MD00G1047400.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000088
Physical Location & Seq
Reverse (-)
8806278 .. 8812933
6656 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1047400.v1.1.491

Sequence Viewer

Length: 2961 bp
ATGCCACATCACCAAACTGAGTGTATGCTCTTAACAAACGAGGGGTGTTTCCAGAAGAATTTGAGGATCAATCAGAATTATTTCACCGGTCCCCTACCGGCATTCATTGGCAATATGGCTGCATTGACTCACTTGTCAATTAGGGTCAATTCATTCTCTGGGTCCATCCCCAAGGAGCTTGGAAACCTTACGGAGCTAACTGTGCTGGACATCGGACCAAATAATTTCTCCGGAACACTCCCTCCAGAACTTGGTAATTTAGTCAAGCTCGAGGAAATTTACATGGACAGCTGTGGACTCAGTGGTGAAATTCCTTCAACATTTGCCAAGCTCACCAACATGCAAGTCTTTCCTTTCTCAGGAAAGATACCAGATTTCATAGGGAATTGGACACAACTCTATGATTTGCAAATTCAAGGGAGCTCTTTCGAAGGCCCTATACCAACCAGCTTTTCTCAACTGACCTCATTGAACACTCTGCGAATCAGTGATATATACAATGGGAGCTCCTCTCTTGATTTCATAAAAAATCTGACAAGCTTGACTGAATTAAGACTACGAAACGCATTAATCACTGGTACCATCCCATCTGATATTGGAGAAAATCAAAGTCTACAGACACTGGATCTGAGTTTCAACGATTTGACAGGCCAACTCCCAAGTTCCTTGTTCAGCTTGAGTTCTCTTACATCCTTGTTTCTTGGAAACAATAGTCTGTCCGGACCTCTTCCGAGCCAAAAGAGCAATCAACTTCAGACTATAGATTTGTCTTACAATTTTTTATCAGGAAGCTTTCCCCAGTGGGGGTCCGCAATATCGCAACTGTACGTGTCCTTTTATCTTTCACCTTCATTTTACAGTTTAAATCATCAGAATATGTTCGGACTAAAAATTATCGCTGAGATTCGTTTTCACAGTGCTACTTGCCTGCCTACTAAGAACTTAGTGGTCAACAACTTCACATTTGACAGTTCAAACATAGCTCTTGCTGGATTGAATTGCCTACAGAGAAATTTTCCATGCAATCGAAATACCCCACGATATGCAAACTTCTCAATCAAGTGTGGTGGAAAACAAATGACGGGAAGTGATGGCATATTGTATGAGACTGAAGACTCAGCTCTTGGCCGAGCAACGTTCAGTATAGACAGTACATGGAAATGGGCTGTCAGCAATGCCGGTTTGTTTGATTATTACAGAAATGTCGGTATGCTTTCTGACGGAGTGGACCGACCGTTTCTGGTAAAAACTCATGCACAAGTCACCGGAACAAATGTGACCCCAGAGCTTTTCCAGACTTCAAGAGTGTCCCCAGGATCACTGAGATACTATGGCCTGGGCCTTGAGAATGGGCTCTACACTGTAACATTGCACTTTGCAGAGACGGTTTATGAAAGTCGCACTTCGCAAACTTGGCAAAGTCTAGGACGGCGTGTATTTGATATCTATATTCAGGGTACCTGTAGGACGAAGGACTTTGACATATCGAAGGAGGCAGGTGGCGTTAACCGAGCAGTTGTGAGAAAATTTAATGTTAGCGTGTTAGAGAATTATCTTGAAATTCATATGTTCTGGGTTGGTAAAGGGACTTGTTGCATACCCGATAATGGTGATTACGGCCCACTAATAGCAGCTGTCCATGCTGCTTCAGATTTTACACCAACAGTTTCAAGGCTTCCATCAACTACTCCAGGAAAGAAGAGCAGGACTGGGTTGATAGTTGGTATTGCAGTTCCTGTTGGAGTTGTGAGCTTACTATTAATATTTGCGATTCTATATATCAGGAGGAAAAAATCAGAAAAAGAGGACGACGAAGATATTCTAGGATTAGGCCCTCGACCAAATACTTTCAATTATGCTGAGTTGAGAGCTGCAACCGAAGATTTTAATCCTTCAAATAAGTTAGGAGAGGGAGGATATGGCCCTGTTTATAAGGGTACACTTTCTGATGGGAGAGTAGTGGCTGTGAAGCAACTTTCAGTAGCATCTCACCAAGGGAAGAGTCAATTTGTATCTGAAATTGCTACCATATCTGCTGTGCAACATCGGAATCTAGTGAAATTGTACGGATGCTGCATCGAAGGCAGCCACCGCATTTTGGTTTATGAGTATCTTGGAAACAAGAGCCTTGATCAGGCACTTTTTGGAACAAGTAACTTGCACCTTGACTGGCCTACTCGATTCAATATATTGTTGGGAACAGCAAGAGGACTTGCTTACCTTCATGAGGAGTCAAGGCCAAGGATTGTACATCGAGATGTCAAAGCAAGTAATATTTTGCTCGATGCAAAACTCTCACCAAAAATATCAGATTTTGGACTGGCAAAGCTTTATGATGACGAGAAAACCCACATCAGCACCCGGGTTGCAGGGACAATAGGCTATTTGGCACCGGAGTATGCAATGTTTGGACATTTGACAGAGAAGGTCGATGTGTTTGGTTTTGGAGTCGTTGTTTTGGAGATCCTCAGCGGGAGACCAAACTCGTACAATAACTTGGATCCAGAAAAGATTTATCTTCTTGAATGGGTATGGACTCTACATGAAAACGACCAAACTCTGGGGCTAATGGATCCGAGATTGACAGAGTTTGATGAAACTGAAGCAACTAGATTGATAAGAGCAGCTCTCATGTGCACGCAGGGATCACCGATGGCGAGGCCATCTATGTCACGCTTGGTTGCAATGCTCTCTGGAGACATTGACATAGGCACTGTTATGTCGAAGCCAAACTATTTGACAGATTATAATTTTAAAGATGTAACAACATTTTCAACAGGTAGATTTTTGGTGGAGGATGATACCCCATCAACTGCATCCAAGCATAGTAATGTTCGCCTCAACTATCAGCCCGAAGGCAGCGATGCAAGTAATGCTAACACCTCCGGGGTTGACCTTGCGCCTTCTCCAGTAAACGTCACTCAATCACTGCTCGTTGGCATTATAGGAGAAGGAATGTGA

Protein Analysis

987

Amino Acids

108.48

Weight (kDa)

5.93

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 155 - 239 2.2e-08 Leucine-rich repeat region
Malectin PF11721 351 - 546 3e-35 Malectin domain
Pkinase PF00069 631 - 893 1.9e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 632 - 896 4.3e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1932, 2748
AarI CACCTGC 1 cut(s) 1487
AasI GACNNNNNNGTC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 1487
Acc65I GGTACC 2 cut(s) 578, 1457
AccB1I GGYRCC 3 cut(s) 578, 1457, 2389
AccB7I CCANNNNNTGG 2 cut(s) 251, 2560
AccI GTMKAC 1 cut(s) 613
AccIII TCCGGA 2 cut(s) 230, 719
AciI CCGC 3 cut(s) 810, 2092, 2472
AclI AACGTT 1 cut(s) 1136
AclWI GGATC 9 cut(s) 74, 633, 1324, 2458, 2495, 2508, 2567, 2580, 2653
AcoI YGGCCR 1 cut(s) 1126
AcsI RAATTY 7 cut(s) 58, 276, 309, 411, 1012, 1526, 1560
AcuI CTGAAG 4 cut(s) 737, 1131, 1632, 2622
AfaI GTAC 8 cut(s) 580, 827, 1153, 1459, 1939, 2066, 2250, 2489
AfiI CCNNNNNNNGG 9 cut(s) 251, 359, 803, 804, 1607, 2098, 2134, 2227, 2560
AflIII ACRYGT 1 cut(s) 828
AgeI ACCGGT 1 cut(s) 86
AjnI CCWGG 3 cut(s) 1312, 1335, 1690
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
Alw21I GWGCWC 3 cut(s) 425, 509, 2639
Alw26I GTCTC 4 cut(s) 1100, 1376, 2470, 2691
Alw44I GTGCAC 1 cut(s) 2635
AlwI GGATC 9 cut(s) 74, 633, 1324, 2458, 2495, 2508, 2567, 2580, 2653
AlwNI CAGNNNCTG 2 cut(s) 622, 1736
Ama87I CYCGRG 2 cut(s) 269, 2361
