Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002279

Physical Location & Seq

Genomic Coordinates Forward (+)

16069484 .. 16074706

Gene Structure 5223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1080500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTCCCAATCCTCCTCGCCACTCCACAAGTGGAGAATACTGCTTACAAAACTCAGGTGTCCCGCAATGCGAACATAACGAAACTTGAAGCTGGTTATCTCTTTCCAGAGATTGCTAGGAGAAGGGCTGAGCACTTGCAGAAGTACCCTGATGCACAAGTAATTAGCCTTGGGACTGGTAACACCACTCAGCCCATTCCAGAAGTTATAACCTCTGCAATGGCAAAGCCACTAAGAGCTTCAATTGCCTCAGCATTTTATGACAACCTTGGCATCGAGGAAGATGACATCTTTGTTTCTGACGGTGCAAAATGTGACATATCCCGCCTTCAGGTTGTTTTTGGGTCTAATGTTACAATGGCAGTGCAAGATCCATCTTATCCGTTAACGCGAAGCGAACTGTTCAGATACCGCTTTAAATTAAGTAGAAGCTTCTTTTCTTTTCTGCAGGCTTATGTAGCCTTGAGTGTTATCATGGGCCAGACTGGACAGTATCAGAAAGATGTTGAAAAGTTTAGAAATATCGAGTACATGAGGTGTACTCCTGAGAATGGTTTCTTCCCTGTTTATGCGCTGTTTCTCGAACAGATATCATATTTTTCTGCTCTCCAAACAACCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

217

Amino Acids

24.35

Weight (kDa)

6.6

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002279)

Species	Orthologous Gene IDs
malus_domestica	MD00G1080500.v1.1 MD16G1285200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801
rosa_laevigata	RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984
rosa_multiflora	Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312410 Rroxscaffold_7G00187620
rosa_rugosa	Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700
rosa_samantha	Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500
rosa_wichuraiana	Rw4G014860 Rw6G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AccII	CGCG	1 cut(s)	391
AciI	CCGC	3 cut(s)	64, 325, 412
AclWI	GGATC	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	3 cut(s)	146, 530, 541
AfiI	CCNNNNNNNGG	2 cut(s)	331, 551
AgsI	TTSAA	3 cut(s)	89, 243, 509
AluBI	AGCT	3 cut(s)	92, 239, 432
AluI	AGCT	3 cut(s)	92, 239, 432
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	631
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	446
BisI	GCNGC	1 cut(s)	632
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	478
BmsI	GCATC	2 cut(s)	142, 282
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
Bpu10I	CCTNAGC	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	169, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 551
Bse1I	ACTGG	3 cut(s)	181, 490, 627
Bse3DI	GCAATG	2 cut(s)	73, 225
BseDI	CCNNGG	2 cut(s)	169, 268
BseLI	CCNNNNNNNGG	2 cut(s)	331, 551
BseMI	GCAATG	2 cut(s)	73, 225
BseMII	CTCAG	5 cut(s)	68, 120, 203, 264, 537
BseNI	ACTGG	3 cut(s)	181, 490, 627
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	46, 187
BslI	CCNNNNNNNGG	2 cut(s)	331, 551
BsmFI	GGGAC	2 cut(s)	46, 187
BsnI	GGCC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	370
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	3 cut(s)	64, 325, 412
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	5 cut(s)	67, 121, 202, 263, 538
BspFNI	CGCG	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	73, 225
BsrI	ACTGG	3 cut(s)	181, 490, 627
BssECI	CCNNGG	2 cut(s)	169, 268
BssMI	GATC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	169, 268
Bst4CI	ACNGT	3 cut(s)	305, 402, 492
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	6 cut(s)	54, 129, 189, 233, 250, 546
BstFNI	CGCG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 458
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	450
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	478
Csp6I	GTAC	3 cut(s)	145, 529, 540
CviAII	CATG	2 cut(s)	475, 532
CviQI	GTAC	3 cut(s)	145, 529, 540
DdeI	CTNAG	6 cut(s)	54, 129, 189, 233, 250, 546
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DraI	TTTAAA	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	169, 268
Eco32I	GATATC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	169, 268
ErhI	CCWWGG	2 cut(s)	169, 268
FaeI	CATG	2 cut(s)	478, 535
FaiI	YATR	9 cut(s)	77, 209, 261, 320, 456, 476, 533, 570, 595
FaqI	GGGAC	2 cut(s)	46, 187
FatI	CATG	2 cut(s)	474, 531
FauI	CCCGC	2 cut(s)	71, 332
Fnu4HI	GCNGC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	632
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	1 cut(s)	632
HaeIII	GGCC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	2 cut(s)	478, 535
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	430
HpaI	GTTAAC	1 cut(s)	387
Hpy166II	GTNNAC	2 cut(s)	387, 540
Hpy188I	TCNGA	3 cut(s)	301, 407, 498
Hpy188III	TCNNGA	4 cut(s)	107, 200, 545, 581
Hpy8I	GTNNAC	2 cut(s)	387, 540
HpyAV	CCTTC	2 cut(s)	117, 338
HpyCH4III	ACNGT	3 cut(s)	305, 402, 492
HpyCH4V	TGCA	7 cut(s)	139, 155, 218, 308, 367, 448, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 458
HpyF3I	CTNAG	6 cut(s)	54, 129, 189, 233, 250, 546
Hsp92II	CATG	2 cut(s)	478, 535
HspAI	GCGC	1 cut(s)	572
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	9, 642
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	2 cut(s)	142, 282
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	179, 314, 352
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	2 cut(s)	293, 550
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	3 cut(s)	162, 243, 419
MnlI	CCTC	6 cut(s)	23, 26, 223, 259, 271, 528
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	3 cut(s)	386, 417, 422
MunI	CAATTG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	245, 458
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	478, 535
NmuCI	GTSAC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	633
PsiI	TTATAA	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	3 cut(s)	146, 530, 541
RsaNI	GTAC	3 cut(s)	145, 529, 540
SaqAI	TTAA	3 cut(s)	386, 417, 422
SatI	GCNGC	1 cut(s)	632
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	8 cut(s)	60, 94, 215, 241, 270, 336, 434, 539
SfaNI	GCATC	2 cut(s)	142, 282
SfcI	CTRYAG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	3 cut(s)	162, 243, 419
SsiI	CCGC	3 cut(s)	64, 325, 412
SspMI	CTAG	1 cut(s)	117
StyI	CCWWGG	2 cut(s)	169, 268
TaaI	ACNGT	3 cut(s)	305, 402, 492
TaqI	TCGA	3 cut(s)	276, 525, 582
TasI	AATT	3 cut(s)	162, 243, 419
TatI	WGTACW	2 cut(s)	528, 539
Tru1I	TTAA	3 cut(s)	386, 417, 422
Tru9I	TTAA	3 cut(s)	386, 417, 422
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	631
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.