BmgT120I	GGNCC	4 cut(s)	19, 134, 626, 899
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	4 cut(s)	65, 224, 593, 1302
BmsI	GCATC	4 cut(s)	82, 952, 1057, 1116
BmtI	GCTAGC	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	768, 1284
BsaAI	YACGTR	1 cut(s)	1132
BsaI	GGTCTC	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	1354
BsaXI	ACNNNNNCTCC	6 cut(s)	354, 384, 1130, 1160, 1282, 1312
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 598, 717, 1317
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	3 cut(s)	58, 469, 628
Bse3DI	GCAATG	1 cut(s)	1266
BseBI	CCWGG	4 cut(s)	65, 224, 593, 1302
BseGI	GGATG	4 cut(s)	232, 378, 525, 775
BseLI	CCNNNNNNNGG	4 cut(s)	388, 598, 717, 1317
BseMI	GCAATG	1 cut(s)	1266
BseNI	ACTGG	3 cut(s)	58, 469, 628
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	9 cut(s)	142, 241, 263, 273, 340, 856, 964, 1080, 1357
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	1121
BshFI	GGCC	2 cut(s)	135, 162
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	2 cut(s)	711, 1355
BslI	CCNNNNNNNGG	4 cut(s)	388, 598, 717, 1317
BsmAI	GTCTC	6 cut(s)	431, 674, 759, 824, 1048, 1106
BsnI	GGCC	2 cut(s)	135, 162
Bso31I	GGTCTC	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	4 cut(s)	328, 682, 874, 1200
BspACI	CCGC	6 cut(s)	455, 675, 965, 1160, 1231, 1311
BspANI	GGCC	2 cut(s)	135, 162
BspHI	TCATGA	1 cut(s)	1062
BspLI	GGNNCC	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	623
BspOI	GCTAGC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	1266
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	58, 469, 628
BssAI	RCCGGY	1 cut(s)	710
BssMI	GATC	4 cut(s)	328, 682, 874, 1200
BssSI	CACGAG	1 cut(s)	762
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	4 cut(s)	65, 224, 593, 1302
Bst4CI	ACNGT	6 cut(s)	187, 295, 427, 442, 559, 1329
Bst6I	CTCTTC	3 cut(s)	319, 1104, 1197
BstAPI	GCANNNNNTGC	2 cut(s)	79, 1135
BstBAI	YACGTR	1 cut(s)	1132
BstC8I	GCNNGC	6 cut(s)	84, 120, 160, 507, 518, 1344
BstF5I	GGATG	4 cut(s)	232, 378, 525, 775
BstKTI	GATC	4 cut(s)	331, 685, 877, 1203
BstMAI	GTCTC	6 cut(s)	431, 674, 759, 824, 1048, 1106
BstMBI	GATC	4 cut(s)	328, 682, 874, 1200
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 155, 758, 974, 1135, 1237, 1348
BstNI	CCWGG	4 cut(s)	65, 224, 593, 1302
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	4 cut(s)	63, 222, 591, 1300
BstV1I	GCAGC	9 cut(s)	142, 241, 263, 273, 340, 856, 964, 1080, 1357
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuRI	GGCC	2 cut(s)	135, 162
BtsCI	GGATG	4 cut(s)	232, 378, 525, 775
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	2 cut(s)	341, 1325
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	6 cut(s)	84, 120, 160, 507, 518, 1344
CaiI	CAGNNNCTG	1 cut(s)	70
CciI	TCATGA	1 cut(s)	1062
