Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000088

Physical Location & Seq

Genomic Coordinates Forward (+)

39393044 .. 39399323

Gene Structure 6280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1257600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGTGGGAGTTCAACAAAAATATGGTGATGTTGTCAATTGGCGTCAATTCATTCTCTGGGCCCATCCCCAAGGAGCTTGGAAACCTTAAGGAGCTAAATGTGCTGAAGATCGGATCAAATTTCTTCTCTGGAACACTCCCTCCAGAACTTGGTAATTTAGTCAAGCTCGAGGAAATGTCAGTGGGCATCAATTCATTATCTGGGCCCATCCCCAAGGAGCTTGGAAACCTAAAGGAGCTAACTGTGCTGAGCCTTGGAACAAATAATTTCTCCGGAACACTCCCTCCAGAACTTGGTAATTTAGTCAAGCTCGAGTACCATTACATTGACAGCTGTGGACTCAGTGGTGAAATTCCTTCAACATTTGCCAAGCTCACCAACATGCAAACCCTCTGGGCATCGGACAGTCCGTACTCAGGAAAGATACCTGATTTCATAGGGAATTGGACACAACTCATTGAGTTGGATCTGAGTTTCAACAATTTGACAGGCCAACTCCCAAGTTCTTTGTTCACCATGAGTGCTCTTACATCCTTAGATTTATCTTACAATTTTTTATTAGGAAGCTTTCCTGAGTGGGGGACCAAAACATCGCAATTGTTCGTGTCCTTTTATCTTTCACCTTCATTTTACAGTTTAAATCACCAGAATATGTTCGGACAAAAAATTATCACTGAGATTCGTTTTCACCGTGCTACTTGCCTGCCTACTAAGAACTTAGCGGTCAACAACTTCACATTTGACAGTTCAAACATAGCTCTTCCTGGATTGAATTGCCTTCAGAGAAATTTTCCATGCAATCAAAATACCCCACGATGTAATCTGCTCTTATGTCACCCATCATTTACTATTTTAGCGCAACATCATTGTGGTGGAAAACAAATGACGGGAAGTGATGGCATATTGTATGAGACTGAAGACTCAGCTCTTGGCCCAGCAACATTCAGTATAACCAGTACATGGAAATGGGCTGTCAGCAATGCCGGTTTGTTTTCTGACAGAAAGGACCCATCGTTTCTGGTAAATGCCGATGCACAAGTCACCGGAACAGATGTGACCCCAGAGCTTTTCCAGACTTCAAGAATGTCCCCAGGATCACTGAGATACTATGGCCTGGGCCTTGAGAATGGGCCTTACACTGTAACATTGCACTTTGCAGAGACGGTTTATGAAAATCACACTTCGCAAAAATGGGAAAGTCTAGGACGGCGTGTATTTGATATCTATATTCAGGGTACCCGCAGGACGAAGGATTTTGACATATCGAAAGAGGCAGGTGGGGTTAGCCGTGCAGTTGTGAGAAGATTCAATGTTAGCGTGTCAGAGAATTATCTTGAAATTCATCTGTTCTGGGCTGGTAAAGGGACTTGTTGCATACCCAAACAAGGTGATTATGGCCCACTAATAGCAGCTGTCCATGTTGCTTCAGATTTTACACCAACAGTTTCCGAGCTTCCACCAACTACTCCAGGAAAGAAGAGCAGGACTGGGTTGATAGTCGGCATTGCAATTCCTGTTGGAGTTGCGAGCTTGCTATTAATATTTGCGATTCTATATATGAGGAGGAAAAAATCAAAAAAAGAGGATGATGAAGATATTTTAGGATTAGGCCTCCGGTCATATACTTTCAGTTATGCTGAATTGAGAGCTGCAACTGAAGATTTTAATCCTTCAAATAAGCTAGGAGAGGGAGGATATGGCTCTGTTTATAAGGGTACACTTTCTGATGGTAGAGTAGTGGCTGTGAAGCAACTTTCAGTATCATCTCACCAAGGGAAGAGTCAATTTGTATCTGAAATTGCTACCATATCTGCTGTGCAGCATCGGAATCTAGTGAAATTGTATGGATGCTGCATCGAAGGCAGCCAACGCATTTTGGTTTATGAGTATCTTGAAAACAAGAGCCTTGATCAGGCACTTTTTGGGACAAGTAACTTGCACCTTAGCTGGCCTACTCGATTCAATATATTGTTGGGAATAGCAAGAGGACTTGCTTACCTCCATGAGGAGTCAAGGCCAAGGATTGTACATCGAGATGTCAAAGCCAGTAATATTTTGCTCGACGCAGAACTCTCCCCAAAAATATCAGATTTTGGATTGGCAAAGCTTTATGATGACGAGAAAACCCACATCAGCACCCGGGTTGCAGGGACAATAGGCTATTTGGCACCAGAGTATGCAATGCGTGGACATTTGACAGAGAAGGCTGATGTGTTTGGTTTTGGAGTCGTTGCTTTGGAGATCCTCAGCGGGAGACCAAACTCTGACAATAACTTAGATCCAGAAAAGATTTATCTTCTTGAATGGACATGGACTCTACATGAAAACGACCAAATTCTGGGGCTCGTGGATCCGAGATTGACAGAATTTGACAAAACTGAAGGGACTAGACTGATAAGAGCAGCTCTCCTGTGCACGCAGGCATCACCGATGATGAGGCCATCTATGTCACGCGTGGTGGCAATGCTCTCTGGAGATATTGACATAGGCACTGTCATGATGATACCCCATCAACTGCATCCAAGCATAGTAATGACCGCCTCAACTATCAGCCCGAAGGTAGCAATGCAAGTGGTACTAAAACCCTCTGGGTTGACCCTGCGCCTTCTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

