Rroxscaffold_1G00059040

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000088
Physical Location & Seq
Reverse (-)
81033804 .. 81037862
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059040.1

Sequence Viewer

Length: 1665 bp
ATGAATATCTTCGCCACCACCGACGCATCTTCTATGACCTCACCGCCGTCGCTTCTCGTTGGAGGTTCCAAGAGCCGGCGGCGAGAGGTTGTTGTTGTCGGCGCGGGCCCGGGTTGTTTGAGGAGGGAGGAGATTTGGGAGGATGTGTGGGGGAGGGAACGGGCGGTGGAGGAGAGGGAGGGGAGGATGGTGAAAGGGATTGGATTGCTGCTTGCTTGGGGTTTGGAGGAGGTTGAGGATGAGGAGTCTAACGAGGTTGAGGCTTTGGTGGTGGAGGTTCGGGCGGTTGAGCGGTGGTGTCTTACGGGATGGACATTGCCGGTGTTGAATGTTGATAGAGCTCGGATCCTGGGCTCCAGTTTCTTTTGGACTAAGCCCACTGGTCCTCCAAGTAGCCTAAAAAAATATGTGTATCCCATCATCAGGTCACAGCTTACTAGAAGTGCAGGCATCAGCCCAAACAGGGCAAATAAAGCAGGTGGGTGGCATTGGAATTATGGCATTGACAATGAGTCCAAATCTCCAATAAGCAATCTTCAACTTGCAGACTCCTGGTCGAATCAGGAATTGACAGTGAAAGAAAAATCCCGCACTCATGTCTTTTCCACATTCACTGTACCTTTCTCTGACTATGGAGTCCAATTGGGGCTTTGCCATTCGCCTAGTGGTAGTTCCACAGTTCCACTTCATGCTTTATCTATAATTCCAAGTCGTCGTGTGAACATTGCAAGTTCGAAATTGGCAGCCACCCATCGTTTGTCGGCTTTGAACTCGATCTTCCAACAGTGGGGAGCGCAGTCAGTGGCGCTGTGGAATATCAGTGGAGAGCCATGCAGTGGATCAGCCATCAATGGAACTGAATTTGAGAGTGGCCCAAATAACCCGGCCATTATATGTGATTGTACCTTTGACAATGGTACCACCTGCCATATAACCCAACTGAGAGTTTATGCTCTAGACAAAACAGGAGGGTTTCCAGAAGAGCTTCTGGCTTTGAAATATCTGACCTTTTTGAAAATAGATCAGAACTTTTTCACAGGTCCCTTACCCGCATGGATTGGCAATATGTCTGCATTGACGTTGTTGTCAATTGCCCACAATGCGTTCTCTGGGCCAATCCCCAAGGAACTTGGAAATCTGAAGGACCTGAATATGCTGTCCTTTGGATCAAATAATTTCACTGGAACACTCCCTCCAGAACTTGGTAATCTAATCAAGCTCCAGCAACTTTACATTAACAGCTGTGGACTTACTGGTGAAATTCCTTCAACATTTGCTAACCTTCGTAACATGCAAGTCCTTTGGGCATCAGACACTCCTTTCTCCGGAAAGATACCTGATTTCATTGGGAATTGGACGAAGCTAAACTCACTGAGACTTCAAGGGAACTCTTTTGAAGGCCCAATACCAACCAATTTTTCCCAGTTGACCTCATTGAATTCTCTGCGAATCAGTGATATATACAATGGGAGCTCCTCTCTTGGTTTCATAAAAAATTTGAAGAACTTGACTGATTTAGTTCTACGAAATGCATTGATTACTGGTAGCCTCCCTTCTGATATTGCAGAATATCCAAGTTTACAGATACTGGATTTGAGTTTCAACAATTTGACAGGCCAACTCCCAGATGCTTTGTTCAACATGAGTTCTCTTACATACTTGTAA

Protein Analysis

554

Amino Acids

60.65

Weight (kDa)

