RchiOBHm_Chr2g0114821
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000088
Physical Location & Seq
Forward (+)
26678434 .. 26686394
7961 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48803

Sequence Viewer

Length: 3147 bp
ATGTTTGGCGCGGTCTTTTTGTTTTGTTTTGCAAGAGTTTTGAATTCAGTGTTTGAGAAATGGAATATTCGGGCCGATCCGAAGCAATGGAACACAACCGGAGACCCATGCAGTGGAGCTGCCATAGACTCCACCAGTCACTCCACCAAATTTGATGACCCCGCTTACAACCCCTTCATCATATGTGACTGCTCTTATCAATCCGGCACCATTTGCCACATTACACAACTGAAAGTTCAGGACCTGGAAGTTGTTGGTGTAATTCCAGACGAGTTATGGAGTTTGACTTCCCTCACCAATCTGTATGCTTTCTCTGAACTCGTGCCCTTGAGTTGGACTCAGTTTAGTTACCCAATTTGTGATATTTCTCCCATGCATTGTAGGAATTTGGAAAGGAATTGCCTGACAGGACCTCTCTCTGCAGCCATTGCAAATCTAACTGGCTTGCAATATTTTACTATTGGCATCAACGATTTATCAGGCGAGATACCAAAAGAAATTGGACAACTTACTGAACTGAGATCATTGTCTTTTGGGAGAAACAACTTTTCGGGTTCTCTGCCATCTGAGCTAGGGAATTTATTAAAATTACAACAGCTTTACGTATCTAATTGTGGAGTTAGCGGTGAGATTCCACCAACTTTTGCTAATCTACAAAACTTGGAGATTTTTTGGGCTAGAGGTGTTGAACTCTCTGGCAGGATACCAGACTTCATAGGGAATTTCTCAAAGCTTACTTCCTTGAGGTTTCAAGGAAACTCTTTTGAAGGTCCTATACCATTTGCATTTTCCAATCTGACATCTATTAAAGAGCTACACATTAGTGATTTGTCAAATGCCAATGGGAGCTCTTCTCTTGCGTTTATTGAGAATATGAAGGCTCTAAGTATCTTGGTGCTGAGGAATAACAATATTTCTGATTCAATTCCTTCCGATTTTGGATTATACCAAAGTTTGTCTCAGCTGGATTTGAGCTTCAACAATTTAACTGGACAGATACCAGACTCACTCTTTAATTTGAGTTCTCTCTCCATCTTGTTTCTTGGAAACAATAAGTTGAATGGCACCCTTCCCGAGTATAAGACTGCATCTCTTCTCAATATAGATTTGTCGTACAATTATCTAGATGGGAGCATTCCTTCTTGGGTCAAAGAAGAAAAATTACAGCTTAATTTAGTTGCCAACAACTTCAGCATAGAAAGTTTACAGAGCAGTGGTCTTCCTTCAGGGTTGGCTTGCCTTCAAAGAAACTTTCCTTGCAATCGTGGCCCTGGAATCTATTATAATTTTGGGATTAATTGTGGAGGACCTGAGATTACGTCTTCCTCCGATGGGATTGTGTATGAGAAGGAAAATGAACCCCTTGGACCAGCTTCATATTTTGTGACAGGCACAAGCAGATGGGGAGTTAGCAATGTCGGATATTTCGCTGGCAGTACCAATCCTCAGTATACAAGTTTCTCCTTATCTCAATTCACAAATACTTTTGATTCTGTGCTATTCCAGACTGCAAGGCTCTCTGCTTCATCAATTAGATACTTTGGCTTGGGGCTTCAGAATGGTAACTACACCGTGAACCTCAAGTTTGCAGAACATGTCATTCTGGCTGCTACTACCGGGAAATTTCTTGGGAAACGTCTTTTTGATATTTATATCCAGGGCATTCTGGTATCAAAGAATTTTGATATACTAAAGGAGGCAGGTATGTCATCTTTCGGAGCTGTTCAGAAGCCATACACGGCTCATGTTTCGGAGAACTACCTTGAAATCCATCTCTTTTGGGCTGGAAAGGGGACTTGCTGTATACCTGAGCGGGGTACTTACGGACCTGCTATTGCAGCCATCAGTGCTACACCGGATTTCATACCTACTGTCAGTAACAGCCTTCCAACTAGTAAGAAGAATAGAACTGGGCTGATTGTTGGGATTGTTGTGGGTGGTGGAGTAATTTTGGTTCTGTTGGTTGTGGCTTTTTATCTTATTCAAAGAAGAAAAAGGTCTGACCCTGATGATGACGAAGAGCTGTATGGGATAGATGTTGGACCACTTACTTTCAGTTATCCTGAACTAAAGACAGCTACAAACGACTTTGATGAAGCTCATAAGCTTGGAGAGGGAGGATTTGGACCTGTCTATAGAGGAACACTTAGTGATGGAAGAGTAATTGCTGTGAAGCAATTGTCTGCTGCATCCCACCAAGGAAAGAACCAGTTTGTAACTGAGATTGCAACTATATCTGCTGTGCAACACAATAACCTCGTAAAGTTGTACGGATTCTGCACTGAGGGAGTTAAACGGCTCCTTGTCTATGAGTATCTGGAGAACAACAGTCTTGATCAAGCATTATTTGGAGAGAGACGTTTAAATCTTGATTGGTCAACACGTTTTAATATATGCTTGGGCATAGCTAGAGGTTTAACTTATCTTCATGAAGAATCAAGAGTTCGAATTGTACACAGAGATGTGAAGGCCAGTAATATTCTGCTTGACACTAATCTCACCCCCAAGATATCGGATTTTGGTTTGGCTAAGCTTTTTGATGAGAAAAAGACCCACATAAGTACCCGTGTTGCGGGAACAATTGGGTATCTTGCACCGGAATATGCCATGCGTGGACACCTTACAGAGAAGACTGATGTCTTTGCCTTTGGTGTTGTGGCTCTTGAAATTGTCAGTGGTAGGCCAAATTCTGATCCGAGTTTGGGTGAAGAAATGACTTATCTTCTCGAATGGGCTTGGCAATTGCATGAAAACAGACGGGCAGTTGAACTAGTGGATTCTAGATTATCTGAATTCAATGAGGAAGAAGCACAACGAATAATCAAAATAGGACTTTTGTGCACTCAAACATCACCAATGCTACGACCATCCATGTCCCGTGTAGTGGGAATGCTTTCAGGAGATATGGAAGTGACAACAGTAACTTCAAAGCCCGGTTACTTGACAGACTGGAAATTTGATGATTTAACTACAGTCACCAGCCTAACAAAACTGGACGGTGTAAGTATTGTCACCAACGTGACTGATATGACGACTAGAGGAACGGATTTTAGCTTCAACAACTCATTAGCAAGTACAAGCATAATGGGGCAATCACCTCCTAATGCCATTCATTCTATGTCTAAAAATAATGTTGATGGTCGGTGA

Protein Analysis

1048

Amino Acids

115.23

Weight (kDa)

5.45

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 142 - 249 4.2e-10 Leucine-rich repeat region
Malectin PF11721 430 - 615 2.4e-38 Malectin domain
Pkinase PF00069 698 - 961 3.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 701 - 963 2.1e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1284
Acc36I ACCTGC 2 cut(s) 1691, 1837
AccB1I GGYRCC 2 cut(s) 206, 1064
AccB7I CCANNNNNTGG 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 1813
AccI GTMKAC 2 cut(s) 1451, 1804
AccII CGCG 1 cut(s) 11
AciI CCGC 5 cut(s) 11, 162, 624, 1813, 2573
AclWI GGATC 2 cut(s) 71, 2687
AcuI CTGAAG 3 cut(s) 1174, 1209, 1538
AdeI CACNNNGTG 1 cut(s) 2150
AfaI GTAC 7 cut(s) 1115, 1438, 1819, 2270, 2454, 2563, 3076
AfiI CCNNNNNNNGG 7 cut(s) 113, 333, 1332, 1814, 2572, 2702, 2884
AflIII ACRYGT 2 cut(s) 1594, 2381
AhlI ACTAGT 2 cut(s) 1892, 2770
AjnI CCWGG 3 cut(s) 243, 1270, 1656
AleI CACNNNNGTG 2 cut(s) 822, 3017
Alw21I GWGCWC 2 cut(s) 851, 2843
Alw26I GTCTC 3 cut(s) 96, 963, 2350
Alw44I GTGCAC 1 cut(s) 2839
AlwI GGATC 2 cut(s) 71, 2687
AlwNI CAGNNNCTG 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 1073
AoxI GGCC 4 cut(s) 72, 1267, 2469, 2681
ApaLI GTGCAC 1 cut(s) 2839
ApeKI GCWGC 5 cut(s) 119, 422, 1607, 1838, 2186
ArsI GACNNNNNNTTYG 2 cut(s) 2939, 2971
AseI ATTAAT 1 cut(s) 1296
Asp700I GAANNNNTTC 1 cut(s) 2893
AspLEI GCGC 1 cut(s) 11
AsuC2I CCSGG 2 cut(s) 1618, 2934
AsuHPI GGTGA 8 cut(s) 286, 638, 2491, 2717, 2844, 2968, 3004, 3087
