Rorug02G0250000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
26037780 .. 26040143
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0250000.1

Sequence Viewer

Length: 822 bp
ATGGAAGAACATATGGACTTCTGTTTGCAATCTAGACTTCTCCGACCAAGATTTTCCTCCAACTTGGATCTCTCTGATCGTTTTGTGACATTTGTTGATCGCGCACTTTCCTTGCGCTCCTCGTCAGACATACAGAAATTTCGAATAAAGCAATGCAGGGTTTCGTATTTCAGTGATGAGGATTTCTCTCATTTTGAAGGCTGGATTTGCACTGCGATCAGGCATAATGTTGTTGACCTGAATCTTTTTGTTGGTGTTGAAGATTACTTGGAACTTAAACACAAAATGCCTCAAAGCCTTTTCCTGAGCAATACTCTGGTGAGTTTGAAGCTGTTTGAAAGTTGTTTTAGCTATGTTCTTCCTACGACAGGGTGTTTCCCAAGTCTCAAGTTCCTATCTGCTGCGTTTGTTTTTCCTGATACTCAATCGATGGAAAATCTCTTTTCTCATTGCCCTGTACTTGAAGATTTGACTATATTGGCATCCCTTGGAGATCAGGACAATTTGAGTGTCAATATATTTACACCTGAATTGAAGAAATTATCAATAAATTTGCACACTTATTCGATTGAGGGCAAAGATCGTCTGTCCAGTTGCATTATTAATGCCCCAAAGCTGGAAACCCTTTATCTCAAGATGGATGGTTTGACATATTACTTTCTGGAGAAGGCACATTTTCTAGCCCAGGCCAGACTTGAGTTCAATGACAGATGTAAAGATAACCCTGCTTTTGCTGACCATGCAATCAAGTTATTGGGAGGAATTTCCAGTGTTCAAGAGCTGTTGCTTTCAGTTTATTCTTTGGAGGTATTTATGGCCTAG

Protein Analysis

273

Amino Acids

31.27

Weight (kDa)

