Niemann-Pick C1
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 95 |
| AfaI | GTAC | 2 cut(s) | 232, 342 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 337 |
| AflIII | ACRYGT | 1 cut(s) | 71 |
| AgsI | TTSAA | 2 cut(s) | 62, 89 |
| AluBI | AGCT | 2 cut(s) | 92, 201 |
| AluI | AGCT | 2 cut(s) | 92, 201 |
| AlwI | GGATC | 1 cut(s) | 95 |
| ApeKI | GCWGC | 2 cut(s) | 30, 51 |
| AsuHPI | GGTGA | 1 cut(s) | 184 |
| BbvI | GCAGC | 2 cut(s) | 17, 63 |
| BfmI | CTRYAG | 1 cut(s) | 46 |
| BisI | GCNGC | 2 cut(s) | 31, 52 |
| BlsI | GCNGC | 2 cut(s) | 32, 53 |
| BmcAI | AGTACT | 1 cut(s) | 232 |
| BmiI | GGNNCC | 1 cut(s) | 11 |
| BmsI | GCATC | 1 cut(s) | 292 |
| BpmI | CTGGAG | 1 cut(s) | 112 |
| BsaJI | CCNNGG | 1 cut(s) | 114 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 337 |
| Bse1I | ACTGG | 1 cut(s) | 173 |
| Bse3DI | GCAATG | 1 cut(s) | 108 |
| BseDI | CCNNGG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BseMI | GCAATG | 1 cut(s) | 108 |
| BseNI | ACTGG | 1 cut(s) | 173 |
| BseXI | GCAGC | 2 cut(s) | 17, 63 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 337 |
| BsmI | GAATGC | 1 cut(s) | 168 |
| Bsp143I | GATC | 3 cut(s) | 55, 100, 344 |
| BspLI | GGNNCC | 1 cut(s) | 11 |
| BspPI | GGATC | 1 cut(s) | 95 |
| BsrDI | GCAATG | 1 cut(s) | 108 |
| BsrI | ACTGG | 1 cut(s) | 173 |
| BssECI | CCNNGG | 1 cut(s) | 114 |
| BssMI | GATC | 3 cut(s) | 55, 100, 344 |
| BssT1I | CCWWGG | 1 cut(s) | 114 |
| BstDEI | CTNAG | 1 cut(s) | 336 |
| BstKTI | GATC | 3 cut(s) | 58, 103, 347 |
| BstMBI | GATC | 3 cut(s) | 55, 100, 344 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BstNSI | RCATGY | 1 cut(s) | 75 |
| BstSFI | CTRYAG | 1 cut(s) | 46 |
| BstV1I | GCAGC | 2 cut(s) | 17, 63 |
| BtsIMutI | CAGTG | 1 cut(s) | 166 |
| Csp6I | GTAC | 2 cut(s) | 231, 341 |
| CviAII | CATG | 1 cut(s) | 72 |
| CviJI | RGCY | 6 cut(s) | 6, 30, 92, 172, 184, 201 |
| CviKI_1 | RGCY | 6 cut(s) | 6, 30, 92, 172, 184, 201 |
| CviQI | GTAC | 2 cut(s) | 231, 341 |
| DdeI | CTNAG | 1 cut(s) | 336 |
| DpnI | GATC | 3 cut(s) | 57, 102, 346 |
| DpnII | GATC | 3 cut(s) | 55, 100, 344 |
| Eco130I | CCWWGG | 1 cut(s) | 114 |
| EcoT14I | CCWWGG | 1 cut(s) | 114 |
| ErhI | CCWWGG | 1 cut(s) | 114 |
| FaeI | CATG | 1 cut(s) | 75 |
| FaiI | YATR | 6 cut(s) | 69, 73, 144, 251, 282, 284 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 81, 113 |
