No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 284 |
| AfaI | GTAC | 1 cut(s) | 83 |
| AflIII | ACRYGT | 1 cut(s) | 84 |
| AgsI | TTSAA | 2 cut(s) | 227, 329 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 280, 312 |
| AluBI | AGCT | 2 cut(s) | 163, 261 |
| AluI | AGCT | 2 cut(s) | 163, 261 |
| AlwI | GGATC | 1 cut(s) | 284 |
| ApeKI | GCWGC | 2 cut(s) | 47, 201 |
| BbvI | GCAGC | 2 cut(s) | 34, 188 |
| BfmI | CTRYAG | 1 cut(s) | 217 |
| BisI | GCNGC | 2 cut(s) | 48, 202 |
| BlsI | GCNGC | 2 cut(s) | 49, 203 |
| BmiI | GGNNCC | 1 cut(s) | 182 |
| BsaAI | YACGTR | 1 cut(s) | 85 |
| BseXI | GCAGC | 2 cut(s) | 34, 188 |
| Bsp143I | GATC | 1 cut(s) | 276 |
| BspLI | GGNNCC | 1 cut(s) | 182 |
| BspPI | GGATC | 1 cut(s) | 284 |
| BssMI | GATC | 1 cut(s) | 276 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 100 |
| BstBAI | YACGTR | 1 cut(s) | 85 |
| BstKTI | GATC | 1 cut(s) | 279 |
| BstMBI | GATC | 1 cut(s) | 276 |
| BstSFI | CTRYAG | 1 cut(s) | 217 |
| BstV1I | GCAGC | 2 cut(s) | 34, 188 |
| BstX2I | RGATCY | 1 cut(s) | 276 |
| BstYI | RGATCY | 1 cut(s) | 276 |
| Csp6I | GTAC | 1 cut(s) | 82 |
| CviJI | RGCY | 4 cut(s) | 163, 177, 201, 261 |
| CviKI_1 | RGCY | 4 cut(s) | 163, 177, 201, 261 |
| CviQI | GTAC | 1 cut(s) | 82 |
| DpnI | GATC | 1 cut(s) | 278 |
| DpnII | GATC | 1 cut(s) | 276 |
| Eco32I | GATATC | 1 cut(s) | 294 |
| EcoRV | GATATC | 1 cut(s) | 294 |
| FaiI | YATR | 7 cut(s) | 28, 30, 94, 96, 109, 170, 334 |
| Fnu4HI | GCNGC | 2 cut(s) | 48, 202 |
| Fsp4HI | GCNGC | 2 cut(s) | 48, 202 |
| GluI | GCNGC | 2 cut(s) | 48, 202 |
| Hpy188III | TCNNGA | 1 cut(s) | 224 |
| HpyAV | CCTTC | 1 cut(s) | 194 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 100 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 2 cut(s) | 204, 304 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Kzo9I | GATC | 1 cut(s) | 276 |
| LmnI | GCTCC | 1 cut(s) | 283 |
| LpnPI | CCDG | 2 cut(s) | 163, 205 |
| Lsp1109I | GCAGC | 2 cut(s) | 34, 188 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MalI | GATC | 1 cut(s) | 278 |
| MboI | GATC | 1 cut(s) | 276 |
| MflI | RGATCY | 1 cut(s) | 276 |
| MluCI | AATT | 5 cut(s) | 39, 60, 74, 120, 320 |
| MseI | TTAA | 1 cut(s) | 38 |
| MslI | CAYNNNNRTG | 1 cut(s) | 309 |
| NdeII | GATC | 1 cut(s) | 276 |
| NlaIV | GGNNCC | 1 cut(s) | 182 |
| PkrI | GCNGC | 2 cut(s) | 49, 203 |
| Ppu21I | YACGTR | 1 cut(s) | 85 |
| PspN4I | GGNNCC | 1 cut(s) | 182 |
| PsuI | RGATCY | 1 cut(s) | 276 |
| RsaI | GTAC | 1 cut(s) | 83 |
| RsaNI | GTAC | 1 cut(s) | 82 |
| RseI | CAYNNNNRTG | 1 cut(s) | 309 |
| SaqAI | TTAA | 1 cut(s) | 38 |
| SatI | GCNGC | 2 cut(s) | 48, 202 |
| Sau3AI | GATC | 1 cut(s) | 276 |
| SetI | ASST | 3 cut(s) | 87, 165, 263 |
| SfcI | CTRYAG | 1 cut(s) | 217 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 309 |
| Sse9I | AATT | 5 cut(s) | 39, 60, 74, 120, 320 |
| TaaI | ACNGT | 2 cut(s) | 34, 100 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TasI | AATT | 5 cut(s) | 39, 60, 74, 120, 320 |
| Tru1I | TTAA | 1 cut(s) | 38 |
| Tru9I | TTAA | 1 cut(s) | 38 |
| TseI | GCWGC | 2 cut(s) | 47, 201 |
| TspDTI | ATGAA | 2 cut(s) | 144, 157 |