Patched family
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1080500.v1.1 MD16G1285200.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0175261 RchiOBHm_Chr6g0280801 |
| rosa_laevigata | RLG00000013082 RLG00000019605 RLG00000033344 RLG00000034484 RLG00000036984 |
| rosa_multiflora | Rmu_sc0000893.1_g000002 Rmu_sc0002494.1_g000006 Rmu_sc0007139.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00312410 Rroxscaffold_7G00187620 |
| rosa_rugosa | Rorug01G0060900 Rorug02G0158200 Rorug02G0250000 Rorug06G0134700 |
| rosa_samantha | Rh1AG184800 Rh1AG199900 Rh1AG262300 Rh1BG097700 Rh1BG103100 Rh2CG636900 Rh2DG687600 Rh3CG050700 Rh3DG112000 Rh4CG020800 Rh4CG194300 Rh4DG079900 Rh5AG202600 Rh5BG321300 Rh5CG365700 Rh6AG170000 Rh6CG250600 Rh6DG242200 Rh6DG280400 Rh7AG279500 Rh7CG298700 Rh7CG343600 Rh7DG079500 |
| rosa_wichuraiana | Rw4G014860 Rw6G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 157 |
| AcsI | RAATTY | 1 cut(s) | 278 |
| AflII | CTTAAG | 1 cut(s) | 62 |
| AgsI | TTSAA | 1 cut(s) | 53 |
| AluBI | AGCT | 3 cut(s) | 61, 206, 231 |
| AluI | AGCT | 3 cut(s) | 61, 206, 231 |
| Alw26I | GTCTC | 1 cut(s) | 116 |
| AlwI | GGATC | 1 cut(s) | 157 |
| ApeKI | GCWGC | 1 cut(s) | 334 |
| ApoI | RAATTY | 1 cut(s) | 278 |
| BbvI | GCAGC | 1 cut(s) | 321 |
| BccI | CCATC | 1 cut(s) | 305 |
| BcoDI | GTCTC | 1 cut(s) | 116 |
| BfaI | CTAG | 3 cut(s) | 107, 207, 228 |
| BfmI | CTRYAG | 1 cut(s) | 78 |
| BfrI | CTTAAG | 1 cut(s) | 62 |
| BisI | GCNGC | 1 cut(s) | 335 |
| BlsI | GCNGC | 1 cut(s) | 336 |
| BmsI | GCATC | 2 cut(s) | 73, 334 |
| BpmI | CTGGAG | 1 cut(s) | 138 |
| BsaBI | GATNNNNATC | 1 cut(s) | 296 |
| BsaI | GGTCTC | 1 cut(s) | 116 |
| Bse8I | GATNNNNATC | 1 cut(s) | 296 |
| BseGI | GGATG | 2 cut(s) | 211, 262 |
| BseJI | GATNNNNATC | 1 cut(s) | 296 |
| BseXI | GCAGC | 1 cut(s) | 321 |
| BsmAI | GTCTC | 1 cut(s) | 116 |
| Bso31I | GGTCTC | 1 cut(s) | 116 |
| Bsp143I | GATC | 1 cut(s) | 149 |
| BspMAI | CTGCAG | 1 cut(s) | 82 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BspQI | GCTCTTC | 1 cut(s) | 51 |
| BspTI | CTTAAG | 1 cut(s) | 62 |
| BspTNI | GGTCTC | 1 cut(s) | 116 |
| BssMI | GATC | 1 cut(s) | 149 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstAFI | CTTAAG | 1 cut(s) | 62 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 331 |
| BstDEI | CTNAG | 1 cut(s) | 361 |
| BstF5I | GGATG | 2 cut(s) | 211, 262 |
| BstKTI | GATC | 1 cut(s) | 152 |
| BstMAI | GTCTC | 1 cut(s) | 116 |
| BstMBI | GATC | 1 cut(s) | 149 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 331 |
| BstSFI | CTRYAG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 1 cut(s) | 321 |
| BtsCI | GGATG | 2 cut(s) | 211, 262 |
| BtsI | GCAGTG | 1 cut(s) | 75 |
| BtsIMutI | CAGTG | 3 cut(s) | 75, 159, 172 |
| CviAII | CATG | 1 cut(s) | 133 |