Aor13HI TCCGGA 2 cut(s) 230, 719
ApaLI GTGCAC 1 cut(s) 2635
ApeKI GCWGC 8 cut(s) 119, 1631, 1643, 1871, 2073, 2085, 2624, 2859
ApoI RAATTY 7 cut(s) 58, 276, 309, 411, 1012, 1526, 1560
ArsI GACNNNNNNTTYG 2 cut(s) 748, 780
AseI ATTAAT 2 cut(s) 569, 1760
AsiGI ACCGGT 1 cut(s) 86
Asp700I GAANNNNTTC 3 cut(s) 80, 878, 1818
Asp718I GGTACC 2 cut(s) 578, 1457
AspLEI GCGC 1 cut(s) 2902
AsuC2I CCSGG 3 cut(s) 2362, 2363, 2887
AsuHPI GGTGA 9 cut(s) 76, 317, 325, 837, 1255, 1622, 1982, 2289, 2640
AsuII TTCGAA 1 cut(s) 429
AvaI CYCGRG 2 cut(s) 269, 2361
AvaII GGWCC 6 cut(s) 89, 162, 215, 722, 807, 1228
BaeGI GKGCMC 1 cut(s) 2639
BamHI GGATCC 2 cut(s) 2500, 2572
BanI GGYRCC 3 cut(s) 578, 1457, 2389
BanII GRGCYC 3 cut(s) 425, 509, 1356
BarI GAAGNNNNNNTAC 2 cut(s) 423, 455
BbsI GAAGAC 1 cut(s) 1119
Bbv12I GWGCWC 3 cut(s) 425, 509, 2639
BbvCI CCTCAGC 1 cut(s) 2468
BbvI GCAGC 8 cut(s) 106, 1630, 1643, 1858, 2060, 2097, 2636, 2871
BccI CCATC 9 cut(s) 173, 590, 595, 1085, 1687, 1943, 2647, 2671, 2815
BceAI ACGGC 2 cut(s) 1445, 1633
BciT130I CCWGG 3 cut(s) 1314, 1337, 1692
BclI TGATCA 1 cut(s) 2131
BcnI CCSGG 3 cut(s) 2362, 2363, 2887
BcoDI GTCTC 4 cut(s) 1100, 1376, 2470, 2691
BfaI CTAG 4 cut(s) 1424, 1823, 2054, 2610
BfmI CTRYAG 4 cut(s) 614, 759, 1004, 1462
BfuAI ACCTGC 1 cut(s) 1487
BisI GCNGC 8 cut(s) 120, 1632, 1644, 1872, 2074, 2086, 2625, 2860
BlsI GCNGC 8 cut(s) 121, 1633, 1645, 1873, 2075, 2087, 2626, 2861
Bme1390I CCNGG 6 cut(s) 1314, 1337, 1692, 2362, 2363, 2887
Bme18I GGWCC 6 cut(s) 89, 162, 215, 722, 807, 1228
BmeT110I CYCGRG 2 cut(s) 269, 2361
BmiI GGNNCC 8 cut(s) 91, 163, 580, 808, 1459, 2391, 2502, 2574
BmrFI CCNGG 6 cut(s) 1314, 1337, 1692, 2362, 2363, 2887
BmrI ACTGGG 2 cut(s) 793, 1719
BmsI GCATC 6 cut(s) 1994, 2060, 2085, 2275, 2825, 2854
BmuI ACTGGG 2 cut(s) 793, 1719
BpiI GAAGAC 1 cut(s) 1119
BplI GAGNNNNNCTC 4 cut(s) 496, 528, 2613, 2645
BpmI CTGGAG 4 cut(s) 228, 1674, 2715, 2892
Bpu10I CCTNAGC 1 cut(s) 2468
Bpu14I TTCGAA 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 697, 1364
BpuMI CCSGG 3 cut(s) 2362, 2363, 2887
BsaAI YACGTR 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 1887
BsaI GGTCTC 1 cut(s) 2470
BsaJI CCNNGG 7 cut(s) 171, 1312, 1336, 1993, 2240, 2361, 2886
BsaWI WCCGGW 5 cut(s) 86, 230, 719, 1265, 2392
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 2439, 2469