872

Amino Acids

96.06

Weight (kDa)

6.59

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	70 - 187	1.1e-08	Leucine-rich repeat region
Malectin	PF11721	289 - 472	4e-37	Malectin domain
Pkinase	PF00069	557 - 817	1.6e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	558 - 822	2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca	FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica	MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica	Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis	pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis	RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata	RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora	Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa	Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha	Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana	Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1710
AarI	CACCTGC	1 cut(s)	1265
Acc36I	ACCTGC	1 cut(s)	1265
Acc65I	GGTACC	1 cut(s)	1235
AccB1I	GGYRCC	2 cut(s)	1235, 2167
AccB7I	CCANNNNNTGG	4 cut(s)	149, 293, 960, 2338
AccII	CGCG	1 cut(s)	2454
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	4 cut(s)	722, 1240, 2250, 2538
AclWI	GGATC	7 cut(s)	121, 474, 1102, 2236, 2273, 2345, 2358
AcsI	RAATTY	6 cut(s)	118, 351, 787, 1338, 2334, 2366
AcuI	CTGAAG	6 cut(s)	125, 764, 936, 1410, 1677, 2400
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	7 cut(s)	317, 413, 958, 1237, 1717, 2028, 2577
AfiI	CCNNNNNNNGG	9 cut(s)	149, 293, 416, 578, 960, 1385, 1912, 2005, 2338
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	2452
AjnI	CCWGG	4 cut(s)	763, 1090, 1113, 1468
AloI	GAACNNNNNNTCC	4 cut(s)	124, 156, 268, 300
Alw21I	GWGCWC	2 cut(s)	526, 2417
Alw26I	GTCTC	3 cut(s)	905, 1154, 2248
Alw44I	GTGCAC	1 cut(s)	2413
AlwI	GGATC	7 cut(s)	121, 474, 1102, 2236, 2273, 2345, 2358
Ama87I	CYCGRG	3 cut(s)	167, 311, 2139
Aor13HI	TCCGGA	1 cut(s)	272
ApaI	GGGCCC	2 cut(s)	63, 207
ApaLI	GTGCAC	1 cut(s)	2413
ApeKI	GCWGC	6 cut(s)	1409, 1649, 1819, 1851, 1863, 2402
ApoI	RAATTY	6 cut(s)	118, 351, 787, 1338, 2334, 2366
AseI	ATTAAT	1 cut(s)	1538
Asp700I	GAANNNNTTC	1 cut(s)	653
Asp718I	GGTACC	1 cut(s)	1235
AspLEI	GCGC	2 cut(s)	859, 2604
AsuC2I	CCSGG	2 cut(s)	2140, 2141