| FatI | CATG | 1 cut(s) | 71 |
| Fnu4HI | GCNGC | 2 cut(s) | 31, 52 |
| Fsp4HI | GCNGC | 2 cut(s) | 31, 52 |
| GluI | GCNGC | 2 cut(s) | 31, 52 |
| GsuI | CTGGAG | 1 cut(s) | 112 |
| Hin1II | CATG | 1 cut(s) | 75 |
| HinfI | GANTC | 1 cut(s) | 123 |
| HphI | GGTGA | 1 cut(s) | 184 |
| Hpy188I | TCNGA | 1 cut(s) | 291 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 129 |
| HpyAV | CCTTC | 2 cut(s) | 23, 174 |
| HpyCH4V | TGCA | 3 cut(s) | 33, 166, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 1 cut(s) | 336 |
| Hsp92II | CATG | 1 cut(s) | 75 |
| Kzo9I | GATC | 3 cut(s) | 55, 100, 344 |
| LmnI | GCTCC | 1 cut(s) | 97 |
| LpnPI | CCDG | 5 cut(s) | 34, 142, 154, 251, 290 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 63 |
| LweI | GCATC | 1 cut(s) | 292 |
| MaeIII | GTNAC | 2 cut(s) | 241, 256 |
| MalI | GATC | 3 cut(s) | 57, 102, 346 |
| MboI | GATC | 3 cut(s) | 55, 100, 344 |
| MboII | GAAGA | 1 cut(s) | 309 |
| MfeI | CAATTG | 1 cut(s) | 204 |
| MluCI | AATT | 1 cut(s) | 204 |
| MnlI | CCTC | 5 cut(s) | 113, 139, 202, 318, 338 |
| MseI | TTAA | 3 cut(s) | 77, 218, 349 |
| MunI | CAATTG | 1 cut(s) | 204 |
| Mva1269I | GAATGC | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NdeII | GATC | 3 cut(s) | 55, 100, 344 |
| NlaIII | CATG | 1 cut(s) | 75 |
| NlaIV | GGNNCC | 1 cut(s) | 11 |
| NspI | RCATGY | 1 cut(s) | 75 |
| PciI | ACATGT | 1 cut(s) | 71 |
| PctI | GAATGC | 1 cut(s) | 168 |
| PfeI | GAWTC | 1 cut(s) | 123 |
| PkrI | GCNGC | 2 cut(s) | 32, 53 |
| PscI | ACATGT | 1 cut(s) | 71 |
| PspN4I | GGNNCC | 1 cut(s) | 11 |
| RsaI | GTAC | 2 cut(s) | 232, 342 |
| RsaNI | GTAC | 2 cut(s) | 231, 341 |
| SaqAI | TTAA | 3 cut(s) | 77, 218, 349 |
| SatI | GCNGC | 2 cut(s) | 31, 52 |
| Sau3AI | GATC | 3 cut(s) | 55, 100, 344 |
| ScaI | AGTACT | 1 cut(s) | 232 |
| SetI | ASST | 6 cut(s) | 94, 203, 263, 310, 330, 342 |
| SfaNI | GCATC | 1 cut(s) | 292 |
| SfcI | CTRYAG | 1 cut(s) | 46 |
| Sse9I | AATT | 1 cut(s) | 204 |
| StyI | CCWWGG | 1 cut(s) | 114 |
| TasI | AATT | 1 cut(s) | 204 |
| TatI | WGTACW | 1 cut(s) | 230 |
| TfiI | GAWTC | 1 cut(s) | 123 |
| Tru1I | TTAA | 3 cut(s) | 77, 218, 349 |
| Tru9I | TTAA | 3 cut(s) | 77, 218, 349 |
| TscAI | CASTG | 1 cut(s) | 173 |
| TseI | GCWGC | 2 cut(s) | 30, 51 |
| TspRI | CASTG | 1 cut(s) | 173 |
| XceI | RCATGY | 1 cut(s) | 75 |
| ZrmI | AGTACT | 1 cut(s) | 232 |