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	4 cut(s)	19, 134, 626, 899
CsiI	ACCWGGT	1 cut(s)	591
Csp6I	GTAC	6 cut(s)	10, 428, 1089, 1133, 1264, 1361
CviAII	CATG	5 cut(s)	241, 419, 1016, 1063, 1198
CviQI	GTAC	6 cut(s)	10, 428, 1089, 1133, 1264, 1361
DpnI	GATC	4 cut(s)	330, 684, 876, 1202
DpnII	GATC	4 cut(s)	328, 682, 874, 1200
DraIII	CACNNNGTG	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	3 cut(s)	319, 1104, 1197
EarI	CTCTTC	3 cut(s)	319, 1104, 1197
Eco31I	GGTCTC	1 cut(s)	674
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	19, 626, 899
EcoO109I	RGGNCCY	2 cut(s)	134, 899
EcoRII	CCWGG	4 cut(s)	63, 222, 591, 1300
EcoRV	GATATC	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	246
FaeI	CATG	5 cut(s)	244, 422, 1019, 1066, 1201
FatI	CATG	5 cut(s)	240, 418, 1015, 1062, 1197
FbaI	TGATCA	1 cut(s)	1200
FokI	GGATG	4 cut(s)	239, 365, 512, 762
FspBI	CTAG	8 cut(s)	119, 431, 569, 702, 780, 801, 878, 1121
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	2 cut(s)	768, 1284
HaeIII	GGCC	2 cut(s)	135, 162
HapII	CCGG	2 cut(s)	711, 1355
Hin1II	CATG	5 cut(s)	244, 422, 1019, 1066, 1201
HincII	GTYRAC	2 cut(s)	95, 298
HindII	GTYRAC	2 cut(s)	95, 298
HinfI	GANTC	7 cut(s)	14, 337, 733, 808, 916, 1021, 1114
HpaII	CCGG	2 cut(s)	711, 1355
HphI	GGTGA	4 cut(s)	440, 446, 664, 725
Hpy166II	GTNNAC	4 cut(s)	95, 298, 613, 649
Hpy188I	TCNGA	9 cut(s)	19, 663, 787, 807, 915, 937, 1003, 1053, 1102
Hpy188III	TCNNGA	8 cut(s)	126, 269, 404, 680, 839, 947, 1027, 1063
Hpy8I	GTNNAC	4 cut(s)	95, 298, 613, 649
HpyAV	CCTTC	3 cut(s)	125, 532, 912
HpyCH4III	ACNGT	6 cut(s)	187, 295, 427, 442, 559, 1329
HpyCH4IV	ACGT	3 cut(s)	144, 789, 1131
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 155, 758, 974, 1135, 1237, 1348
HpySE526I	ACGT	3 cut(s)	144, 789, 1131
Hsp92II	CATG	5 cut(s)	244, 422, 1019, 1066, 1201
Ksp22I	TGATCA	1 cut(s)	1200
Kzo9I	GATC	4 cut(s)	328, 682, 874, 1200
LmnI	GCTCC	5 cut(s)	4, 283, 749, 1237, 1303
Lsp1109I	GCAGC	9 cut(s)	142, 241, 263, 273, 340, 856, 964, 1080, 1357
LweI	GCATC	4 cut(s)	82, 952, 1057, 1116
MabI	ACCWGGT	1 cut(s)	591
MaeI	CTAG	8 cut(s)	119, 431, 569, 702, 780, 801, 878, 1121
MaeII	ACGT	3 cut(s)	144, 789, 1131
MaeIII	GTNAC	2 cut(s)	421, 1018
MalI	GATC	4 cut(s)	330, 684, 876, 1202
MbiI	CCGCTC	1 cut(s)	677
MboI	GATC	4 cut(s)	328, 682, 874, 1200
MboII	GAAGA	7 cut(s)	92, 224, 336, 554, 728, 1121, 1184
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	1 cut(s)	763
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	7 cut(s)	77, 170, 497, 693, 1006, 1077, 1219
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	4 cut(s)	23, 331, 1015, 1108
MmeI	TCCRAC	2 cut(s)	621, 1215
MnlI	CCTC	7 cut(s)	34, 356, 360, 539, 721, 808, 1362
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	318, 459
