Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002279

Physical Location & Seq

Genomic Coordinates Reverse (-)

34385879 .. 34387628

Gene Structure 1750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTTGTTTTTCATGAAATCTTGTGGTTTTTGCTTGTGTTTGGGACTTTTGTTAATGTTGATTTGATTGCTAGGAGGAGGAATGCGCACTTGGAGAAGTACCCTGATGCGAAAATAATTCCCCTTGGAATTGGTTACACTACCGAGCCCATTCCAGAATATATAACCTCTGCAATGGCAAAGATTGTGAGGCTCCAGGAGACACCTGATGAAATCCCTGAAGGAGGGGCACCACATACTGTGAGTTTGTTGATGCATGACAAACTGGTTGATGCTGGAAAACCAGGTGACAGAGTTGAGGTTACTGGGCCGGGATATATCGGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

109

Amino Acids

12.13

Weight (kDa)

5.46

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_OB	PF17207	61 - 103	6.3e-12	MCM OB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002279)

Species	Orthologous Gene IDs
malus_domestica	MD00G1080500.v1.1 MD16G1285200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801
rosa_laevigata	RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984
rosa_multiflora	Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312410 Rroxscaffold_7G00187620
rosa_rugosa	Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700
rosa_samantha	Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500
rosa_wichuraiana	Rw4G014860 Rw6G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	195, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	150
BciT130I	CCWGG	2 cut(s)	197, 285
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	72
Bme1390I	CCNGG	3 cut(s)	197, 285, 312
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	2 cut(s)	194, 231
BmrFI	CCNGG	3 cut(s)	197, 285, 312
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	3 cut(s)	97, 243, 262
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	270, 310
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	197, 285
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	270, 310
BseRI	GAGGAG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	150, 232
BspANI	GGCC	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	194, 231
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	270, 310
BssECI	CCNNGG	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	197, 285
Bst4CI	ACNGT	1 cut(s)	241
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	197, 285
BstSCI	CCNGG	3 cut(s)	195, 283, 310
BstSLI	GKGCMC	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	310
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	308
CsiI	ACCWGGT	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	14, 257
CviJI	RGCY	4 cut(s)	148, 193, 310, 325
CviKI_1	RGCY	4 cut(s)	148, 193, 310, 325
CviQI	GTAC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	195, 283
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	17, 260
FaiI	YATR	6 cut(s)	15, 162, 164, 237, 258, 318
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	13, 256
FriOI	GRGCYC	1 cut(s)	150
FspAI	RTGCGCAY	1 cut(s)	87
FspBI	CTAG	1 cut(s)	72
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	17, 260
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	299
Hpy188III	TCNNGA	2 cut(s)	14, 155
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	173, 256
Hsp92II	CATG	2 cut(s)	17, 260
HspAI	GCGC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	198
LweI	GCATC	3 cut(s)	97, 243, 262
MabI	ACCWGGT	1 cut(s)	283
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	134, 287, 301
MhlI	GDGCHC	2 cut(s)	150, 232
MluCI	AATT	2 cut(s)	117, 129
MnlI	CCTC	6 cut(s)	69, 72, 178, 183, 218, 292
Mph1103I	ATGCAT	1 cut(s)	258
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	3 cut(s)	197, 285, 312
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	197, 285
NciI	CCSGG	1 cut(s)	312
NlaIII	CATG	2 cut(s)	17, 260
NlaIV	GGNNCC	2 cut(s)	194, 231
NmuCI	GTSAC	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	258
PagI	TCATGA	1 cut(s)	13
PctI	GAATGC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	195, 283
PspGI	CCWGG	2 cut(s)	195, 283
PspN4I	GGNNCC	2 cut(s)	194, 231
PspPI	GGNCC	1 cut(s)	308
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	197, 285, 312
SduI	GDGCHC	2 cut(s)	150, 232
SetI	ASST	4 cut(s)	170, 208, 289, 303
SexAI	ACCWGGT	1 cut(s)	283
SfaNI	GCATC	3 cut(s)	97, 243, 262
Sse9I	AATT	2 cut(s)	117, 129
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	195, 283, 310
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	2 cut(s)	117, 129
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	30, 225
XagI	CCTNNNNNAGG	1 cut(s)	222
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.