Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002279

Physical Location & Seq

Genomic Coordinates Reverse (-)

14106498 .. 14108737

Gene Structure 2240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0158200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGACGAACTGCCAGGCTCGTTGGGCACCAGTGCCAGCTTGGCTCTGCGTTTCGGCCAGACCATATTCTCCACCGCATCTCTTCTGTTTATGTGTTTGGACGTCGAGTTCTACAGCTACACAGCTTTCTGCTATTTGGTAACAGTAATGGGTTTGGTAGTTCCATGGGGCATGACTTTAGTGATAGTGGATGCCTACTCTGTTTTTGTTAGATGCTTACCTCGTCAACCAAGAATAATTATAATCCTCATTGTAGGAGACTTGGCTTTATCTTATCTCTCACTAGCTGCAGCCTGCTCAACAGCTAGTACCACAATGCTCCTACATGATGCTGGTCGATCCTTATGCCCAGCAAAATTATGCACTAGATATCAGTTGTCTGCTGCAATGGCTTTTCTTTCTTGGTTTCTCTCTATGGGTTCTTGTCTATTCAATCTTTGGCTTCTTCCTTCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005886 GO:0005887 GO:0006082 GO:0006464 GO:0006486 GO:0006629 GO:0006807 GO:0006810 GO:0006869 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008289 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010876 GO:0012505 GO:0015485 GO:0015850 GO:0015918 GO:0016020 GO:0016021 GO:0019538 GO:0019752 GO:0030301 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0032787 GO:0032934 GO:0033036 GO:0034645 GO:0036094 GO:0036211 GO:0042592 GO:0042632 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048471 GO:0048878 GO:0051179 GO:0051234 GO:0055088 GO:0055092 GO:0065007 GO:0065008 GO:0070085 GO:0071702 GO:0071704 GO:0071944 GO:0097159 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko04142 ko04979 map04142 map04979

Pfam Domains

Protein Families

NPC1_N Patched

Protein Analysis

152

Amino Acids

16.6

Weight (kDa)

6.5

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	8 - 137	6.5e-25	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002279)

Species	Orthologous Gene IDs
malus_domestica	MD00G1080500.v1.1 MD16G1285200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801
rosa_laevigata	RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984
rosa_multiflora	Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312410 Rroxscaffold_7G00187620
rosa_rugosa	Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700
rosa_samantha	Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500
rosa_wichuraiana	Rw4G014860 Rw6G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	242, 457
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	13
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	5 cut(s)	39, 117, 125, 287, 305
AluI	AGCT	5 cut(s)	39, 117, 125, 287, 305
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	3 cut(s)	287, 290, 383
BaeGI	GKGCMC	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	274, 302, 370
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	3 cut(s)	284, 306, 366
BfmI	CTRYAG	2 cut(s)	112, 288
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	288, 291, 384
BlsI	GCNGC	3 cut(s)	289, 292, 385
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	4 cut(s)	86, 181, 203, 319
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	274, 302, 370
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	338
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	338
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	37, 295
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 41, 389
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	112, 288
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	274, 302, 370
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	37, 295
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	165, 172, 326
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	168, 175, 329
FatI	CATG	3 cut(s)	164, 171, 325
Fnu4HI	GCNGC	3 cut(s)	288, 291, 384
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	288, 291, 384
FspBI	CTAG	3 cut(s)	284, 306, 366
GluI	GCNGC	3 cut(s)	288, 291, 384
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	168, 175, 329
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	290, 363, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 41, 389
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	168, 175, 329
Kzo9I	GATC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	27, 43, 49, 71, 307, 318, 363
Lsp1109I	GCAGC	3 cut(s)	274, 302, 370
LweI	GCATC	4 cut(s)	86, 181, 203, 319
MaeI	CTAG	3 cut(s)	284, 306, 366
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	2 cut(s)	74, 437
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	237, 356
MnlI	CCTC	2 cut(s)	231, 257
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	24, 41, 389
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	338
NlaIII	CATG	3 cut(s)	168, 175, 329
NlaIV	GGNNCC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	289, 292, 385
PsiI	TTATAA	2 cut(s)	242, 457
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SatI	GCNGC	3 cut(s)	288, 291, 384
Sau3AI	GATC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	7 cut(s)	41, 105, 119, 127, 223, 289, 307
SfaNI	GCATC	4 cut(s)	86, 181, 203, 319
SfcI	CTRYAG	2 cut(s)	112, 288
Sse9I	AATT	2 cut(s)	237, 356
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	3 cut(s)	284, 306, 366
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	105, 337
TasI	AATT	2 cut(s)	237, 356
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	3 cut(s)	287, 290, 383
TspRI	CASTG	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	3 cut(s)	284, 306, 366
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.