AsuII TTCGAA 1 cut(s) 2446
AvaI CYCGRG 1 cut(s) 1073
AvaII GGWCC 8 cut(s) 241, 410, 770, 1307, 1367, 1826, 2042, 2126
BaeGI GKGCMC 2 cut(s) 327, 2843
BaeI ACNNNNGTAYC 2 cut(s) 2545, 2578
BanI GGYRCC 2 cut(s) 206, 1064
BanII GRGCYC 1 cut(s) 851
BarI GAAGNNNNNNTAC 4 cut(s) 759, 791, 1146, 1178
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 3 cut(s) 1211, 1314, 2636
Bbv12I GWGCWC 2 cut(s) 851, 2843
BbvCI CCTCAGC 1 cut(s) 899
BbvI GCAGC 5 cut(s) 106, 434, 1594, 1850, 2173
BceAI ACGGC 2 cut(s) 1755, 2312
BciT130I CCWGG 3 cut(s) 245, 1272, 1658
BciVI GTATCC 1 cut(s) 696
BclI TGATCA 1 cut(s) 2335
BcnI CCSGG 2 cut(s) 1618, 2934
BcoDI GTCTC 3 cut(s) 96, 963, 2350
BcuI ACTAGT 2 cut(s) 1892, 2770
BfaI CTAG 8 cut(s) 572, 678, 1124, 1893, 2409, 2771, 2781, 3036
BfmI CTRYAG 3 cut(s) 420, 2134, 2970
BfuAI ACCTGC 2 cut(s) 1691, 1837
BfuI GTATCC 1 cut(s) 696
BisI GCNGC 5 cut(s) 120, 423, 1608, 1839, 2187
BlpI GCTNAGC 1 cut(s) 2529
BlsI GCNGC 5 cut(s) 121, 424, 1609, 1840, 2188
Bme1390I CCNGG 5 cut(s) 245, 1272, 1618, 1658, 2934
Bme18I GGWCC 8 cut(s) 241, 410, 770, 1307, 1367, 1826, 2042, 2126
BmeT110I CYCGRG 1 cut(s) 1073
BmiI GGNNCC 3 cut(s) 208, 1066, 2300
BmrFI CCNGG 5 cut(s) 245, 1272, 1618, 1658, 2934
BmrI ACTGGG 1 cut(s) 1920
BmsI GCATC 3 cut(s) 474, 1097, 2198
BmuI ACTGGG 1 cut(s) 1920
BoxI GACNNNNGTC 1 cut(s) 2636
BpiI GAAGAC 3 cut(s) 1211, 1314, 2636
BplI GAGNNNNNCTC 4 cut(s) 322, 354, 838, 870
BpmI CTGGAG 1 cut(s) 2339
Bpu10I CCTNAGC 2 cut(s) 899, 1809
Bpu1102I GCTNAGC 1 cut(s) 2529
Bpu14I TTCGAA 1 cut(s) 2446
BpuEI CTTGAG 3 cut(s) 349, 763, 1565
BpuMI CCSGG 2 cut(s) 1618, 2934
BsaAI YACGTR 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 4 cut(s) 1270, 1363, 1657, 2197
BsaWI WCCGGW 3 cut(s) 98, 1855, 2596
Bsc4I CCNNNNNNNGG 7 cut(s) 113, 333, 1332, 1814, 2572, 2702, 2884
Bse1I ACTGG 8 cut(s) 135, 445, 994, 1915, 2209, 2472, 2954, 2997
Bse3DI GCAATG 3 cut(s) 92, 426, 1420
BseBI CCWGG 3 cut(s) 245, 1272, 1658
BseDI CCNNGG 4 cut(s) 1270, 1363, 1657, 2197
BseGI GGATG 2 cut(s) 2189, 2867
BseLI CCNNNNNNNGG 7 cut(s) 113, 333, 1332, 1814, 2572, 2702, 2884
BseMI GCAATG 3 cut(s) 92, 426, 1420
BseNI ACTGG 8 cut(s) 135, 445, 994, 1915, 2209, 2472, 2954, 2997
BseSI GKGCMC 2 cut(s) 327, 2843
BseXI GCAGC 5 cut(s) 106, 434, 1594, 1850, 2173
BsgI GTGCAG 1 cut(s) 2263
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 4 cut(s) 74, 1269, 2471, 2683
BshNI GGYRCC 2 cut(s) 206, 1064
BsiHKAI GWGCWC 2 cut(s) 851, 2843