AvaI	CYCGRG	3 cut(s)	167, 311, 2139
AvaII	GGWCC	2 cut(s)	582, 1006
BaeGI	GKGCMC	3 cut(s)	63, 207, 2417
BamHI	GGATCC	1 cut(s)	2350
BanI	GGYRCC	2 cut(s)	1235, 2167
BanII	GRGCYC	3 cut(s)	63, 207, 2346
BauI	CACGAG	1 cut(s)	2345
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	2 cut(s)	526, 2417
BbvCI	CCTCAGC	1 cut(s)	2246
BbvI	GCAGC	6 cut(s)	1421, 1636, 1831, 1838, 1875, 2414
BccI	CCATC	8 cut(s)	71, 215, 847, 890, 1018, 1721, 2449, 2517
BceAI	ACGGC	2 cut(s)	1223, 1272
BciT130I	CCWGG	4 cut(s)	765, 1092, 1115, 1470
BclI	TGATCA	1 cut(s)	1909
BcnI	CCSGG	2 cut(s)	2140, 2141
BcoDI	GTCTC	3 cut(s)	905, 1154, 2248
BfaI	CTAG	4 cut(s)	1202, 1682, 1832, 2388
BfrI	CTTAAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	1265
BisI	GCNGC	6 cut(s)	1410, 1650, 1820, 1852, 1864, 2403
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	6 cut(s)	1411, 1651, 1821, 1853, 1865, 2404
Bme1390I	CCNGG	4 cut(s)	765, 1092, 1115, 1470
Bme18I	GGWCC	2 cut(s)	582, 1006
BmeT110I	CYCGRG	3 cut(s)	167, 311, 2139
BmiI	GGNNCC	7 cut(s)	61, 205, 583, 1008, 1237, 2169, 2352
BmrFI	CCNGG	6 cut(s)	765, 1092, 1115, 1470, 2140, 2141
BmrI	ACTGGG	1 cut(s)	1497
BmsI	GCATC	8 cut(s)	195, 407, 1021, 1831, 1838, 1863, 2432, 2527
BmuI	ACTGGG	1 cut(s)	1497
BpiI	GAAGAC	1 cut(s)	924
BplI	GAGNNNNNCTC	2 cut(s)	2391, 2423
BpmI	CTGGAG	5 cut(s)	126, 270, 1452, 2493, 2594
Bpu10I	CCTNAGC	2 cut(s)	1943, 2246
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	1142
BpuMI	CCSGG	2 cut(s)	2140, 2141
BsaBI	GATNNNNATC	1 cut(s)	1665
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	2248
BsaJI	CCNNGG	8 cut(s)	69, 213, 253, 1090, 1114, 1771, 2018, 2139
BsaWI	WCCGGW	3 cut(s)	272, 1043, 1614
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 268, 298
Bsc4I	CCNNNNNNNGG	9 cut(s)	149, 293, 416, 578, 960, 1385, 1912, 2005, 2338
Bse118I	RCCGGY	1 cut(s)	983
Bse1I	ACTGG	4 cut(s)	954, 1492, 2046, 2611
Bse3DI	GCAATG	6 cut(s)	985, 1145, 1503, 2187, 2469, 2571
Bse8I	GATNNNNATC	1 cut(s)	1665
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	4 cut(s)	765, 1092, 1115, 1470
BseDI	CCNNGG	8 cut(s)	69, 213, 253, 1090, 1114, 1771, 2018, 2139
BseGI	GGATG	6 cut(s)	63, 207, 530, 1591, 1853, 2518
BseJI	GATNNNNATC	1 cut(s)	1665
BseLI	CCNNNNNNNGG	9 cut(s)	149, 293, 416, 578, 960, 1385, 1912, 2005, 2338
BseMI	GCAATG	6 cut(s)	985, 1145, 1503, 2187, 2469, 2571
BseMII	CTCAG	9 cut(s)	239, 355, 429, 461, 564, 666, 936, 1091, 2260
BseNI	ACTGG	2 cut(s)	954, 1492
BseRI	GAGGAG	2 cut(s)	1576, 2021
BseSI	GKGCMC	3 cut(s)	63, 207, 2417
BseXI	GCAGC	6 cut(s)	1421, 1636, 1831, 1838, 1875, 2414
BseYI	CCCAGC	1 cut(s)	934
