Rh5CG365700

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002279
Physical Location & Seq
Forward (+)
44370895 .. 44481497
110603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG365700.1

Sequence Viewer

Length: 876 bp
ATGAAATTGGTTGATCTCAATGTTCCTTTGGATGACGACTGTAAGATCACCGATGACACTAGAGTCCGAGCAGCTGTCCCCACCATCAAGTACTTGCTCGGAAATGGTGCCAGAGTCATCCTCGCTTCCCACTTGGGACGTCCCAAGGGTGTCACTCCCAAGTACAGTTTGAAGCCTCTTGTGCCAAGACTGTCTGAACTTCTTGGCATTCAGGCAGACATTTATATCCTGTTGAAAAATGGGAAAAAGAATAAAAAGCAAAAAGTAGAAAAGCTGGCGGCTTCACTTCCTGATGGTGGTGTCCTTCTTCTTGAAAATGTGAGGTTTTACAAAGAGGAGGAGAAGAACGATCCTGAGCATGCAAAGAAGCTCGCCTCTGTAGCTGATCTTTTTGTCAATGATGCATTCGGAACTGCACATAGAACCCATGCTTCAACTGAGGGTGTAACAAAATTCTTAAGGCCATCTGTAGCTGGTTTTCTTTTGCAGAAGGTGGGCGTTGGAGAACAATGGAAGGGCTTTTTGGAGGGCAACGAAACTATAGGGTTCATATTGAATTTGAAAGCAAGATTGAGTATTGGAGTCTTTGATAACCGTTATGATCTTTCCAAAACAAGATCAGCATTTTTAATAACTTATCATGTAAAAAATGCTATTAATAAAGAGGGGAATGAAACTGAAAGAGTAGTGGCATGGGAGAAGGCCTTTCTTCAGTTGGCAAAGCCCCAATCGGCTGCAACGATCCCGAGTTCACCTATCTCTTCAAGTATTCATTCTCCTTGGCCTTGCTGCTGCACCTTCCATCTTCATCACTTGTACTTGGAACTTCACATTTACTCCTTCCTCTTCAGTGTTGTTTCTTCTGGAAGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

291

Amino Acids

32.26

Weight (kDa)