BsiHKCI CYCGRG 1 cut(s) 1073
BsiSI CCGG 6 cut(s) 99, 204, 1617, 1856, 2597, 2934
BslFI GGGAC 2 cut(s) 1807, 2860
BslI CCNNNNNNNGG 7 cut(s) 113, 333, 1332, 1814, 2572, 2702, 2884
BsmAI GTCTC 3 cut(s) 96, 963, 2350
BsmBI CGTCTC 1 cut(s) 2350
BsmFI GGGAC 2 cut(s) 1807, 2860
BsmI GAATGC 3 cut(s) 1134, 1662, 2895
BsnI GGCC 4 cut(s) 74, 1269, 2471, 2683
Bso31I GGTCTC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 1073
Bsp119I TTCGAA 1 cut(s) 2446
Bsp1286I GDGCHC 3 cut(s) 327, 851, 2843
Bsp1407I TGTACA 1 cut(s) 2452
Bsp143I GATC 4 cut(s) 76, 521, 2335, 2692
Bsp1720I GCTNAGC 1 cut(s) 2529
BspACI CCGC 5 cut(s) 11, 162, 624, 1813, 2573
BspANI GGCC 4 cut(s) 74, 1269, 2471, 2683
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 2428
BspLI GGNNCC 3 cut(s) 208, 1066, 2300
BspMAI CTGCAG 1 cut(s) 424
BspMI ACCTGC 2 cut(s) 1691, 1837
BspPI GGATC 2 cut(s) 71, 2687
BspQI GCTCTTC 2 cut(s) 856, 2013
BspT104I TTCGAA 1 cut(s) 2446
BspT107I GGYRCC 2 cut(s) 206, 1064
BspTNI GGTCTC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 1813
BsrDI GCAATG 3 cut(s) 92, 426, 1420
BsrGI TGTACA 1 cut(s) 2452
BsrI ACTGG 8 cut(s) 135, 445, 994, 1915, 2209, 2472, 2954, 2997
BssECI CCNNGG 4 cut(s) 1270, 1363, 1657, 2197
BssMI GATC 4 cut(s) 76, 521, 2335, 2692
BssNAI GTATAC 2 cut(s) 1452, 1805
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 1363, 2197
Bst1107I GTATAC 2 cut(s) 1452, 1805
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 3 cut(s) 245, 1272, 1658
Bst4CI ACNGT 6 cut(s) 1573, 1873, 2330, 2920, 2974, 2999
Bst6I CTCTTC 4 cut(s) 856, 1098, 2013, 2152
BstAPI GCANNNNNTGC 2 cut(s) 213, 428
BstAUI TGTACA 1 cut(s) 2452
BstBAI YACGTR 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 2446
BstC8I GCNNGC 3 cut(s) 446, 1237, 1432
BstF5I GGATG 2 cut(s) 2189, 2867
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 4 cut(s) 79, 524, 2338, 2695
BstMAI GTCTC 3 cut(s) 96, 963, 2350
BstMBI GATC 4 cut(s) 76, 521, 2335, 2692
BstMWI GCNNNNNNNGC 6 cut(s) 213, 428, 568, 1266, 1838, 1847
BstNI CCWGG 3 cut(s) 245, 1272, 1658
BstNSI RCATGY 1 cut(s) 1598
BstPAI GACNNNNGTC 1 cut(s) 2636
BstSCI CCNGG 5 cut(s) 243, 1270, 1616, 1656, 2932
BstSFI CTRYAG 3 cut(s) 420, 2134, 2970
BstSLI GKGCMC 2 cut(s) 327, 2843
BstSNI TACGTA 1 cut(s) 604
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 5 cut(s) 106, 434, 1594, 1850, 2173
BstV2I GAAGAC 3 cut(s) 1211, 1314, 2636
BstZ17I GTATAC 2 cut(s) 1452, 1805
