Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007139.1

Orthogroup ID

OG0002279

Physical Location & Seq

Genomic Coordinates Forward (+)

1896 .. 4538

Gene Structure 2643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007139.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaaagaagccgaggaagttgtttctccccccattggtctgttctatgttaaaatcagggaacaggtcaagttattgtgcactgttctgttgcatctgttttggcagaggttgtttatggaagctggggtgagctgggtggcttcaacagagttagctggtctcttatgggctccacttgatccaagcactgccttgggaggattctctggaaacaactattatgagtcttctgcatttgtagtcacctacccaattaataatgcagttgatgacgtaggaaatgagaacgggaaggcactggcttgggagaaggcttttattcagttagcaaagatctggagcaaatatgtttataaaaaaactgttgccaatggtgctgtctcggaactgagtctctcattttcagttgaaagctcaattgaggaagagttaataagagagtactgcagatgttataaccataatagtaagttatatggtaatgttcctgtatatatctctgacattgggagatgcacctcaaatctcttctttttacctctcatccaaggtccaaaggtgaagccaaagcaatgttttaaggcaaaaagggtttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

200

Amino Acids

22.45

Weight (kDa)

8.2

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002279)

Species	Orthologous Gene IDs
malus_domestica	MD00G1080500.v1.1 MD16G1285200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801
rosa_laevigata	RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984
rosa_multiflora	Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312410 Rroxscaffold_7G00187620
rosa_rugosa	Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700
rosa_samantha	Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500
rosa_wichuraiana	Rw4G014860 Rw6G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	357, 459
AclWI	GGATC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	147, 413
AluBI	AGCT	4 cut(s)	125, 135, 158, 417
AluI	AGCT	4 cut(s)	125, 135, 158, 417
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	3 cut(s)	167, 388, 401
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	79
AseI	ATTAAT	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	3 cut(s)	142, 238, 574
AvaII	GGWCC	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	167, 388, 401
BfmI	CTRYAG	1 cut(s)	448
BglII	AGATCT	1 cut(s)	336
BmcAI	AGTACT	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	2 cut(s)	103, 506
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	12, 195, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	581
BseDI	CCNNGG	3 cut(s)	12, 195, 550
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	83
BseYI	CCCAGC	2 cut(s)	125, 135
BsiHKAI	GWGCWC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	3 cut(s)	167, 388, 401
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	83, 175
Bsp143I	GATC	2 cut(s)	181, 336
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	452
BspPI	GGATC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	12, 195, 550
BssMI	GATC	2 cut(s)	181, 336
BssT1I	CCWWGG	2 cut(s)	195, 550
Bst4CI	ACNGT	2 cut(s)	85, 367
Bst6I	CTCTTC	2 cut(s)	423, 536
BstDEI	CTNAG	2 cut(s)	392, 600
BstF5I	GGATG	1 cut(s)	546
BstKTI	GATC	2 cut(s)	184, 339
BstMAI	GTCTC	3 cut(s)	167, 388, 401
BstMBI	GATC	2 cut(s)	181, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	81, 189, 299
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	445
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	392, 600
DpnI	GATC	2 cut(s)	183, 338
DpnII	GATC	2 cut(s)	181, 336
Eam1104I	CTCTTC	2 cut(s)	423, 536
EarI	CTCTTC	2 cut(s)	423, 536
Eco130I	CCWWGG	2 cut(s)	195, 550
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	554
EcoT14I	CCWWGG	2 cut(s)	195, 550
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	195, 550
FalI	AAGNNNNNCTT	1 cut(s)	583
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	175
GsaI	CCCAGC	2 cut(s)	129, 139
GsuI	CTGGAG	1 cut(s)	361
HinfI	GANTC	3 cut(s)	204, 227, 394
HphI	GGTGA	3 cut(s)	142, 238, 574
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	388, 505
Hpy188III	TCNNGA	2 cut(s)	210, 340
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	2 cut(s)	289, 307
HpyCH4III	ACNGT	2 cut(s)	85, 367
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	6 cut(s)	81, 94, 236, 266, 450, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	2 cut(s)	392, 600
HpySE526I	ACGT	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	181, 336
LmnI	GCTCC	2 cut(s)	178, 342
LpnPI	CCDG	9 cut(s)	43, 50, 111, 121, 144, 195, 287, 325, 504
LweI	GCATC	2 cut(s)	103, 506
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	183, 338
MboI	GATC	2 cut(s)	181, 336
MboII	GAAGA	3 cut(s)	222, 440, 523
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	83, 175
MluCI	AATT	2 cut(s)	255, 420
MlyI	GAGTC	2 cut(s)	236, 403
MnlI	CCTC	6 cut(s)	7, 102, 194, 418, 532, 552
MseI	TTAA	4 cut(s)	51, 258, 434, 582
MunI	CAATTG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	2 cut(s)	181, 336
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	204
PleI	GAGTC	2 cut(s)	235, 402
PpsI	GAGTC	2 cut(s)	235, 402
PshBI	ATTAAT	1 cut(s)	258
PsiI	TTATAA	2 cut(s)	357, 459
PspFI	CCCAGC	2 cut(s)	125, 135
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
SaqAI	TTAA	4 cut(s)	51, 258, 434, 582
Sau3AI	GATC	2 cut(s)	181, 336
Sau96I	GGNCC	1 cut(s)	554
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	2 cut(s)	236, 403
SduI	GDGCHC	2 cut(s)	83, 175
SfaNI	GCATC	2 cut(s)	103, 506
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	554
Sse9I	AATT	2 cut(s)	255, 420
StyI	CCWWGG	2 cut(s)	195, 550
TaaI	ACNGT	2 cut(s)	85, 367
TaiI	ACGT	1 cut(s)	279
TasI	AATT	2 cut(s)	255, 420
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	4 cut(s)	51, 258, 434, 582
Tru9I	TTAA	4 cut(s)	51, 258, 434, 582
TscAI	CASTG	3 cut(s)	88, 196, 306
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	88, 196, 306
VneI	GTGCAC	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.