Niemann-Pick C1
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 326 |
| AcuI | CTGAAG | 1 cut(s) | 318 |
| AflIII | ACRYGT | 1 cut(s) | 369 |
| AgsI | TTSAA | 4 cut(s) | 142, 264, 285, 338 |
| AjiI | CACGTC | 1 cut(s) | 372 |
| ApeKI | GCWGC | 2 cut(s) | 110, 131 |
| ApoI | RAATTY | 1 cut(s) | 326 |
| AseI | ATTAAT | 1 cut(s) | 177 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| BbsI | GAAGAC | 1 cut(s) | 345 |
| BbvI | GCAGC | 2 cut(s) | 97, 143 |
| BceAI | ACGGC | 1 cut(s) | 358 |
| BfmI | CTRYAG | 1 cut(s) | 126 |
| BisI | GCNGC | 2 cut(s) | 111, 132 |
| BlsI | GCNGC | 2 cut(s) | 112, 133 |
| BmgBI | CACGTC | 1 cut(s) | 372 |
| BmiI | GGNNCC | 1 cut(s) | 91 |
| BpiI | GAAGAC | 1 cut(s) | 345 |
| Bse1I | ACTGG | 1 cut(s) | 225 |
| BseNI | ACTGG | 1 cut(s) | 225 |
| BseXI | GCAGC | 2 cut(s) | 97, 143 |
| BsmI | GAATGC | 2 cut(s) | 155, 220 |
| Bsp143I | GATC | 2 cut(s) | 30, 135 |
| BspLI | GGNNCC | 1 cut(s) | 91 |
| BsrI | ACTGG | 1 cut(s) | 225 |
| BssMI | GATC | 2 cut(s) | 30, 135 |
| BstKTI | GATC | 2 cut(s) | 33, 138 |
| BstMBI | GATC | 2 cut(s) | 30, 135 |
| BstSFI | CTRYAG | 1 cut(s) | 126 |
| BstV1I | GCAGC | 2 cut(s) | 97, 143 |
| BstV2I | GAAGAC | 1 cut(s) | 345 |
| BtrI | CACGTC | 1 cut(s) | 372 |
| BtsIMutI | CAGTG | 1 cut(s) | 218 |
| CseI | GACGC | 1 cut(s) | 291 |
| CviAII | CATG | 1 cut(s) | 81 |
| CviJI | RGCY | 4 cut(s) | 86, 110, 224, 236 |
| CviKI_1 | RGCY | 4 cut(s) | 86, 110, 224, 236 |
| DpnI | GATC | 2 cut(s) | 32, 137 |
| DpnII | GATC | 2 cut(s) | 30, 135 |
| Eco57I | CTGAAG | 1 cut(s) | 318 |
| FaeI | CATG | 1 cut(s) | 84 |
| FaiI | YATR | 4 cut(s) | 82, 161, 290, 315 |
| FatI | CATG | 1 cut(s) | 80 |
| Fnu4HI | GCNGC | 2 cut(s) | 111, 132 |
| Fsp4HI | GCNGC | 2 cut(s) | 111, 132 |
| GluI | GCNGC | 2 cut(s) | 111, 132 |
| HgaI | GACGC | 1 cut(s) | 291 |
| Hin1II | CATG | 1 cut(s) | 84 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy188I | TCNGA | 2 cut(s) | 54, 298 |
| Hpy188III | TCNNGA | 1 cut(s) | 139 |
| HpyAV | CCTTC | 4 cut(s) | 83, 103, 226, 266 |
| HpyCH4IV | ACGT | 1 cut(s) | 371 |
| HpyCH4V | TGCA | 4 cut(s) | 113, 155, 185, 218 |
| HpySE526I | ACGT | 1 cut(s) | 371 |
| Hsp92II | CATG | 1 cut(s) | 84 |
| Kzo9I | GATC | 2 cut(s) | 30, 135 |
| LpnPI | CCDG | 4 cut(s) | 30, 72, 206, 340 |
| Lsp1109I | GCAGC | 2 cut(s) | 97, 143 |
| MaeII | ACGT | 1 cut(s) | 371 |
| MaeIII | GTNAC | 1 cut(s) | 163 |
| MalI | GATC | 2 cut(s) | 32, 137 |
| MboI | GATC | 2 cut(s) | 30, 135 |
| MboII | GAAGA | 2 cut(s) | 273, 350 |
| MfeI | CAATTG | 2 cut(s) | 264, 333 |
| MluCI | AATT | 5 cut(s) | 174, 264, 277, 326, 333 |
| MseI | TTAA | 1 cut(s) | 177 |
| MunI | CAATTG | 2 cut(s) | 264, 333 |
| Mva1269I | GAATGC | 2 cut(s) | 155, 220 |
| NdeII | GATC | 2 cut(s) | 30, 135 |
| NlaIII | CATG | 1 cut(s) | 84 |
| NlaIV | GGNNCC | 1 cut(s) | 91 |
| NmuCI | GTSAC | 1 cut(s) | 163 |
| PctI | GAATGC | 2 cut(s) | 155, 220 |
| PkrI | GCNGC | 2 cut(s) | 112, 133 |
| PshBI | ATTAAT | 1 cut(s) | 177 |
| PspN4I | GGNNCC | 1 cut(s) | 91 |
| SaqAI | TTAA | 1 cut(s) | 177 |
| SatI | GCNGC | 2 cut(s) | 111, 132 |
| Sau3AI | GATC | 2 cut(s) | 30, 135 |
| SetI | ASST | 3 cut(s) | 19, 170, 374 |
| SfcI | CTRYAG | 1 cut(s) | 126 |
| Sse9I | AATT | 5 cut(s) | 174, 264, 277, 326, 333 |
| TaiI | ACGT | 1 cut(s) | 374 |
| TasI | AATT | 5 cut(s) | 174, 264, 277, 326, 333 |
| Tru1I | TTAA | 1 cut(s) | 177 |
| Tru9I | TTAA | 1 cut(s) | 177 |
| TscAI | CASTG | 1 cut(s) | 225 |
| TseFI | GTSAC | 1 cut(s) | 163 |
| TseI | GCWGC | 2 cut(s) | 110, 131 |
| Tsp45I | GTSAC | 1 cut(s) | 163 |
| TspDTI | ATGAA | 3 cut(s) | 69, 71, 148 |
| TspRI | CASTG | 1 cut(s) | 225 |
| VspI | ATTAAT | 1 cut(s) | 177 |
| XapI | RAATTY | 1 cut(s) | 326 |