Bsc4I CCNNNNNNNGG 9 cut(s) 251, 359, 803, 804, 1607, 2098, 2134, 2227, 2560
Bse118I RCCGGY 3 cut(s) 86, 97, 1178
Bse1I ACTGG 7 cut(s) 580, 627, 799, 1714, 2174, 2325, 2909
Bse3DI GCAATG 4 cut(s) 1180, 1367, 2409, 2691
Bse8I GATNNNNATC 1 cut(s) 1887
BseAI TCCGGA 2 cut(s) 230, 719
BseBI CCWGG 3 cut(s) 1314, 1337, 1692
BseDI CCNNGG 7 cut(s) 171, 1312, 1336, 1993, 2240, 2361, 2886
BseGI GGATG 6 cut(s) 165, 582, 689, 2075, 2803, 2816
BseJI GATNNNNATC 1 cut(s) 1887
BseLI CCNNNNNNNGG 9 cut(s) 251, 359, 803, 804, 1607, 2098, 2134, 2227, 2560
BseMI GCAATG 4 cut(s) 1180, 1367, 2409, 2691
BseMII CTCAG 9 cut(s) 9, 313, 372, 620, 891, 1131, 1313, 1851, 2482
BseNI ACTGG 7 cut(s) 580, 627, 799, 1714, 2174, 2325, 2909
BseRI GAGGAG 2 cut(s) 499, 2243
BseSI GKGCMC 1 cut(s) 2639
BseXI GCAGC 8 cut(s) 106, 1630, 1643, 1858, 2060, 2097, 2636, 2871
Bsh1285I CGRYCG 1 cut(s) 1235
BshNI GGYRCC 3 cut(s) 578, 1457, 2389
BshTI ACCGGT 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 1235
BsiHKAI GWGCWC 3 cut(s) 425, 509, 2639
BsiHKCI CYCGRG 2 cut(s) 269, 2361
BsiSI CCGG 9 cut(s) 87, 98, 231, 720, 1179, 1266, 2362, 2393, 2886
BslFI GGGAC 4 cut(s) 75, 1294, 1600, 2386
BslI CCNNNNNNNGG 9 cut(s) 251, 359, 803, 804, 1607, 2098, 2134, 2227, 2560
BsmAI GTCTC 4 cut(s) 1100, 1376, 2470, 2691
BsmBI CGTCTC 1 cut(s) 1376
BsmFI GGGAC 4 cut(s) 75, 1294, 1600, 2386
BsmI GAATGC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 2470
BsoBI CYCGRG 2 cut(s) 269, 2361
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 4 cut(s) 425, 509, 1356, 2639
Bsp13I TCCGGA 2 cut(s) 230, 719
Bsp1407I TGTACA 1 cut(s) 2248
Bsp143I GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
BspACI CCGC 3 cut(s) 810, 2092, 2472
BspCNI CTCAG 9 cut(s) 10, 312, 371, 621, 892, 1130, 1314, 1852, 2481
BspEI TCCGGA 2 cut(s) 230, 719
BspHI TCATGA 1 cut(s) 2224
BspLI GGNNCC 8 cut(s) 91, 163, 580, 808, 1459, 2391, 2502, 2574
BspMI ACCTGC 1 cut(s) 1487
BspPI GGATC 9 cut(s) 74, 633, 1324, 2458, 2495, 2508, 2567, 2580, 2653
BspQI GCTCTTC 1 cut(s) 1694
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 3 cut(s) 578, 1457, 2389
BspTNI GGTCTC 1 cut(s) 2470
BsrDI GCAATG 4 cut(s) 1180, 1367, 2409, 2691
BsrFI RCCGGY 3 cut(s) 86, 97, 1178
BsrGI TGTACA 1 cut(s) 2248
BsrI ACTGG 7 cut(s) 580, 627, 799, 1714, 2174, 2325, 2909