BsgI	GTGCAG	2 cut(s)	1311, 1838
Bsh1236I	CGCG	1 cut(s)	2454
BshNI	GGYRCC	2 cut(s)	1235, 2167
BsiHKAI	GWGCWC	2 cut(s)	526, 2417
BsiHKCI	CYCGRG	3 cut(s)	167, 311, 2139
BsiSI	CCGG	5 cut(s)	273, 984, 1044, 1615, 2140
BslFI	GGGAC	6 cut(s)	595, 1072, 1378, 1939, 2164, 2398
BslI	CCNNNNNNNGG	9 cut(s)	149, 293, 416, 578, 960, 1385, 1912, 2005, 2338
BsmAI	GTCTC	3 cut(s)	905, 1154, 2248
BsmBI	CGTCTC	1 cut(s)	1154
BsmFI	GGGAC	6 cut(s)	595, 1072, 1378, 1939, 2164, 2398
Bso31I	GGTCTC	1 cut(s)	2248
BsoBI	CYCGRG	3 cut(s)	167, 311, 2139
Bsp120I	GGGCCC	2 cut(s)	59, 203
Bsp1286I	GDGCHC	5 cut(s)	63, 207, 526, 2346, 2417
Bsp13I	TCCGGA	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	2026
Bsp143I	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	4 cut(s)	722, 1240, 2250, 2538
BspCNI	CTCAG	9 cut(s)	240, 354, 428, 462, 565, 667, 935, 1092, 2259
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	2454
BspHI	TCATGA	1 cut(s)	2496
BspLI	GGNNCC	7 cut(s)	61, 205, 583, 1008, 1237, 2169, 2352
BspMI	ACCTGC	1 cut(s)	1265
BspPI	GGATC	7 cut(s)	121, 474, 1102, 2236, 2273, 2345, 2358
BspQI	GCTCTTC	2 cut(s)	765, 1472
BspT107I	GGYRCC	2 cut(s)	1235, 2167
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	2248
BsrDI	GCAATG	6 cut(s)	985, 1145, 1503, 2187, 2469, 2571
BsrFI	RCCGGY	1 cut(s)	983
BsrGI	TGTACA	1 cut(s)	2026
BsrI	ACTGG	4 cut(s)	954, 1492, 2046, 2611
BssAI	RCCGGY	1 cut(s)	983
BssECI	CCNNGG	8 cut(s)	69, 213, 253, 1090, 1114, 1771, 2018, 2139
BssMI	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	2345
BssT1I	CCWWGG	5 cut(s)	69, 213, 253, 1771, 2018
Bst2BI	CACGAG	1 cut(s)	2345
Bst2UI	CCWGG	4 cut(s)	765, 1092, 1115, 1470
Bst4CI	ACNGT	9 cut(s)	244, 407, 635, 692, 746, 1141, 1165, 1444, 2494
Bst6I	CTCTTC	3 cut(s)	765, 1472, 1772
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	2026
BstC8I	GCNNGC	6 cut(s)	704, 1528, 1532, 1949, 2417, 2421
BstENI	CCTNNNNNAGG	2 cut(s)	1910, 2003
BstF5I	GGATG	6 cut(s)	63, 207, 530, 1591, 1853, 2518
BstFNI	CGCG	1 cut(s)	2454
BstHHI	GCGC	2 cut(s)	859, 2604
BstKTI	GATC	8 cut(s)	111, 116, 469, 1097, 1912, 2244, 2281, 2353
BstMAI	GTCTC	3 cut(s)	905, 1154, 2248
BstMBI	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 244, 1860, 1869
BstNI	CCWGG	4 cut(s)	765, 1092, 1115, 1470
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	6 cut(s)	763, 1090, 1113, 1468, 2138, 2139
BstSLI	GKGCMC	3 cut(s)	63, 207, 2417
BstUI	CGCG	1 cut(s)	2454
BstV1I	GCAGC	6 cut(s)	1421, 1636, 1831, 1838, 1875, 2414
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	4 cut(s)	466, 2241, 2278, 2350
BstYI	RGATCY	4 cut(s)	466, 2241, 2278, 2350