5.49

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 38 - 214 1.6e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 66 - 214 4.1e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 3 cut(s) 137, 550, 762
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 2 cut(s) 368, 616
AgsI TTSAA 8 cut(s) 197, 260, 328, 338, 464, 535, 703, 776
AjnI CCWGG 1 cut(s) 684
AluBI AGCT 4 cut(s) 331, 351, 616, 781
AluI AGCT 4 cut(s) 331, 351, 616, 781
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 1 cut(s) 75
AoxI GGCC 2 cut(s) 687, 816
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 3 cut(s) 137, 550, 762
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 2 cut(s) 104, 117
AsuHPI GGTGA 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 142
BbvI GCAGC 1 cut(s) 388
BccI CCATC 3 cut(s) 424, 631, 635
BciT130I CCWGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 3 cut(s) 33, 680, 820
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 686
BmrFI CCNGG 1 cut(s) 686
BmsI GCATC 1 cut(s) 491
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 298, 330
BpmI CTGGAG 1 cut(s) 683
Bpu10I CCTNAGC 1 cut(s) 305
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 3 cut(s) 371, 617, 716
Bsa29I ATCGAT 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 487, 684
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 616
Bse1I ACTGG 2 cut(s) 591, 768
Bse3DI GCAATG 2 cut(s) 158, 448
BseBI CCWGG 1 cut(s) 686
BseCI ATCGAT 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 487, 684
BseGI GGATG 2 cut(s) 482, 646
BseLI CCNNNNNNNGG 2 cut(s) 368, 616
BseMI GCAATG 2 cut(s) 158, 448
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 591, 768
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 689, 818
BshVI ATCGAT 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 368, 616
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 2 cut(s) 689, 818
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 6 cut(s) 67, 76, 97, 216, 493, 580
BspANI GGCC 2 cut(s) 689, 818
BspCNI CTCAG 1 cut(s) 297
BspDI ATCGAT 1 cut(s) 428
BspFNI CGCG 1 cut(s) 102
BspPI GGATC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 142
BsrDI GCAATG 2 cut(s) 158, 448
BsrI ACTGG 2 cut(s) 591, 768
BssECI CCNNGG 2 cut(s) 487, 684
BssMI GATC 6 cut(s) 67, 76, 97, 216, 493, 580
BssT1I CCWWGG 1 cut(s) 487
Bst2UI CCWGG 1 cut(s) 686
BstBI TTCGAA 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 305
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 482, 646
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 2 cut(s) 104, 117
BstKTI GATC 6 cut(s) 70, 79, 100, 219, 496, 583
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 6 cut(s) 67, 76, 97, 216, 493, 580
BstMWI GCNNNNNNNGC 2 cut(s) 207, 740
BstNI CCWGG 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 684
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 428
BsuRI GGCC 2 cut(s) 689, 818
BsuTUI ATCGAT 1 cut(s) 428
BtsCI GGATG 2 cut(s) 482, 646
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 3 cut(s) 178, 210, 775
CfoI GCGC 2 cut(s) 104, 117
ClaI ATCGAT 1 cut(s) 428
Csp6I GTAC 1 cut(s) 458
CviAII CATG 1 cut(s) 740
CviJI RGCY 9 cut(s) 201, 297, 331, 351, 616, 683, 689, 781, 818
CviKI_1 RGCY 9 cut(s) 201, 297, 331, 351, 616, 683, 689, 781, 818
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 1 cut(s) 305
DpnI GATC 6 cut(s) 69, 78, 99, 218, 495, 582
DpnII GATC 6 cut(s) 67, 76, 97, 216, 493, 580
Eco130I CCWWGG 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 1 cut(s) 743
FatI CATG 1 cut(s) 739
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 2 cut(s) 469, 653
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 3 cut(s) 33, 680, 820
GlaI GCGC 2 cut(s) 103, 116
GluI GCNGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 683
HaeIII GGCC 2 cut(s) 689, 818
HhaI GCGC 2 cut(s) 104, 117
Hin1II CATG 1 cut(s) 743
Hin6I GCGC 2 cut(s) 102, 115
HinP1I GCGC 2 cut(s) 102, 115
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 241
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 44, 76, 127
Hpy188III TCNNGA 7 cut(s) 33, 304, 416, 497, 634, 662, 776
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 191, 661
HpyCH4V TGCA 6 cut(s) 28, 156, 210, 556, 597, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 740
HpyF3I CTNAG 1 cut(s) 305
Hsp92II CATG 1 cut(s) 743
HspAI GCGC 2 cut(s) 102, 115
Kzo9I GATC 6 cut(s) 67, 76, 97, 216, 493, 580
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 491
MaeI CTAG 3 cut(s) 33, 680, 820
MaeIII GTNAC 1 cut(s) 85
MalI GATC 6 cut(s) 69, 78, 99, 218, 495, 582
MboI GATC 6 cut(s) 67, 76, 97, 216, 493, 580
MboII GAAGA 5 cut(s) 17, 272, 350, 476, 547
MflI RGATCY 1 cut(s) 67
MluCI AATT 6 cut(s) 137, 502, 530, 539, 550, 762
MmeI TCCRAC 2 cut(s) 67, 84
MnlI CCTC 7 cut(s) 67, 130, 172, 300, 565, 752, 799
MseI TTAA 2 cut(s) 276, 603
MspR9I CCNGG 1 cut(s) 686
MvaI CCWGG 1 cut(s) 686
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 207, 740
NdeI CATATG 1 cut(s) 12
NdeII GATC 6 cut(s) 67, 76, 97, 216, 493, 580
NlaIII CATG 1 cut(s) 743
NmuCI GTSAC 1 cut(s) 85
NspV TTCGAA 1 cut(s) 142
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 684
PspGI CCWGG 1 cut(s) 684
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
SaqAI TTAA 2 cut(s) 276, 603
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 6 cut(s) 67, 76, 97, 216, 493, 580
ScrFI CCNGG 1 cut(s) 686
SetI ASST 7 cut(s) 240, 333, 353, 529, 618, 783, 810
SfaNI GCATC 1 cut(s) 491
SfuI TTCGAA 1 cut(s) 142
SmlI CTYRAG 3 cut(s) 386, 632, 695
SmoI CTYRAG 3 cut(s) 386, 632, 695
Sse9I AATT 6 cut(s) 137, 502, 530, 539, 550, 762
SspMI CTAG 3 cut(s) 33, 680, 820
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 1 cut(s) 487
TaqI TCGA 3 cut(s) 142, 428, 566
TasI AATT 6 cut(s) 137, 502, 530, 539, 550, 762
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 276, 603
Tru9I TTAA 2 cut(s) 276, 603
TscAI CASTG 3 cut(s) 178, 217, 775
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 85
TspRI CASTG 3 cut(s) 178, 217, 775
VspI ATTAAT 1 cut(s) 603
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 3 cut(s) 137, 550, 762
XbaI TCTAGA 1 cut(s) 32
XspI CTAG 3 cut(s) 33, 680, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.