BssAI RCCGGY 3 cut(s) 86, 97, 1178
BssECI CCNNGG 7 cut(s) 171, 1312, 1336, 1993, 2240, 2361, 2886
BssMI GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
BssT1I CCWWGG 3 cut(s) 171, 1993, 2240
Bst2UI CCWGG 3 cut(s) 1314, 1337, 1692
Bst6I CTCTTC 3 cut(s) 732, 1694, 1994
BstAPI GCANNNNNTGC 1 cut(s) 2873
BstAUI TGTACA 1 cut(s) 2248
BstBAI YACGTR 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 2 cut(s) 929, 2639
BstENI CCTNNNNNAGG 3 cut(s) 357, 2132, 2225
BstF5I GGATG 6 cut(s) 165, 582, 689, 2075, 2803, 2816
BstHHI GCGC 1 cut(s) 2902
BstKTI GATC 8 cut(s) 69, 628, 1319, 2134, 2466, 2503, 2575, 2648
BstMAI GTCTC 4 cut(s) 1100, 1376, 2470, 2691
BstMBI GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
BstMCI CGRYCG 1 cut(s) 1235
BstMWI GCNNNNNNNGC 7 cut(s) 202, 741, 1414, 1640, 2082, 2091, 2873
BstNI CCWGG 3 cut(s) 1314, 1337, 1692
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 6 cut(s) 1312, 1335, 1690, 2360, 2361, 2885
BstSFI CTRYAG 4 cut(s) 614, 759, 1004, 1462
BstSLI GKGCMC 1 cut(s) 2639
BstV1I GCAGC 8 cut(s) 106, 1630, 1643, 1858, 2060, 2097, 2636, 2871
BstV2I GAAGAC 1 cut(s) 1119
BstX2I RGATCY 4 cut(s) 625, 2463, 2500, 2572
BstYI RGATCY 4 cut(s) 625, 2463, 2500, 2572
BtgZI GCGATG 1 cut(s) 2877
BtsCI GGATG 6 cut(s) 165, 582, 689, 2075, 2803, 2816
BtsI GCAGTG 1 cut(s) 2927
BveI ACCTGC 1 cut(s) 1487
Cac8I GCNNGC 2 cut(s) 929, 2639
CaiI CAGNNNCTG 2 cut(s) 622, 1736
CciI TCATGA 1 cut(s) 2224
CfoI GCGC 1 cut(s) 2902
Cfr10I RCCGGY 3 cut(s) 86, 97, 1178
Cfr9I CCCGGG 1 cut(s) 2361
Csp6I GTAC 8 cut(s) 579, 826, 1152, 1458, 1938, 2065, 2249, 2488
CspAI ACCGGT 1 cut(s) 86
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 9 cut(s) 283, 340, 1020, 1155, 1253, 1640, 2225, 2543, 2632
CviQI GTAC 8 cut(s) 579, 826, 1152, 1458, 1938, 2065, 2249, 2488
DpnI GATC 8 cut(s) 68, 627, 1318, 2133, 2465, 2502, 2574, 2647
DpnII GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
DraI TTTAAA 2 cut(s) 864, 2755
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 1126
Eam1104I CTCTTC 3 cut(s) 732, 1694, 1994
EarI CTCTTC 3 cut(s) 732, 1694, 1994
Ecl136II GAGCTC 2 cut(s) 423, 507
Eco130I CCWWGG 3 cut(s) 171, 1993, 2240
Eco24I GRGCYC 3 cut(s) 425, 509, 1356
Eco31I GGTCTC 1 cut(s) 2470
Eco32I GATATC 1 cut(s) 1444
Eco47I GGWCC 6 cut(s) 89, 162, 215, 722, 807, 1228
Eco53kI GAGCTC 2 cut(s) 423, 507