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 4 cut(s) 74, 1269, 2471, 2683
BtsCI GGATG 2 cut(s) 2189, 2867
BtsI GCAGTG 2 cut(s) 118, 1219
BtsIMutI CAGTG 6 cut(s) 54, 118, 1219, 1852, 2280, 2680
BveI ACCTGC 2 cut(s) 1691, 1837
Cac8I GCNNGC 3 cut(s) 446, 1237, 1432
CaiI CAGNNNCTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 2428
CfoI GCGC 1 cut(s) 11
Csp6I GTAC 7 cut(s) 1114, 1437, 1818, 2269, 2453, 2562, 3075
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 8 cut(s) 108, 373, 1595, 1745, 2429, 2608, 2747, 2872
CviQI GTAC 7 cut(s) 1114, 1437, 1818, 2269, 2453, 2562, 3075
DpnI GATC 4 cut(s) 78, 523, 2337, 2694
DpnII GATC 4 cut(s) 76, 521, 2335, 2692
DraI TTTAAA 1 cut(s) 2364
DraIII CACNNNGTG 1 cut(s) 2150
Eam1104I CTCTTC 4 cut(s) 856, 1098, 2013, 2152
EarI CTCTTC 4 cut(s) 856, 1098, 2013, 2152
Ecl136II GAGCTC 1 cut(s) 849
Eco105I TACGTA 1 cut(s) 604
Eco130I CCWWGG 2 cut(s) 1363, 2197
Eco24I GRGCYC 1 cut(s) 851
Eco31I GGTCTC 1 cut(s) 96
Eco32I GATATC 1 cut(s) 2511
Eco47I GGWCC 8 cut(s) 241, 410, 770, 1307, 1367, 1826, 2042, 2126
Eco53kI GAGCTC 1 cut(s) 849
Eco57I CTGAAG 3 cut(s) 1174, 1209, 1538
Eco88I CYCGRG 1 cut(s) 1073
EcoICRI GAGCTC 1 cut(s) 849
EcoO109I RGGNCCY 4 cut(s) 241, 410, 770, 1307
EcoRI GAATTC 2 cut(s) 43, 2792
EcoRII CCWGG 3 cut(s) 243, 1270, 1656
EcoRV GATATC 1 cut(s) 2511
EcoT14I CCWWGG 2 cut(s) 1363, 2197
EcoT22I ATGCAT 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 851
ErhI CCWWGG 2 cut(s) 1363, 2197
Esp3I CGTCTC 1 cut(s) 2350
FaeI CATG 8 cut(s) 111, 376, 1598, 1748, 2432, 2611, 2750, 2875
FaqI GGGAC 2 cut(s) 1807, 2860
FatI CATG 8 cut(s) 107, 372, 1594, 1744, 2428, 2607, 2746, 2871
FauI CCCGC 3 cut(s) 169, 1806, 2566
FauNDI CATATG 1 cut(s) 182
FbaI TGATCA 1 cut(s) 2335
FblI GTMKAC 2 cut(s) 1451, 1804
Fnu4HI GCNGC 5 cut(s) 120, 423, 1608, 1839, 2187
FokI GGATG 2 cut(s) 2176, 2854
FriOI GRGCYC 1 cut(s) 851
Fsp4HI GCNGC 5 cut(s) 120, 423, 1608, 1839, 2187
FspBI CTAG 8 cut(s) 572, 678, 1124, 1893, 2409, 2771, 2781, 3036
GlaI GCGC 1 cut(s) 10
GluI GCNGC 5 cut(s) 120, 423, 1608, 1839, 2187
GsuI CTGGAG 1 cut(s) 2339
HaeIII GGCC 4 cut(s) 74, 1269, 2471, 2683
HapII CCGG 6 cut(s) 99, 204, 1617, 1856, 2597, 2934
HhaI GCGC 1 cut(s) 11
Hin1II CATG 8 cut(s) 111, 376, 1598, 1748, 2432, 2611, 2750, 2875
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 2379
HindII GTYRAC 1 cut(s) 2379
HindIII AAGCTT 3 cut(s) 731, 2105, 2531
HpaII CCGG 6 cut(s) 99, 204, 1617, 1856, 2597, 2934