6.06

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 308 - 413 3.6e-08 Leucine-rich repeat region
LRR_14 PF23598 395 - 484 1.4e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 467, 932
AasI GACNNNNNNGTC 2 cut(s) 635, 1084
Acc36I ACCTGC 2 cut(s) 467, 932
Acc65I GGTACC 1 cut(s) 917
AccB1I GGYRCC 1 cut(s) 917
AccB7I CCANNNNNTGG 2 cut(s) 836, 1202
AccBSI CCGCTC 1 cut(s) 292
AccII CGCG 1 cut(s) 104
AccIII TCCGGA 1 cut(s) 1325
AciI CCGC 8 cut(s) 44, 79, 104, 164, 284, 292, 589, 1050
AclWI GGATC 4 cut(s) 340, 353, 847, 1174
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 4 cut(s) 860, 1260, 1438, 1495
AcuI CTGAAG 1 cut(s) 1160
AfaI GTAC 3 cut(s) 618, 904, 919
AfiI CCNNNNNNNGG 7 cut(s) 75, 423, 463, 787, 836, 1202, 1325
AhdI GACNNNNNGTC 2 cut(s) 511, 553
AjnI CCWGG 2 cut(s) 348, 551
AjuI GAANNNNNNNTTGG 2 cut(s) 1402, 1434
AloI GAACNNNNNNTCC 2 cut(s) 1177, 1209
AluBI AGCT 7 cut(s) 341, 433, 985, 1219, 1242, 1363, 1473
AluI AGCT 7 cut(s) 341, 433, 985, 1219, 1242, 1363, 1473
Alw21I GWGCWC 2 cut(s) 343, 1475
Alw26I GTCTC 1 cut(s) 1369
AlwI GGATC 4 cut(s) 340, 353, 847, 1174
AlwNI CAGNNNCTG 1 cut(s) 1588
Ama87I CYCGRG 1 cut(s) 109
Aor13HI TCCGGA 1 cut(s) 1325
AoxI GGCC 6 cut(s) 106, 871, 885, 1112, 1399, 1615
ApaI GGGCCC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 208, 743
ApoI RAATTY 4 cut(s) 860, 1260, 1438, 1495
Asp700I GAANNNNTTC 3 cut(s) 8, 984, 1031
Asp718I GGTACC 1 cut(s) 917
AspLEI GCGC 3 cut(s) 104, 796, 808
AspS9I GGNCC 8 cut(s) 106, 107, 383, 872, 1040, 1112, 1144, 1400
AsuC2I CCSGG 3 cut(s) 110, 111, 884
AsuHPI GGTGA 3 cut(s) 33, 202, 1268
AsuII TTCGAA 1 cut(s) 734
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 3 cut(s) 383, 1040, 1144
BaeGI GKGCMC 1 cut(s) 110
BaeI ACNNNNGTAYC 2 cut(s) 901, 934
BamHI GGATCC 1 cut(s) 345
BanI GGYRCC 1 cut(s) 917
BanII GRGCYC 4 cut(s) 110, 343, 356, 1475
BarI GAAGNNNNNNTAC 4 cut(s) 1389, 1421, 1537, 1569
Bbv12I GWGCWC 2 cut(s) 343, 1475
BbvI GCAGC 2 cut(s) 195, 755
BccI CCATC 5 cut(s) 181, 303, 425, 759, 854
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 350, 553
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 3 cut(s) 110, 111, 884
BcoDI GTCTC 1 cut(s) 1369
BfaI CTAG 3 cut(s) 438, 663, 956
BfoI RGCGCY 1 cut(s) 809
BfuAI ACCTGC 2 cut(s) 467, 932
BfuI GTATCC 1 cut(s) 423
BisI GCNGC 3 cut(s) 80, 209, 744
BlsI GCNGC 3 cut(s) 81, 210, 745
Bme1390I CCNGG 5 cut(s) 110, 111, 350, 553, 884
Bme18I GGWCC 3 cut(s) 383, 1040, 1144
BmeRI GACNNNNNGTC 2 cut(s) 511, 553
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 8 cut(s) 106, 107, 383, 872, 1040, 1112, 1144, 1400