9.19

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 4 - 164 2.2e-57 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AatII GACGTC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 1 cut(s) 278
AclWI GGATC 2 cut(s) 344, 736
AcsI RAATTY 2 cut(s) 452, 556
AcuI CTGAAG 2 cut(s) 695, 832
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 3 cut(s) 92, 164, 818
AfiI CCNNNNNNNGG 1 cut(s) 296
AflII CTTAAG 1 cut(s) 457
AgsI TTSAA 7 cut(s) 172, 235, 314, 435, 556, 562, 765
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 5 cut(s) 74, 274, 370, 383, 473
AluI AGCT 5 cut(s) 74, 274, 370, 383, 473
AlwI GGATC 2 cut(s) 344, 736
Ama87I CYCGRG 1 cut(s) 745
AoxI GGCC 3 cut(s) 461, 702, 782
ApeKI GCWGC 4 cut(s) 71, 734, 789, 792
ApoI RAATTY 2 cut(s) 452, 556
AseI ATTAAT 1 cut(s) 657
AsuHPI GGTGA 2 cut(s) 40, 744
AvaI CYCGRG 1 cut(s) 745
BanI GGYRCC 1 cut(s) 107
BbvI GCAGC 4 cut(s) 83, 721, 776, 779
BccI CCATC 4 cut(s) 92, 287, 472, 810
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 3 cut(s) 378, 468, 540
BfrI CTTAAG 1 cut(s) 457
BisI GCNGC 5 cut(s) 72, 279, 735, 790, 793
BlsI GCNGC 5 cut(s) 73, 280, 736, 791, 794
BmcAI AGTACT 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 745
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 391
BplI GAGNNNNNCTC 2 cut(s) 105, 137
Bpu10I CCTNAGC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 144, 779
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 144, 779
BseGI GGATG 2 cut(s) 37, 117
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 345, 429
BseRI GAGGAG 2 cut(s) 350, 353
BseXI GCAGC 4 cut(s) 83, 721, 776, 779
BsgI GTGCAG 2 cut(s) 399, 778
BshFI GGCC 3 cut(s) 463, 704, 784
BshNI GGYRCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 745
BslFI GGGAC 3 cut(s) 62, 126, 150
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 3 cut(s) 62, 126, 150
BsmI GAATGC 2 cut(s) 207, 404
BsnI GGCC 3 cut(s) 463, 704, 784
BsoBI CYCGRG 1 cut(s) 745
Bsp143I GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
BspACI CCGC 1 cut(s) 278
BspANI GGCC 3 cut(s) 463, 704, 784
BspCNI CTCAG 2 cut(s) 346, 430
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 2 cut(s) 344, 736
BspT107I GGYRCC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 144, 779
BssMI GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
BssNI GRCGYC 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 144, 779
Bst4CI ACNGT 4 cut(s) 41, 167, 192, 596
Bst6I CTCTTC 2 cut(s) 766, 851
BstACI GRCGYC 1 cut(s) 139
BstAFI CTTAAG 1 cut(s) 457
BstC8I GCNNGC 3 cut(s) 276, 360, 372
BstDEI CTNAG 2 cut(s) 354, 438
BstF5I GGATG 2 cut(s) 37, 117
BstKTI GATC 7 cut(s) 16, 48, 352, 388, 604, 620, 744
BstMBI GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
BstMWI GCNNNNNNNGC 2 cut(s) 181, 380
BstNSI RCATGY 1 cut(s) 362
BstSFI CTRYAG 3 cut(s) 378, 468, 540
BstV1I GCAGC 4 cut(s) 83, 721, 776, 779
BsuRI GGCC 3 cut(s) 463, 704, 784
BtsCI GGATG 2 cut(s) 37, 117
BtsIMutI CAGTG 1 cut(s) 856
Cac8I GCNNGC 3 cut(s) 276, 360, 372
Csp6I GTAC 3 cut(s) 91, 163, 817
CviAII CATG 4 cut(s) 359, 428, 641, 693
CviQI GTAC 3 cut(s) 91, 163, 817
DdeI CTNAG 2 cut(s) 354, 438
DpnI GATC 7 cut(s) 15, 47, 351, 387, 603, 619, 743
DpnII GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 2 cut(s) 766, 851
EarI CTCTTC 2 cut(s) 766, 851
Eco130I CCWWGG 2 cut(s) 144, 779
Eco147I AGGCCT 1 cut(s) 704
Eco57I CTGAAG 2 cut(s) 695, 832
Eco88I CYCGRG 1 cut(s) 745
EcoT14I CCWWGG 2 cut(s) 144, 779
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 2 cut(s) 144, 779
FaeI CATG 4 cut(s) 362, 431, 644, 696
FaiI YATR 9 cut(s) 225, 360, 420, 429, 542, 551, 600, 642, 694
FaqI GGGAC 3 cut(s) 62, 126, 150
FatI CATG 4 cut(s) 358, 427, 640, 692
Fnu4HI GCNGC 5 cut(s) 72, 279, 735, 790, 793
FokI GGATG 2 cut(s) 44, 104
Fsp4HI GCNGC 5 cut(s) 72, 279, 735, 790, 793
FspBI CTAG 1 cut(s) 60
GluI GCNGC 5 cut(s) 72, 279, 735, 790, 793
HaeIII GGCC 3 cut(s) 463, 704, 784
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 4 cut(s) 362, 431, 644, 696
HinfI GANTC 3 cut(s) 63, 114, 582
HphI GGTGA 2 cut(s) 40, 744
Hpy166II GTNNAC 1 cut(s) 752
Hpy188I TCNGA 4 cut(s) 68, 101, 196, 410
Hpy188III TCNNGA 5 cut(s) 290, 311, 353, 745, 864
Hpy8I GTNNAC 1 cut(s) 752
HpyAV CCTTC 6 cut(s) 314, 484, 508, 694, 808, 850
HpyCH4III ACNGT 4 cut(s) 41, 167, 192, 596
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 6 cut(s) 362, 404, 416, 487, 737, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 380
HpyF3I CTNAG 2 cut(s) 354, 438
HpySE526I ACGT 1 cut(s) 139
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 4 cut(s) 362, 431, 644, 696
Kzo9I GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
LpnPI CCDG 8 cut(s) 124, 197, 242, 260, 303, 366, 459, 849
Lsp1109I GCAGC 4 cut(s) 83, 721, 776, 779
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 2 cut(s) 151, 445
MalI GATC 7 cut(s) 15, 47, 351, 387, 603, 619, 743
MboI GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
MboII GAAGA 7 cut(s) 299, 355, 701, 753, 797, 838, 852
MluCI AATT 3 cut(s) 5, 452, 556
MlyI GAGTC 3 cut(s) 72, 123, 591
MmeI TCCRAC 1 cut(s) 481
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 3 cut(s) 458, 629, 657
MspA1I CMGCKG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 457
Mva1269I GAATGC 2 cut(s) 207, 404
MwoI GCNNNNNNNGC 2 cut(s) 181, 380
NdeII GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
NlaIII CATG 4 cut(s) 362, 431, 644, 696
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PceI AGGCCT 1 cut(s) 704
PcsI WCGNNNNNNNCGW 1 cut(s) 737
PctI GAATGC 2 cut(s) 207, 404
PkrI GCNGC 5 cut(s) 73, 280, 736, 791, 794
PleI GAGTC 3 cut(s) 71, 122, 590
PpsI GAGTC 3 cut(s) 71, 122, 590
PshBI ATTAAT 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 3 cut(s) 92, 164, 818
RsaNI GTAC 3 cut(s) 91, 163, 817
SaqAI TTAA 3 cut(s) 458, 629, 657
SatI GCNGC 5 cut(s) 72, 279, 735, 790, 793
Sau3AI GATC 7 cut(s) 13, 45, 349, 385, 601, 617, 741
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 3 cut(s) 72, 123, 591
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 3 cut(s) 378, 468, 540
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SphI GCATGC 1 cut(s) 362
Sse9I AATT 3 cut(s) 5, 452, 556
SseBI AGGCCT 1 cut(s) 704
SsiI CCGC 1 cut(s) 278
SspMI CTAG 1 cut(s) 60
StuI AGGCCT 1 cut(s) 704
StyI CCWWGG 2 cut(s) 144, 779
TaaI ACNGT 4 cut(s) 41, 167, 192, 596
TaiI ACGT 1 cut(s) 142
TasI AATT 3 cut(s) 5, 452, 556
TatI WGTACW 3 cut(s) 90, 162, 816
TauI GCSGC 1 cut(s) 281
Tru1I TTAA 3 cut(s) 458, 629, 657
Tru9I TTAA 3 cut(s) 458, 629, 657
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 4 cut(s) 71, 734, 789, 792
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 5 cut(s) 17, 538, 687, 761, 797
TspRI CASTG 1 cut(s) 856
Vha464I CTTAAG 1 cut(s) 457
VspI ATTAAT 1 cut(s) 657
XapI RAATTY 2 cut(s) 452, 556
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 60
ZraI GACGTC 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.