Eco57I CTGAAG 4 cut(s) 737, 1131, 1632, 2622
Eco88I CYCGRG 2 cut(s) 269, 2361
EcoICRI GAGCTC 2 cut(s) 423, 507
EcoNI CCTNNNNNAGG 3 cut(s) 357, 2132, 2225
EcoO109I RGGNCCY 2 cut(s) 434, 1832
EcoRII CCWGG 3 cut(s) 1312, 1335, 1690
EcoRV GATATC 1 cut(s) 1444
EcoT14I CCWWGG 3 cut(s) 171, 1993, 2240
EcoT38I GRGCYC 3 cut(s) 425, 509, 1356
ErhI CCWWGG 3 cut(s) 171, 1993, 2240
Esp3I CGTCTC 1 cut(s) 1376
FaeI CATG 9 cut(s) 286, 343, 1023, 1158, 1256, 1643, 2228, 2546, 2635
FalI AAGNNNNNCTT 2 cut(s) 1387, 1419
FaqI GGGAC 4 cut(s) 75, 1294, 1600, 2386
FatI CATG 9 cut(s) 282, 339, 1019, 1154, 1252, 1639, 2224, 2542, 2631
FauI CCCGC 1 cut(s) 2465
FauNDI CATATG 1 cut(s) 1566
FbaI TGATCA 1 cut(s) 2131
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 8 cut(s) 120, 1632, 1644, 1872, 2074, 2086, 2625, 2860
FokI GGATG 6 cut(s) 152, 569, 676, 2082, 2803, 2810
FriOI GRGCYC 3 cut(s) 425, 509, 1356
Fsp4HI GCNGC 8 cut(s) 120, 1632, 1644, 1872, 2074, 2086, 2625, 2860
FspBI CTAG 4 cut(s) 1424, 1823, 2054, 2610
GlaI GCGC 1 cut(s) 2901
GluI GCNGC 8 cut(s) 120, 1632, 1644, 1872, 2074, 2086, 2625, 2860
GsuI CTGGAG 4 cut(s) 228, 1674, 2715, 2892
HapII CCGG 9 cut(s) 87, 98, 231, 720, 1179, 1266, 2362, 2393, 2886
HhaI GCGC 1 cut(s) 2902
Hin1II CATG 9 cut(s) 286, 343, 1023, 1158, 1256, 1643, 2228, 2546, 2635
Hin6I GCGC 1 cut(s) 2900
HinP1I GCGC 1 cut(s) 2900
HincII GTYRAC 3 cut(s) 952, 1507, 2893
HindII GTYRAC 3 cut(s) 952, 1507, 2893
HindIII AAGCTT 3 cut(s) 538, 790, 2327
HpaI GTTAAC 1 cut(s) 1507
HpaII CCGG 9 cut(s) 87, 98, 231, 720, 1179, 1266, 2362, 2393, 2886
HphI GGTGA 9 cut(s) 76, 317, 325, 837, 1255, 1622, 1982, 2289, 2640
Hpy166II GTNNAC 9 cut(s) 296, 614, 952, 1228, 1507, 1940, 2637, 2893, 2914
Hpy8I GTNNAC 9 cut(s) 296, 614, 952, 1228, 1507, 1940, 2637, 2893, 2914
Hpy99I CGWCG 1 cut(s) 1814
HpyCH4IV ACGT 3 cut(s) 828, 1136, 2916
HpyF10VI GCNNNNNNNGC 7 cut(s) 202, 741, 1414, 1640, 2082, 2091, 2873
HpySE526I ACGT 3 cut(s) 828, 1136, 2916
Hsp92II CATG 9 cut(s) 286, 343, 1023, 1158, 1256, 1643, 2228, 2546, 2635
HspAI GCGC 1 cut(s) 2900
Kpn2I TCCGGA 2 cut(s) 230, 719
KpnI GGTACC 2 cut(s) 582, 1461
Ksp22I TGATCA 1 cut(s) 2131
KspAI GTTAAC 1 cut(s) 1507
Kzo9I GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
LguI GCTCTTC 1 cut(s) 1694
LmnI GCTCC 5 cut(s) 175, 193, 420, 504, 512
