Niemann-Pick C1
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 328 |
| AflII | CTTAAG | 1 cut(s) | 149 |
| AgsI | TTSAA | 2 cut(s) | 31, 140 |
| AluBI | AGCT | 5 cut(s) | 64, 79, 192, 377, 402 |
| AluI | AGCT | 5 cut(s) | 64, 79, 192, 377, 402 |
| Alw26I | GTCTC | 1 cut(s) | 287 |
| AlwI | GGATC | 1 cut(s) | 328 |
| AoxI | GGCC | 1 cut(s) | 51 |
| AseI | ATTAAT | 1 cut(s) | 8 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| BcoDI | GTCTC | 1 cut(s) | 287 |
| BfaI | CTAG | 3 cut(s) | 278, 378, 399 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BfrI | CTTAAG | 1 cut(s) | 149 |
| BmsI | GCATC | 1 cut(s) | 160 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BpmI | CTGGAG | 1 cut(s) | 309 |
| BsaI | GGTCTC | 1 cut(s) | 287 |
| Bse1I | ACTGG | 1 cut(s) | 418 |
| BseGI | GGATG | 2 cut(s) | 79, 382 |
| BseNI | ACTGG | 1 cut(s) | 418 |
| BseRI | GAGGAG | 1 cut(s) | 228 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BsmAI | GTCTC | 1 cut(s) | 287 |
| BsnI | GGCC | 1 cut(s) | 53 |
| Bso31I | GGTCTC | 1 cut(s) | 287 |
| Bsp143I | GATC | 1 cut(s) | 320 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspPI | GGATC | 1 cut(s) | 328 |
| BspTI | CTTAAG | 1 cut(s) | 149 |
| BspTNI | GGTCTC | 1 cut(s) | 287 |
| BsrI | ACTGG | 1 cut(s) | 418 |
| BssMI | GATC | 1 cut(s) | 320 |
| BstAFI | CTTAAG | 1 cut(s) | 149 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 91 |
| BstC8I | GCNNGC | 1 cut(s) | 66 |
| BstF5I | GGATG | 2 cut(s) | 79, 382 |
| BstKTI | GATC | 1 cut(s) | 323 |
| BstMAI | GTCTC | 1 cut(s) | 287 |
| BstMBI | GATC | 1 cut(s) | 320 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 91 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BtsCI | GGATG | 2 cut(s) | 79, 382 |
| BtsI | GCAGTG | 1 cut(s) | 42 |
| BtsIMutI | CAGTG | 4 cut(s) | 42, 330, 343, 425 |
| Cac8I | GCNNGC | 1 cut(s) | 66 |
| CviAII | CATG | 3 cut(s) | 42, 304, 444 |
| CviJI | RGCY | 6 cut(s) | 53, 64, 79, 192, 377, 402 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 64, 79, 192, 377, 402 |
| DpnI | GATC | 1 cut(s) | 322 |
| DpnII | GATC | 1 cut(s) | 320 |
| DraI | TTTAAA | 1 cut(s) | 100 |
| Eco147I | AGGCCT | 1 cut(s) | 53 |
| Eco31I | GGTCTC | 1 cut(s) | 287 |
| FaeI | CATG | 3 cut(s) | 45, 307, 447 |
| FaiI | YATR | 9 cut(s) | 43, 213, 305, 371, 425, 427, 429, 431, 445 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 132, 164 |
| FatI | CATG | 3 cut(s) | 41, 303, 443 |
| FokI | GGATG | 2 cut(s) | 86, 369 |
| FspBI | CTAG | 3 cut(s) | 278, 378, 399 |
| GsuI | CTGGAG | 1 cut(s) | 309 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| Hin1II | CATG | 3 cut(s) | 45, 307, 447 |
| HinfI | GANTC | 1 cut(s) | 233 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 1 cut(s) | 127 |
| Hpy188III | TCNNGA | 1 cut(s) | 288 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4V | TGCA | 2 cut(s) | 85, 94 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 91 |
| Hsp92II | CATG | 3 cut(s) | 45, 307, 447 |
| Kzo9I | GATC | 1 cut(s) | 320 |
| LpnPI | CCDG | 4 cut(s) | 50, 273, 422, 431 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 3 cut(s) | 278, 378, 399 |
| MaeIII | GTNAC | 1 cut(s) | 230 |
| MalI | GATC | 1 cut(s) | 322 |
| MboI | GATC | 1 cut(s) | 320 |
| MboII | GAAGA | 3 cut(s) | 152, 155, 240 |
| MluCI | AATT | 3 cut(s) | 26, 95, 363 |
| MlyI | GAGTC | 1 cut(s) | 227 |
| MnlI | CCTC | 4 cut(s) | 9, 249, 422, 444 |
| MseI | TTAA | 5 cut(s) | 8, 99, 107, 150, 351 |
| MspCI | CTTAAG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 91 |
| NdeII | GATC | 1 cut(s) | 320 |
| NlaIII | CATG | 3 cut(s) | 45, 307, 447 |
| NmuCI | GTSAC | 1 cut(s) | 230 |
| PceI | AGGCCT | 1 cut(s) | 53 |
| PleI | GAGTC | 1 cut(s) | 227 |
| PpsI | GAGTC | 1 cut(s) | 227 |
| PshBI | ATTAAT | 1 cut(s) | 8 |
| SaqAI | TTAA | 5 cut(s) | 8, 99, 107, 150, 351 |
| Sau3AI | GATC | 1 cut(s) | 320 |
| SchI | GAGTC | 1 cut(s) | 227 |
| SetI | ASST | 8 cut(s) | 66, 81, 194, 273, 283, 379, 404, 436 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| Sse9I | AATT | 3 cut(s) | 26, 95, 363 |
| SseBI | AGGCCT | 1 cut(s) | 53 |
| SspI | AATATT | 1 cut(s) | 183 |
| SspMI | CTAG | 3 cut(s) | 278, 378, 399 |
| StuI | AGGCCT | 1 cut(s) | 53 |
| TaqI | TCGA | 1 cut(s) | 414 |
| TasI | AATT | 3 cut(s) | 26, 95, 363 |
| Tru1I | TTAA | 5 cut(s) | 8, 99, 107, 150, 351 |
| Tru9I | TTAA | 5 cut(s) | 8, 99, 107, 150, 351 |
| TscAI | CASTG | 4 cut(s) | 42, 330, 343, 425 |
| TseFI | GTSAC | 1 cut(s) | 230 |
| Tsp45I | GTSAC | 1 cut(s) | 230 |
| TspDTI | ATGAA | 2 cut(s) | 38, 252 |
| TspGWI | ACGGA | 1 cut(s) | 301 |
| TspRI | CASTG | 4 cut(s) | 42, 330, 343, 425 |
| Vha464I | CTTAAG | 1 cut(s) | 149 |
| VspI | ATTAAT | 1 cut(s) | 8 |
| XspI | CTAG | 3 cut(s) | 278, 378, 399 |