Rh3CG050700

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002279
Physical Location & Seq
Forward (+)
3440702 .. 3444133
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG050700.1

Sequence Viewer

Length: 387 bp
ATGGAGAATGTGATGAACAAGCTCCGGAATTTGGATGCGTACCCCAAAATCAATGAAGATTTCTACATTCGTACCCTCTCCTGCGGCGGTGCATTATTGGACGAACATATAGCAGAACAAACTTTTAGCAATAAAGGATTGCAAGCTATTGGTCAACCACTAAAATGTTTCTTGATATTGTTAAGGTTTCTGAGTGTGTTTATCATTCCGTTCATGAAAACTATTCAGCAGGTCCATGAAGGTGCTTTTGGTTTTGATCAGTCACTTCTTACTTGGAATCTCTGGGACTATATCAGTAACAAGCATGTCTGTAGTTGGTCATCAAAGAGAGGTAGTGCTTTAAAGCATCCAATCAACCTTGATGAGCAGCTTCTGTTTCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

128

Amino Acids

14.75

Weight (kDa)

6.89

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 2 cut(s) 84, 87
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 2 cut(s) 41, 73
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 380
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 3 cut(s) 22, 146, 370
AluI AGCT 3 cut(s) 22, 146, 370
AlwNI CAGNNNCTG 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 232
AvaII GGWCC 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BbvI GCAGC 1 cut(s) 379
BclI TGATCA 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 85, 368
BlsI GCNGC 2 cut(s) 86, 369
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmsI GCATC 2 cut(s) 25, 355
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 24
BseGI GGATG 2 cut(s) 40, 346
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 299
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 2 cut(s) 84, 87
BspCNI CTCAG 1 cut(s) 183
BspEI TCCGGA 1 cut(s) 24
BspHI TCATGA 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 220
BssMI GATC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 40, 346
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 40, 346
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 373
CciI TCATGA 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 40, 72
CviAII CATG 3 cut(s) 214, 236, 305
CviJI RGCY 3 cut(s) 22, 146, 370
CviKI_1 RGCY 3 cut(s) 22, 146, 370
CviQI GTAC 2 cut(s) 40, 72
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DraI TTTAAA 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 232
FaeI CATG 3 cut(s) 217, 239, 308
FaiI YATR 6 cut(s) 108, 110, 215, 237, 291, 306
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 213, 235, 304
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 85, 368
FokI GGATG 2 cut(s) 47, 333
Fsp4HI GCNGC 2 cut(s) 85, 368
GluI GCNGC 2 cut(s) 85, 368
HapII CCGG 1 cut(s) 25
Hin1II CATG 3 cut(s) 217, 239, 308
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HinfI GANTC 1 cut(s) 277
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 4 cut(s) 25, 172, 214, 384
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 92, 142
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 3 cut(s) 217, 239, 308
Kpn2I TCCGGA 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 4 cut(s) 38, 94, 215, 268
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 25, 355
MaeIII GTNAC 2 cut(s) 261, 296
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 68
MluCI AATT 1 cut(s) 28
MnlI CCTC 2 cut(s) 86, 323
MroI TCCGGA 1 cut(s) 24
MseI TTAA 2 cut(s) 182, 341
MslI CAYNNNNRTG 2 cut(s) 163, 240
MspI CCGG 1 cut(s) 25
NdeII GATC 1 cut(s) 256
NlaIII CATG 3 cut(s) 217, 239, 308
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 1 cut(s) 308
PagI TCATGA 1 cut(s) 213
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 86, 369
PspPI GGNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 373
RsaI GTAC 2 cut(s) 41, 73
RsaNI GTAC 2 cut(s) 40, 72
RseI CAYNNNNRTG 2 cut(s) 163, 240
SaqAI TTAA 2 cut(s) 182, 341
SatI GCNGC 2 cut(s) 85, 368
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 232
SetI ASST 8 cut(s) 24, 148, 188, 234, 244, 334, 360, 372
SfaNI GCATC 2 cut(s) 25, 355
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 163, 240
Sse9I AATT 1 cut(s) 28
SsiI CCGC 2 cut(s) 84, 87
TasI AATT 1 cut(s) 28
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 2 cut(s) 182, 341
Tru9I TTAA 2 cut(s) 182, 341
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 5 cut(s) 29, 69, 202, 230, 252
TspGWI ACGGA 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.