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	6 cut(s)	63, 207, 530, 1591, 1853, 2518
BtsIMutI	CAGTG	6 cut(s)	186, 349, 672, 1097, 1137, 2490
BveI	ACCTGC	1 cut(s)	1265
Cac8I	GCNNGC	6 cut(s)	704, 1528, 1532, 1949, 2417, 2421
CciI	TCATGA	1 cut(s)	2496
CfoI	GCGC	2 cut(s)	859, 2604
Cfr10I	RCCGGY	1 cut(s)	983
Cfr9I	CCCGGG	1 cut(s)	2139
CseI	GACGC	2 cut(s)	31, 2072
Csp6I	GTAC	7 cut(s)	316, 412, 957, 1236, 1716, 2027, 2576
CspCI	CAANNNNNGTGG	2 cut(s)	2553, 2588
CviAII	CATG	9 cut(s)	382, 517, 795, 960, 1418, 2003, 2310, 2321, 2497
CviQI	GTAC	7 cut(s)	316, 412, 957, 1236, 1716, 2027, 2576
DpnI	GATC	8 cut(s)	110, 115, 468, 1096, 1911, 2243, 2280, 2352
DpnII	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
DraI	TTTAAA	1 cut(s)	639
Eam1104I	CTCTTC	3 cut(s)	765, 1472, 1772
EarI	CTCTTC	3 cut(s)	765, 1472, 1772
Eco130I	CCWWGG	5 cut(s)	69, 213, 253, 1771, 2018
Eco147I	AGGCCT	1 cut(s)	1611
Eco24I	GRGCYC	3 cut(s)	63, 207, 2346
Eco31I	GGTCTC	1 cut(s)	2248
Eco32I	GATATC	1 cut(s)	1222
Eco47I	GGWCC	2 cut(s)	582, 1006
Eco57I	CTGAAG	6 cut(s)	125, 764, 936, 1410, 1677, 2400
Eco88I	CYCGRG	3 cut(s)	167, 311, 2139
EcoNI	CCTNNNNNAGG	2 cut(s)	1910, 2003
EcoO109I	RGGNCCY	1 cut(s)	1006
EcoRII	CCWGG	4 cut(s)	763, 1090, 1113, 1468
EcoRV	GATATC	1 cut(s)	1222
EcoT14I	CCWWGG	5 cut(s)	69, 213, 253, 1771, 2018
EcoT38I	GRGCYC	3 cut(s)	63, 207, 2346
ErhI	CCWWGG	5 cut(s)	69, 213, 253, 1771, 2018
Esp3I	CGTCTC	1 cut(s)	1154
FaeI	CATG	9 cut(s)	385, 520, 798, 963, 1421, 2006, 2313, 2324, 2500
FaqI	GGGAC	6 cut(s)	595, 1072, 1378, 1939, 2164, 2398
FatI	CATG	9 cut(s)	381, 516, 794, 959, 1417, 2002, 2309, 2320, 2496
FauI	CCCGC	2 cut(s)	1247, 2243
FbaI	TGATCA	1 cut(s)	1909
Fnu4HI	GCNGC	6 cut(s)	1410, 1650, 1820, 1852, 1864, 2403
FokI	GGATG	6 cut(s)	50, 194, 517, 1598, 1860, 2505
FriOI	GRGCYC	3 cut(s)	63, 207, 2346
Fsp4HI	GCNGC	6 cut(s)	1410, 1650, 1820, 1852, 1864, 2403
FspBI	CTAG	4 cut(s)	1202, 1682, 1832, 2388
GlaI	GCGC	2 cut(s)	858, 2603
GluI	GCNGC	6 cut(s)	1410, 1650, 1820, 1852, 1864, 2403
GsaI	CCCAGC	1 cut(s)	938
GsuI	CTGGAG	5 cut(s)	126, 270, 1452, 2493, 2594
HapII	CCGG	5 cut(s)	273, 984, 1044, 1615, 2140
HgaI	GACGC	2 cut(s)	31, 2072
HhaI	GCGC	2 cut(s)	859, 2604
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	9 cut(s)	385, 520, 798, 963, 1421, 2006, 2313, 2324, 2500
Hin6I	GCGC	2 cut(s)	857, 2602
HinP1I	GCGC	2 cut(s)	857, 2602
HincII	GTYRAC	2 cut(s)	727, 2595
HindII	GTYRAC	2 cut(s)	727, 2595
HindIII	AAGCTT	2 cut(s)	565, 2105
HpaII	CCGG	5 cut(s)	273, 984, 1044, 1615, 2140
Hpy166II	GTNNAC	7 cut(s)	338, 513, 727, 1718, 2189, 2415, 2595
Hpy8I	GTNNAC	7 cut(s)	338, 513, 727, 1718, 2189, 2415, 2595
