Rh5DG571400
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
87862116 .. 87864104
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG571400.1

Sequence Viewer

Length: 810 bp
ATGTCTTTTCTAACCAAGTCATTGCTGCTGCATTACATATATATGCAGCAAGATGTTATATGTTCCTCATCTATCTGTCTTCAGGACGTTCTTGTTGTTAAAGATTTTGATATACGAAAGGAGACAAATTGGACATCTTTGCTAGCTATTGAAAAGGTATACAAGGCTCAGGTGGTTTCAGAGAATTACCATGAAATCCATTTCTTCTGGGCTGGAAAGGGGACTTGCTGTATATACCAGAGGAGGGTACATATGGACCTCTTATTTCAGCCATCAGTGCTGCACCTGTGGGTATCTTGCACCGGAATATGCTATGCGCCTATGCGTGGACACTTGACAGAGAAGACCGATGTGTTTGCCTATGCTGTTGTCATTATAGAAATTGTCAGCGGTAGGCCAAATTCTGATCCATGTTTGGAAAGCGATATGGTTTATCTTCTTAAATTGGCTTGGAACTTGCATGAAAACAAACGTGAAGTTGATCTAGTAGACTTTAGATTATCTGAATTCAATAAGGAAGAAACAAGACGAATTATCAACATAGGACTTTTATGCACTCAGTCATCACCAATGCTACGACCACCTATGTCTCGCGTGATCGGAATGCTTGCAGGAGATATTGAAGTGACTCCTGCTATTTCAAAGCCTGGTTACTTGACAGACTGGAGATTTGATGATGCAACTACTATCACCAGCCAAACGAAATTTGGTGATGGGAGTACTGGCAACAGTCTAGGAACTGATATGTCAAATTGTCAACTAGAGGAACTGACTTCAGCTTTTACAACTCGTCGGCAAGTACAAGCGTGA

Protein Analysis

269

Amino Acids

30.64

Weight (kDa)