HphI GGTGA 8 cut(s) 286, 638, 2491, 2717, 2844, 2968, 3004, 3087
Hpy166II GTNNAC 8 cut(s) 1205, 1452, 1576, 1805, 2379, 2455, 2615, 2841
Hpy8I GTNNAC 8 cut(s) 1205, 1452, 1576, 1805, 2379, 2455, 2615, 2841
HpyCH4III ACNGT 6 cut(s) 1573, 1873, 2330, 2920, 2974, 2999
HpyCH4IV ACGT 6 cut(s) 603, 1319, 1636, 2359, 2383, 3018
HpyF10VI GCNNNNNNNGC 6 cut(s) 213, 428, 568, 1266, 1838, 1847
HpySE526I ACGT 6 cut(s) 603, 1319, 1636, 2359, 2383, 3018
Hsp92II CATG 8 cut(s) 111, 376, 1598, 1748, 2432, 2611, 2750, 2875
HspAI GCGC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 2335
Kzo9I GATC 4 cut(s) 76, 521, 2335, 2692
LguI GCTCTTC 2 cut(s) 856, 2013
LmnI GCTCC 5 cut(s) 116, 846, 1131, 1718, 2304
Lsp1109I GCAGC 5 cut(s) 106, 434, 1594, 1850, 2173
LweI GCATC 3 cut(s) 474, 1097, 2198
MaeI CTAG 8 cut(s) 572, 678, 1124, 1893, 2409, 2771, 2781, 3036
MaeII ACGT 6 cut(s) 603, 1319, 1636, 2359, 2383, 3018
MalI GATC 4 cut(s) 78, 523, 2337, 2694
MbiI CCGCTC 1 cut(s) 1813
MboI GATC 4 cut(s) 76, 521, 2335, 2692
MfeI CAATTG 3 cut(s) 2177, 2580, 2741
MhlI GDGCHC 3 cut(s) 327, 851, 2843
MlyI GAGTC 3 cut(s) 122, 331, 998
MmeI TCCRAC 4 cut(s) 314, 1399, 1913, 2020
Mph1103I ATGCAT 1 cut(s) 378
MroXI GAANNNNTTC 1 cut(s) 2893
MslI CAYNNNNRTG 3 cut(s) 822, 2460, 3017
MspA1I CMGCKG 1 cut(s) 964
MspI CCGG 6 cut(s) 99, 204, 1617, 1856, 2597, 2934
MspR9I CCNGG 5 cut(s) 245, 1272, 1618, 1658, 2934
MunI CAATTG 3 cut(s) 2177, 2580, 2741
Mva1269I GAATGC 3 cut(s) 1134, 1662, 2895
MvaI CCWGG 3 cut(s) 245, 1272, 1658
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 6 cut(s) 213, 428, 568, 1266, 1838, 1847
NciI CCSGG 2 cut(s) 1618, 2934
NdeI CATATG 1 cut(s) 182
NdeII GATC 4 cut(s) 76, 521, 2335, 2692
NlaIII CATG 8 cut(s) 111, 376, 1598, 1748, 2432, 2611, 2750, 2875
NlaIV GGNNCC 3 cut(s) 208, 1066, 2300
NmuCI GTSAC 7 cut(s) 137, 185, 1384, 2911, 2974, 3010, 3019
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 1598
NspV TTCGAA 1 cut(s) 2446
OliI CACNNNNGTG 2 cut(s) 822, 3017
PagI TCATGA 1 cut(s) 2428
PciI ACATGT 1 cut(s) 1594
PciSI GCTCTTC 2 cut(s) 856, 2013
PctI GAATGC 3 cut(s) 1134, 1662, 2895
PdmI GAANNNNTTC 1 cut(s) 2893
PfeI GAWTC 7 cut(s) 631, 920, 1275, 1490, 2274, 2435, 2777
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 5 cut(s) 121, 424, 1609, 1840, 2188
PleI GAGTC 3 cut(s) 122, 331, 998
PpsI GAGTC 3 cut(s) 122, 331, 998
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 4 cut(s) 241, 410, 770, 1307
PscI ACATGT 1 cut(s) 1594