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	2 cut(s)	711, 1355
MspR9I	CCNGG	4 cut(s)	65, 224, 593, 1302
MunI	CAATTG	1 cut(s)	77
MvaI	CCWGG	4 cut(s)	65, 224, 593, 1302
MwoI	GCNNNNNNNGC	7 cut(s)	79, 155, 758, 974, 1135, 1237, 1348
NdeII	GATC	4 cut(s)	328, 682, 874, 1200
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	5 cut(s)	244, 422, 1019, 1066, 1201
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	421, 1018
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	1 cut(s)	1062
PaqCI	CACCTGC	1 cut(s)	623
PciI	ACATGT	1 cut(s)	418
PfeI	GAWTC	3 cut(s)	733, 808, 916
PflFI	GACNNNGTC	1 cut(s)	770
PflMI	CCANNNNNTGG	2 cut(s)	388, 598
PleI	GAGTC	4 cut(s)	22, 331, 1015, 1108
PpsI	GAGTC	4 cut(s)	22, 331, 1015, 1108
Ppu21I	YACGTR	1 cut(s)	1132
PpuMI	RGGWCCY	1 cut(s)	899
PscI	ACATGT	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	899
Psp6I	CCWGG	4 cut(s)	63, 222, 591, 1300
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	4 cut(s)	63, 222, 591, 1300
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	4 cut(s)	19, 134, 626, 899
PspPPI	RGGWCCY	1 cut(s)	899
PsrI	GAACNNNNNNTAC	2 cut(s)	1081, 1113
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	874
PsyI	GACNNNGTC	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	6 cut(s)	11, 429, 1090, 1134, 1265, 1362
RsaNI	GTAC	6 cut(s)	10, 428, 1089, 1133, 1264, 1361
SaqAI	TTAA	2 cut(s)	318, 459
Sau3AI	GATC	4 cut(s)	328, 682, 874, 1200
Sau96I	GGNCC	4 cut(s)	19, 134, 626, 899
ScaI	AGTACT	1 cut(s)	1090
SchI	GAGTC	4 cut(s)	23, 331, 1015, 1108
ScrFI	CCNGG	4 cut(s)	65, 224, 593, 1302
SduI	GDGCHC	1 cut(s)	763
SexAI	ACCWGGT	1 cut(s)	591
SfaNI	GCATC	4 cut(s)	82, 952, 1057, 1116
SinI	GGWCC	3 cut(s)	19, 626, 899
Sse9I	AATT	7 cut(s)	77, 170, 497, 693, 1006, 1077, 1219
SsiI	CCGC	6 cut(s)	455, 675, 965, 1160, 1231, 1311
SspI	AATATT	1 cut(s)	1207
SspMI	CTAG	8 cut(s)	119, 431, 569, 702, 780, 801, 878, 1121
StyD4I	CCNGG	4 cut(s)	63, 222, 591, 1300
TaaI	ACNGT	6 cut(s)	187, 295, 427, 442, 559, 1329
TaiI	ACGT	3 cut(s)	147, 792, 1134
TaqI	TCGA	1 cut(s)	681
TasI	AATT	7 cut(s)	77, 170, 497, 693, 1006, 1077, 1219
TatI	WGTACW	3 cut(s)	427, 1088, 1263
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	3 cut(s)	733, 808, 916
Tru1I	TTAA	2 cut(s)	318, 459
Tru9I	TTAA	2 cut(s)	318, 459
TscAI	CASTG	2 cut(s)	348, 1332
TseFI	GTSAC	2 cut(s)	421, 1018
TseI	GCWGC	9 cut(s)	155, 251, 254, 286, 353, 844, 952, 1068, 1370
Tsp45I	GTSAC	2 cut(s)	421, 1018
TspDTI	ATGAA	4 cut(s)	233, 551, 554, 894
TspRI	CASTG	2 cut(s)	348, 1332
Tth111I	GACNNNGTC	1 cut(s)	770
Van91I	CCANNNNNTGG	2 cut(s)	388, 598
VpaK11BI	GGWCC	3 cut(s)	19, 626, 899
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	8 cut(s)	119, 431, 569, 702, 780, 801, 878, 1121
ZrmI	AGTACT	1 cut(s)	1090
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.