Hpy99I	CGWCG	1 cut(s)	2066
HpyCH4III	ACNGT	9 cut(s)	244, 407, 635, 692, 746, 1141, 1165, 1444, 2494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 244, 1860, 1869
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	9 cut(s)	385, 520, 798, 963, 1421, 2006, 2313, 2324, 2500
HspAI	GCGC	2 cut(s)	857, 2602
Kpn2I	TCCGGA	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	1239
Ksp22I	TGATCA	1 cut(s)	1909
Kzo9I	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
LguI	GCTCTTC	2 cut(s)	765, 1472
LmnI	GCTCC	4 cut(s)	73, 91, 217, 235
Lsp1109I	GCAGC	6 cut(s)	1421, 1636, 1831, 1838, 1875, 2414
LweI	GCATC	8 cut(s)	195, 407, 1021, 1831, 1838, 1863, 2432, 2527
MaeI	CTAG	4 cut(s)	1202, 1682, 1832, 2388
MaeIII	GTNAC	6 cut(s)	833, 1039, 1054, 1141, 1931, 2448
MalI	GATC	8 cut(s)	110, 115, 468, 1096, 1911, 2243, 2280, 2352
MboI	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
MfeI	CAATTG	2 cut(s)	36, 596
MflI	RGATCY	4 cut(s)	466, 2241, 2278, 2350
MhlI	GDGCHC	5 cut(s)	63, 207, 526, 2346, 2417
MluI	ACGCGT	1 cut(s)	2452
MlyI	GAGTC	6 cut(s)	333, 914, 1789, 2018, 2235, 2308
MmeI	TCCRAC	2 cut(s)	444, 1498
MroI	TCCGGA	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	4 cut(s)	87, 638, 1538, 1665
MslI	CAYNNNNRTG	7 cut(s)	380, 867, 870, 964, 2034, 2495, 2531
MspA1I	CMGCKG	3 cut(s)	333, 1412, 2250
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	5 cut(s)	273, 984, 1044, 1615, 2140
MspR9I	CCNGG	6 cut(s)	765, 1092, 1115, 1470, 2140, 2141
MunI	CAATTG	2 cut(s)	36, 596
MvaI	CCWGG	4 cut(s)	765, 1092, 1115, 1470
MvnI	CGCG	1 cut(s)	2454
MwoI	GCNNNNNNNGC	4 cut(s)	100, 244, 1860, 1869
NciI	CCSGG	2 cut(s)	2140, 2141
NdeII	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
NlaIII	CATG	9 cut(s)	385, 520, 798, 963, 1421, 2006, 2313, 2324, 2500
NlaIV	GGNNCC	7 cut(s)	61, 205, 583, 1008, 1237, 2169, 2352
NmuCI	GTSAC	4 cut(s)	833, 1039, 1054, 2448
NspI	RCATGY	1 cut(s)	385
PaeR7I	CTCGAG	2 cut(s)	167, 311
PagI	TCATGA	1 cut(s)	2496
PaqCI	CACCTGC	1 cut(s)	1265
PceI	AGGCCT	1 cut(s)	1611
PciSI	GCTCTTC	2 cut(s)	765, 1472
PcsI	WCGNNNNNNNCGW	2 cut(s)	407, 688
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	5 cut(s)	679, 1305, 1549, 1828, 1959
PflMI	CCANNNNNTGG	4 cut(s)	149, 293, 960, 2338
PfoI	TCCNGGA	2 cut(s)	763, 1468
PkrI	GCNGC	6 cut(s)	1411, 1651, 1821, 1853, 1865, 2404
PleI	GAGTC	6 cut(s)	333, 914, 1788, 2017, 2234, 2308
PpsI	GAGTC	6 cut(s)	333, 914, 1788, 2017, 2234, 2308
PpuMI	RGGWCCY	1 cut(s)	1006
PshBI	ATTAAT	1 cut(s)	1538
PsiI	TTATAA	1 cut(s)	1710
Psp5II	RGGWCCY	1 cut(s)	1006
Psp6I	CCWGG	4 cut(s)	763, 1090, 1113, 1468