PshAI GACNNNNGTC 1 cut(s) 2636
PshBI ATTAAT 1 cut(s) 1296
PsiI TTATAA 1 cut(s) 1284
Psp124BI GAGCTC 1 cut(s) 851
Psp5II RGGWCCY 4 cut(s) 241, 410, 770, 1307
Psp6I CCWGG 3 cut(s) 243, 1270, 1656
PspGI CCWGG 3 cut(s) 243, 1270, 1656
PspN4I GGNNCC 3 cut(s) 208, 1066, 2300
PspPPI RGGWCCY 4 cut(s) 241, 410, 770, 1307
PsrI GAACNNNNNNTAC 2 cut(s) 1938, 1970
PstI CTGCAG 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 964
RsaI GTAC 7 cut(s) 1115, 1438, 1819, 2270, 2454, 2563, 3076
RsaNI GTAC 7 cut(s) 1114, 1437, 1818, 2269, 2453, 2562, 3075
RseI CAYNNNNRTG 3 cut(s) 822, 2460, 3017
SacI GAGCTC 1 cut(s) 851
SapI GCTCTTC 2 cut(s) 856, 2013
SatI GCNGC 5 cut(s) 120, 423, 1608, 1839, 2187
Sau3AI GATC 4 cut(s) 76, 521, 2335, 2692
SchI GAGTC 3 cut(s) 122, 331, 998
ScrFI CCNGG 5 cut(s) 245, 1272, 1618, 1658, 2934
SduI GDGCHC 3 cut(s) 327, 851, 2843
SfaNI GCATC 3 cut(s) 474, 1097, 2198
SfcI CTRYAG 3 cut(s) 420, 2134, 2970
SfuI TTCGAA 1 cut(s) 2446
SinI GGWCC 8 cut(s) 241, 410, 770, 1307, 1367, 1826, 2042, 2126
SmiMI CAYNNNNRTG 3 cut(s) 822, 2460, 3017
SmlI CTYRAG 3 cut(s) 328, 742, 1580
SmoI CTYRAG 3 cut(s) 328, 742, 1580
SnaBI TACGTA 1 cut(s) 604
SpeI ACTAGT 2 cut(s) 1892, 2770
SsiI CCGC 5 cut(s) 11, 162, 624, 1813, 2573
SspI AATATT 4 cut(s) 67, 452, 913, 2479
SspMI CTAG 8 cut(s) 572, 678, 1124, 1893, 2409, 2771, 2781, 3036
SstI GAGCTC 1 cut(s) 851
StyD4I CCNGG 5 cut(s) 243, 1270, 1616, 1656, 2932
StyI CCWWGG 2 cut(s) 1363, 2197
TaaI ACNGT 6 cut(s) 1573, 1873, 2330, 2920, 2974, 2999
TaiI ACGT 6 cut(s) 606, 1322, 1639, 2362, 2386, 3021
TaqI TCGA 2 cut(s) 2446, 2727
TatI WGTACW 2 cut(s) 2452, 3074
TfiI GAWTC 7 cut(s) 631, 920, 1275, 1490, 2274, 2435, 2777
TscAI CASTG 6 cut(s) 54, 118, 1219, 1852, 2287, 2680
TseFI GTSAC 7 cut(s) 137, 185, 1384, 2911, 2974, 3010, 3019
TseI GCWGC 5 cut(s) 119, 422, 1607, 1838, 2186
Tsp45I GTSAC 7 cut(s) 137, 185, 1384, 2911, 2974, 3010, 3019
TspGWI ACGGA 3 cut(s) 1839, 2286, 3059
TspRI CASTG 6 cut(s) 54, 118, 1219, 1852, 2287, 2680
Van91I CCANNNNNTGG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 2839
VpaK11BI GGWCC 8 cut(s) 241, 410, 770, 1307, 1367, 1826, 2042, 2126
VspI ATTAAT 1 cut(s) 1296
XbaI TCTAGA 2 cut(s) 1123, 2780
XceI RCATGY 1 cut(s) 1598
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmiI GTMKAC 2 cut(s) 1451, 1804
XmnI GAANNNNTTC 1 cut(s) 2893
XspI CTAG 8 cut(s) 572, 678, 1124, 1893, 2409, 2771, 2781, 3036
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.