| CviJI | RGCY | 4 cut(s) | 61, 206, 231, 269 |
| CviKI_1 | RGCY | 4 cut(s) | 61, 206, 231, 269 |
| DdeI | CTNAG | 1 cut(s) | 361 |
| DpnI | GATC | 1 cut(s) | 151 |
| DpnII | GATC | 1 cut(s) | 149 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| Eco31I | GGTCTC | 1 cut(s) | 116 |
| FaeI | CATG | 1 cut(s) | 136 |
| FaiI | YATR | 2 cut(s) | 134, 200 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 45, 77 |
| FatI | CATG | 1 cut(s) | 132 |
| Fnu4HI | GCNGC | 1 cut(s) | 335 |
| FokI | GGATG | 2 cut(s) | 198, 269 |
| Fsp4HI | GCNGC | 1 cut(s) | 335 |
| FspBI | CTAG | 3 cut(s) | 107, 207, 228 |
| GluI | GCNGC | 1 cut(s) | 335 |
| GsuI | CTGGAG | 1 cut(s) | 138 |
| Hin1II | CATG | 1 cut(s) | 136 |
| HinfI | GANTC | 1 cut(s) | 365 |
| Hpy188I | TCNGA | 3 cut(s) | 40, 256, 302 |
| Hpy188III | TCNNGA | 2 cut(s) | 117, 246 |
| HpyAV | CCTTC | 1 cut(s) | 300 |
| HpyCH4V | TGCA | 5 cut(s) | 7, 80, 239, 325, 337 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 331 |
| HpyF3I | CTNAG | 1 cut(s) | 361 |
| Hsp92II | CATG | 1 cut(s) | 136 |
| Kzo9I | GATC | 1 cut(s) | 149 |
| LguI | GCTCTTC | 1 cut(s) | 51 |
| LpnPI | CCDG | 2 cut(s) | 102, 231 |
| Lsp1109I | GCAGC | 1 cut(s) | 321 |
| LweI | GCATC | 2 cut(s) | 73, 334 |
| MaeI | CTAG | 3 cut(s) | 107, 207, 228 |
| MalI | GATC | 1 cut(s) | 151 |
| MboI | GATC | 1 cut(s) | 149 |
| MboII | GAAGA | 3 cut(s) | 65, 68, 315 |
| MfeI | CAATTG | 1 cut(s) | 286 |
| MluCI | AATT | 3 cut(s) | 192, 278, 286 |
| MlyI | GAGTC | 1 cut(s) | 374 |
| MseI | TTAA | 3 cut(s) | 20, 63, 180 |
| MspCI | CTTAAG | 1 cut(s) | 62 |
| MunI | CAATTG | 1 cut(s) | 286 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 331 |
| NdeII | GATC | 1 cut(s) | 149 |
| NlaIII | CATG | 1 cut(s) | 136 |
| PciSI | GCTCTTC | 1 cut(s) | 51 |
| PkrI | GCNGC | 1 cut(s) | 336 |
| PleI | GAGTC | 1 cut(s) | 373 |
| PpsI | GAGTC | 1 cut(s) | 373 |
| PstI | CTGCAG | 1 cut(s) | 82 |
| SapI | GCTCTTC | 1 cut(s) | 51 |
| SaqAI | TTAA | 3 cut(s) | 20, 63, 180 |
| SatI | GCNGC | 1 cut(s) | 335 |
| Sau3AI | GATC | 1 cut(s) | 149 |
| SchI | GAGTC | 1 cut(s) | 374 |
| SetI | ASST | 4 cut(s) | 63, 112, 208, 233 |
| SfaNI | GCATC | 2 cut(s) | 73, 334 |
| SfcI | CTRYAG | 1 cut(s) | 78 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| Sse9I | AATT | 3 cut(s) | 192, 278, 286 |
| SspI | AATATT | 2 cut(s) | 96, 356 |
| SspMI | CTAG | 3 cut(s) | 107, 207, 228 |
| TasI | AATT | 3 cut(s) | 192, 278, 286 |
| Tru1I | TTAA | 3 cut(s) | 20, 63, 180 |
| Tru9I | TTAA | 3 cut(s) | 20, 63, 180 |
| TscAI | CASTG | 3 cut(s) | 82, 159, 172 |
| TseI | GCWGC | 1 cut(s) | 334 |
| TspGWI | ACGGA | 1 cut(s) | 130 |
| TspRI | CASTG | 3 cut(s) | 82, 159, 172 |
| Vha464I | CTTAAG | 1 cut(s) | 62 |
| XapI | RAATTY | 1 cut(s) | 278 |
| XspI | CTAG | 3 cut(s) | 107, 207, 228 |