Lsp1109I GCAGC 8 cut(s) 106, 1630, 1643, 1858, 2060, 2097, 2636, 2871
LweI GCATC 6 cut(s) 1994, 2060, 2085, 2275, 2825, 2854
MaeI CTAG 4 cut(s) 1424, 1823, 2054, 2610
MaeII ACGT 3 cut(s) 828, 1136, 2916
MaeIII GTNAC 7 cut(s) 1261, 1276, 1363, 2153, 2670, 2761, 2917
MalI GATC 8 cut(s) 68, 627, 1318, 2133, 2465, 2502, 2574, 2647
MboI GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
MboII GAAGA 8 cut(s) 67, 719, 1124, 1711, 1826, 1892, 2011, 2510
MflI RGATCY 4 cut(s) 625, 2463, 2500, 2572
MhlI GDGCHC 4 cut(s) 425, 509, 1356, 2639
MlyI GAGTC 7 cut(s) 121, 291, 1109, 2011, 2240, 2457, 2530
MmeI TCCRAC 1 cut(s) 1720
MroI TCCGGA 2 cut(s) 230, 719
MroXI GAANNNNTTC 3 cut(s) 80, 878, 1818
MseI TTAA 9 cut(s) 32, 551, 569, 863, 1506, 1530, 1760, 1887, 2754
MslI CAYNNNNRTG 5 cut(s) 338, 1159, 2256, 2717, 2829
MspA1I CMGCKG 3 cut(s) 291, 1634, 2472
MspI CCGG 9 cut(s) 87, 98, 231, 720, 1179, 1266, 2362, 2393, 2886
MspR9I CCNGG 6 cut(s) 1314, 1337, 1692, 2362, 2363, 2887
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 3 cut(s) 1314, 1337, 1692
MwoI GCNNNNNNNGC 7 cut(s) 202, 741, 1414, 1640, 2082, 2091, 2873
NciI CCSGG 3 cut(s) 2362, 2363, 2887
NdeI CATATG 1 cut(s) 1566
NdeII GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
NlaIII CATG 9 cut(s) 286, 343, 1023, 1158, 1256, 1643, 2228, 2546, 2635
NlaIV GGNNCC 8 cut(s) 91, 163, 580, 808, 1459, 2391, 2502, 2574
NmeAIII GCCGAG 1 cut(s) 1154
NmuCI GTSAC 4 cut(s) 1261, 1276, 2670, 2917
NspI RCATGY 1 cut(s) 343
NspV TTCGAA 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 2224
PaqCI CACCTGC 1 cut(s) 1487
PciSI GCTCTTC 1 cut(s) 1694
PctI GAATGC 1 cut(s) 101
PdmI GAANNNNTTC 3 cut(s) 80, 878, 1818
PfeI GAWTC 5 cut(s) 483, 904, 1771, 2050, 2181
PflMI CCANNNNNTGG 2 cut(s) 251, 2560
PfoI TCCNGGA 1 cut(s) 1690
PinAI ACCGGT 1 cut(s) 86
PkrI GCNGC 8 cut(s) 121, 1633, 1645, 1873, 2075, 2087, 2626, 2861
PleI GAGTC 7 cut(s) 121, 291, 1109, 2010, 2239, 2456, 2530
PpsI GAGTC 7 cut(s) 121, 291, 1109, 2010, 2239, 2456, 2530
Ppu21I YACGTR 1 cut(s) 829
PshBI ATTAAT 2 cut(s) 569, 1760
PsiI TTATAA 2 cut(s) 1932, 2748
Psp124BI GAGCTC 2 cut(s) 425, 509
Psp1406I AACGTT 1 cut(s) 1136
Psp6I CCWGG 3 cut(s) 1312, 1335, 1690
PspGI CCWGG 3 cut(s) 1312, 1335, 1690
PspN4I GGNNCC 8 cut(s) 91, 163, 580, 808, 1459, 2391, 2502, 2574
PspXI VCTCGAGB 1 cut(s) 269