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	4 cut(s)	763, 1090, 1113, 1468
PspN4I	GGNNCC	7 cut(s)	61, 205, 583, 1008, 1237, 2169, 2352
PspOMI	GGGCCC	2 cut(s)	59, 203
PspPPI	RGGWCCY	1 cut(s)	1006
PspXI	VCTCGAGB	2 cut(s)	167, 311
PsuI	RGATCY	4 cut(s)	466, 2241, 2278, 2350
PvuII	CAGCTG	2 cut(s)	333, 1412
RsaI	GTAC	7 cut(s)	317, 413, 958, 1237, 1717, 2028, 2577
RsaNI	GTAC	7 cut(s)	316, 412, 957, 1236, 1716, 2027, 2576
RseI	CAYNNNNRTG	7 cut(s)	380, 867, 870, 964, 2034, 2495, 2531
SapI	GCTCTTC	2 cut(s)	765, 1472
SaqAI	TTAA	4 cut(s)	87, 638, 1538, 1665
SatI	GCNGC	6 cut(s)	1410, 1650, 1820, 1852, 1864, 2403
Sau3AI	GATC	8 cut(s)	108, 113, 466, 1094, 1909, 2241, 2278, 2350
SchI	GAGTC	6 cut(s)	333, 914, 1789, 2018, 2235, 2308
ScrFI	CCNGG	6 cut(s)	765, 1092, 1115, 1470, 2140, 2141
SduI	GDGCHC	5 cut(s)	63, 207, 526, 2346, 2417
SfaNI	GCATC	8 cut(s)	195, 407, 1021, 1831, 1838, 1863, 2432, 2527
Sfr274I	CTCGAG	2 cut(s)	167, 311
SinI	GGWCC	2 cut(s)	582, 1006
SlaI	CTCGAG	2 cut(s)	167, 311
SmaI	CCCGGG	1 cut(s)	2141
SmiMI	CAYNNNNRTG	7 cut(s)	380, 867, 870, 964, 2034, 2495, 2531
SmlI	CTYRAG	4 cut(s)	86, 167, 311, 1121
SmoI	CTYRAG	4 cut(s)	86, 167, 311, 1121
SseBI	AGGCCT	1 cut(s)	1611
SsiI	CCGC	4 cut(s)	722, 1240, 2250, 2538
SspI	AATATT	2 cut(s)	1542, 2053
SspMI	CTAG	4 cut(s)	1202, 1682, 1832, 2388
StuI	AGGCCT	1 cut(s)	1611
StyD4I	CCNGG	6 cut(s)	763, 1090, 1113, 1468, 2138, 2139
StyI	CCWWGG	5 cut(s)	69, 213, 253, 1771, 2018
TaaI	ACNGT	9 cut(s)	244, 407, 635, 692, 746, 1141, 1165, 1444, 2494
TaqI	TCGA	7 cut(s)	168, 312, 1265, 1857, 1957, 2032, 2061
TatI	WGTACW	2 cut(s)	956, 2026
TfiI	GAWTC	5 cut(s)	679, 1305, 1549, 1828, 1959
Tru1I	TTAA	4 cut(s)	87, 638, 1538, 1665
Tru9I	TTAA	4 cut(s)	87, 638, 1538, 1665
TscAI	CASTG	6 cut(s)	186, 349, 679, 1104, 1144, 2497
TseFI	GTSAC	4 cut(s)	833, 1039, 1054, 2448
TseI	GCWGC	6 cut(s)	1409, 1649, 1819, 1851, 1863, 2402
Tsp45I	GTSAC	4 cut(s)	833, 1039, 1054, 2448
TspDTI	ATGAA	8 cut(s)	39, 183, 424, 615, 1185, 1331, 1605, 2337
TspGWI	ACGGA	1 cut(s)	399
TspMI	CCCGGG	1 cut(s)	2139
TspRI	CASTG	6 cut(s)	186, 349, 679, 1104, 1144, 2497
Van91I	CCANNNNNTGG	4 cut(s)	149, 293, 960, 2338
Vha464I	CTTAAG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	2413
VpaK11BI	GGWCC	2 cut(s)	582, 1006
VspI	ATTAAT	1 cut(s)	1538
XagI	CCTNNNNNAGG	2 cut(s)	1910, 2003
XapI	RAATTY	6 cut(s)	118, 351, 787, 1338, 2334, 2366
XceI	RCATGY	1 cut(s)	385
XhoI	CTCGAG	2 cut(s)	167, 311
XmaI	CCCGGG	1 cut(s)	2139
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	4 cut(s)	1202, 1682, 1832, 2388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.