5.81

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 25 - 86 3.8e-06 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 159, 489
AccII CGCG 1 cut(s) 594
AciI CCGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 3 cut(s) 400, 506, 704
AcuI CTGAAG 2 cut(s) 65, 759
AfaI GTAC 3 cut(s) 249, 721, 801
AfiI CCNNNNNNNGG 2 cut(s) 244, 326
AgsI TTSAA 4 cut(s) 152, 511, 623, 642
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 2 cut(s) 146, 779
AluI AGCT 2 cut(s) 146, 779
Alw26I GTCTC 2 cut(s) 116, 594
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 4 cut(s) 25, 28, 46, 280
ApoI RAATTY 3 cut(s) 400, 506, 704
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 3 cut(s) 558, 682, 722
AsuNHI GCTAGC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 71, 350
BbvI GCAGC 4 cut(s) 12, 15, 58, 267
BccI CCATC 2 cut(s) 280, 707
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 648
BcoDI GTCTC 2 cut(s) 116, 594
BfaI CTAG 4 cut(s) 143, 485, 734, 761
BisI GCNGC 4 cut(s) 26, 29, 47, 281
BlsI GCNGC 4 cut(s) 27, 30, 48, 282
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 1 cut(s) 648
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 648
BmsI GCATC 1 cut(s) 667
BmtI GCTAGC 1 cut(s) 146
BpiI GAAGAC 2 cut(s) 71, 350
BpmI CTGGAG 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 326
Bse1I ACTGG 2 cut(s) 668, 727
Bse3DI GCAATG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 244, 326
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 182, 572
BseNI ACTGG 2 cut(s) 668, 727
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 4 cut(s) 12, 15, 58, 267
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 244, 326
BsmAI GTCTC 2 cut(s) 116, 594
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 406, 481, 597
BspACI CCGC 1 cut(s) 390
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 2 cut(s) 181, 571
BspFNI CGCG 1 cut(s) 594
BspOI GCTAGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 20
BsrI ACTGG 2 cut(s) 668, 727
BssMI GATC 3 cut(s) 406, 481, 597
BssNAI GTATAC 1 cut(s) 160
Bst1107I GTATAC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 731
BstC8I GCNNGC 2 cut(s) 144, 609
BstDEI CTNAG 2 cut(s) 168, 558
BstFNI CGCG 1 cut(s) 594
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 409, 484, 600
BstMAI GTCTC 2 cut(s) 116, 594
BstMBI GATC 3 cut(s) 406, 481, 597
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 648
BstSCI CCNGG 1 cut(s) 646
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 4 cut(s) 12, 15, 58, 267
BstV2I GAAGAC 2 cut(s) 71, 350
BstZ17I GTATAC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 144, 609
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 3 cut(s) 248, 720, 800
CviAII CATG 3 cut(s) 191, 411, 461
CviJI RGCY 9 cut(s) 146, 167, 212, 271, 397, 449, 646, 696, 779
CviKI_1 RGCY 9 cut(s) 146, 167, 212, 271, 397, 449, 646, 696, 779
CviQI GTAC 3 cut(s) 248, 720, 800
DdeI CTNAG 2 cut(s) 168, 558
DpnI GATC 3 cut(s) 408, 483, 599
DpnII GATC 3 cut(s) 406, 481, 597
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 65, 759
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 646
FaeI CATG 3 cut(s) 194, 414, 464
FaqI GGGAC 1 cut(s) 235
FatI CATG 3 cut(s) 190, 410, 460
FauNDI CATATG 1 cut(s) 252
FblI GTMKAC 2 cut(s) 159, 489
Fnu4HI GCNGC 4 cut(s) 26, 29, 47, 281
Fsp4HI GCNGC 4 cut(s) 26, 29, 47, 281
FspBI CTAG 4 cut(s) 143, 485, 734, 761
GlaI GCGC 1 cut(s) 318
GluI GCNGC 4 cut(s) 26, 29, 47, 281
GsuI CTGGAG 1 cut(s) 685
HaeIII GGCC 1 cut(s) 397
HapII CCGG 1 cut(s) 303
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 194, 414, 464
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 758
HindII GTYRAC 1 cut(s) 758
HinfI GANTC 1 cut(s) 628
HpaII CCGG 1 cut(s) 303
HphI GGTGA 3 cut(s) 558, 682, 722
Hpy166II GTNNAC 4 cut(s) 160, 329, 490, 758
Hpy188I TCNGA 4 cut(s) 181, 406, 505, 602
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 4 cut(s) 160, 329, 490, 758
Hpy99I CGWCG 1 cut(s) 795
HpyCH4III ACNGT 1 cut(s) 731
HpyCH4IV ACGT 2 cut(s) 87, 472
HpyCH4V TGCA 8 cut(s) 31, 46, 283, 300, 460, 555, 611, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 168, 558
HpySE526I ACGT 2 cut(s) 87, 472
Hsp92II CATG 3 cut(s) 194, 414, 464
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 3 cut(s) 406, 481, 597
Lsp1109I GCAGC 4 cut(s) 12, 15, 58, 267
LweI GCATC 1 cut(s) 667
MaeI CTAG 4 cut(s) 143, 485, 734, 761
MaeII ACGT 2 cut(s) 87, 472
MaeIII GTNAC 2 cut(s) 625, 650
MalI GATC 3 cut(s) 408, 483, 599
MboI GATC 3 cut(s) 406, 481, 597
MboII GAAGA 5 cut(s) 71, 196, 355, 428, 530
MluCI AATT 9 cut(s) 127, 184, 381, 400, 443, 506, 531, 704, 751
MlyI GAGTC 1 cut(s) 622
MnlI CCTC 5 cut(s) 76, 234, 237, 269, 757
MseI TTAA 2 cut(s) 99, 441
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 648
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeI CATATG 1 cut(s) 252
NdeII GATC 3 cut(s) 406, 481, 597
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 3 cut(s) 194, 414, 464
NmuCI GTSAC 1 cut(s) 625
PctI GAATGC 1 cut(s) 609
PkrI GCNGC 4 cut(s) 27, 30, 48, 282
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspPI GGNCC 1 cut(s) 256
RsaI GTAC 3 cut(s) 249, 721, 801
RsaNI GTAC 3 cut(s) 248, 720, 800
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 99, 441
SatI GCNGC 4 cut(s) 26, 29, 47, 281
Sau3AI GATC 3 cut(s) 406, 481, 597
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 721
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 1 cut(s) 648
SetI ASST 9 cut(s) 90, 148, 159, 174, 261, 288, 475, 586, 781
SfaNI GCATC 1 cut(s) 667
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 9 cut(s) 127, 184, 381, 400, 443, 506, 531, 704, 751
SsiI CCGC 1 cut(s) 390
SspMI CTAG 4 cut(s) 143, 485, 734, 761
StyD4I CCNGG 1 cut(s) 646
TaaI ACNGT 1 cut(s) 731
TaiI ACGT 2 cut(s) 90, 475
TaqII GACCGA 1 cut(s) 362
TasI AATT 9 cut(s) 127, 184, 381, 400, 443, 506, 531, 704, 751
TatI WGTACW 2 cut(s) 719, 799
Tru1I TTAA 2 cut(s) 99, 441
Tru9I TTAA 2 cut(s) 99, 441
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 4 cut(s) 25, 28, 46, 280
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 2 cut(s) 207, 477
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 3 cut(s) 400, 506, 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XmiI GTMKAC 2 cut(s) 159, 489
XspI CTAG 4 cut(s) 143, 485, 734, 761
ZrmI AGTACT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.