PstNI CAGNNNCTG 2 cut(s) 622, 1736
PsuI RGATCY 4 cut(s) 625, 2463, 2500, 2572
PvuII CAGCTG 2 cut(s) 291, 1634
RsaI GTAC 8 cut(s) 580, 827, 1153, 1459, 1939, 2066, 2250, 2489
RsaNI GTAC 8 cut(s) 579, 826, 1152, 1458, 1938, 2065, 2249, 2488
RseI CAYNNNNRTG 5 cut(s) 338, 1159, 2256, 2717, 2829
SacI GAGCTC 2 cut(s) 425, 509
SapI GCTCTTC 1 cut(s) 1694
SaqAI TTAA 9 cut(s) 32, 551, 569, 863, 1506, 1530, 1760, 1887, 2754
SatI GCNGC 8 cut(s) 120, 1632, 1644, 1872, 2074, 2086, 2625, 2860
Sau3AI GATC 8 cut(s) 66, 625, 1316, 2131, 2463, 2500, 2572, 2645
SchI GAGTC 7 cut(s) 121, 291, 1109, 2011, 2240, 2457, 2530
ScrFI CCNGG 6 cut(s) 1314, 1337, 1692, 2362, 2363, 2887
SduI GDGCHC 4 cut(s) 425, 509, 1356, 2639
SfaNI GCATC 6 cut(s) 1994, 2060, 2085, 2275, 2825, 2854
SfcI CTRYAG 4 cut(s) 614, 759, 1004, 1462
Sfr274I CTCGAG 1 cut(s) 269
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 6 cut(s) 89, 162, 215, 722, 807, 1228
SlaI CTCGAG 1 cut(s) 269
SmaI CCCGGG 1 cut(s) 2363
SmiMI CAYNNNNRTG 5 cut(s) 338, 1159, 2256, 2717, 2829
SmlI CTYRAG 3 cut(s) 269, 676, 1343
SmoI CTYRAG 3 cut(s) 269, 676, 1343
SsiI CCGC 3 cut(s) 810, 2092, 2472
SspI AATATT 2 cut(s) 1764, 2275
SspMI CTAG 4 cut(s) 1424, 1823, 2054, 2610
SstI GAGCTC 2 cut(s) 425, 509
StyD4I CCNGG 6 cut(s) 1312, 1335, 1690, 2360, 2361, 2885
StyI CCWWGG 3 cut(s) 171, 1993, 2240
TaiI ACGT 3 cut(s) 831, 1139, 2919
TaqII GACCGA 1 cut(s) 1245
TatI WGTACW 2 cut(s) 1151, 2248
TfiI GAWTC 5 cut(s) 483, 904, 1771, 2050, 2181
Tru1I TTAA 9 cut(s) 32, 551, 569, 863, 1506, 1530, 1760, 1887, 2754
Tru9I TTAA 9 cut(s) 32, 551, 569, 863, 1506, 1530, 1760, 1887, 2754
TseFI GTSAC 4 cut(s) 1261, 1276, 2670, 2917
TseI GCWGC 8 cut(s) 119, 1631, 1643, 1871, 2073, 2085, 2624, 2859
Tsp45I GTSAC 4 cut(s) 1261, 1276, 2670, 2917
TspGWI ACGGA 3 cut(s) 206, 1236, 2082
TspMI CCCGGG 1 cut(s) 2361
Van91I CCANNNNNTGG 2 cut(s) 251, 2560
VneI GTGCAC 1 cut(s) 2635
VpaK11BI GGWCC 6 cut(s) 89, 162, 215, 722, 807, 1228
VspI ATTAAT 2 cut(s) 569, 1760
XagI CCTNNNNNAGG 3 cut(s) 357, 2132, 2225
XapI RAATTY 7 cut(s) 58, 276, 309, 411, 1012, 1526, 1560
XceI RCATGY 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 269
XmaI CCCGGG 1 cut(s) 2361
XmiI GTMKAC 1 cut(s) 613
XmnI GAANNNNTTC 3 cut(s) 80, 878, 1818
XspI CTAG 4 cut(s) 1424, 1823, 2054, 2610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.