BmiI GGNNCC 6 cut(s) 67, 108, 347, 355, 919, 1042
BmrFI CCNGG 5 cut(s) 110, 111, 350, 553, 884
BmrI ACTGGG 1 cut(s) 1417
BmsI GCATC 4 cut(s) 35, 459, 1316, 1618
BmuI ACTGGG 1 cut(s) 1417
BplI GAGNNNNNCTC 2 cut(s) 1462, 1494
BpmI CTGGAG 3 cut(s) 340, 1179, 1205
Bpu14I TTCGAA 1 cut(s) 734
BpuMI CCSGG 3 cut(s) 110, 111, 884
BsaJI CCNNGG 3 cut(s) 109, 349, 1122
BsaWI WCCGGW 1 cut(s) 1325
BsaXI ACNNNNNCTCC 6 cut(s) 131, 161, 370, 400, 1177, 1207
Bsc4I CCNNNNNNNGG 7 cut(s) 75, 423, 463, 787, 836, 1202, 1325
Bse118I RCCGGY 2 cut(s) 75, 319
Bse1I ACTGG 7 cut(s) 357, 385, 1186, 1258, 1423, 1546, 1593
Bse3DI GCAATG 2 cut(s) 314, 723
BseAI TCCGGA 1 cut(s) 1325
BseBI CCWGG 2 cut(s) 350, 553
BseDI CCNNGG 3 cut(s) 109, 349, 1122
BseGI GGATG 4 cut(s) 148, 192, 244, 314
BseLI CCNNNNNNNGG 7 cut(s) 75, 423, 463, 787, 836, 1202, 1325
BseMI GCAATG 2 cut(s) 314, 723
BseMII CTCAG 2 cut(s) 932, 1364
BseNI ACTGG 7 cut(s) 357, 385, 1186, 1258, 1423, 1546, 1593
BseRI GAGGAG 6 cut(s) 136, 143, 185, 242, 257, 1465
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 2 cut(s) 195, 755
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 6 cut(s) 108, 873, 887, 1114, 1401, 1617
BshNI GGYRCC 1 cut(s) 917
BsiHKAI GWGCWC 2 cut(s) 343, 1475
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 5 cut(s) 76, 110, 320, 884, 1326
BslFI GGGAC 1 cut(s) 1026
BslI CCNNNNNNNGG 7 cut(s) 75, 423, 463, 787, 836, 1202, 1325
BsmAI GTCTC 1 cut(s) 1369
BsmFI GGGAC 1 cut(s) 1026
BsnI GGCC 6 cut(s) 108, 873, 887, 1114, 1401, 1617
BsoBI CYCGRG 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 734
Bsp120I GGGCCC 1 cut(s) 106
Bsp1286I GDGCHC 4 cut(s) 110, 343, 356, 1475
Bsp13I TCCGGA 1 cut(s) 1325
Bsp143I GATC 5 cut(s) 345, 774, 839, 1021, 1166
BspACI CCGC 8 cut(s) 44, 79, 104, 164, 284, 292, 589, 1050
BspANI GGCC 6 cut(s) 108, 873, 887, 1114, 1401, 1617
BspCNI CTCAG 2 cut(s) 933, 1365
BspEI TCCGGA 1 cut(s) 1325
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 6 cut(s) 67, 108, 347, 355, 919, 1042
BspMI ACCTGC 2 cut(s) 467, 932
BspPI GGATC 4 cut(s) 340, 353, 847, 1174
BspQI GCTCTTC 1 cut(s) 975
BspT104I TTCGAA 1 cut(s) 734
BspT107I GGYRCC 1 cut(s) 917
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 2 cut(s) 314, 723
BsrFI RCCGGY 2 cut(s) 75, 319
BsrI ACTGG 7 cut(s) 357, 385, 1186, 1258, 1423, 1546, 1593
BssAI RCCGGY 2 cut(s) 75, 319
BssECI CCNNGG 3 cut(s) 109, 349, 1122
BssMI GATC 5 cut(s) 345, 774, 839, 1021, 1166
BssT1I CCWWGG 1 cut(s) 1122
Bst2UI CCWGG 2 cut(s) 350, 553
Bst4CI ACNGT 4 cut(s) 574, 616, 679, 786
Bst6I CTCTTC 1 cut(s) 975
BstBI TTCGAA 1 cut(s) 734
BstC8I GCNNGC 4 cut(s) 77, 106, 213, 448
BstDEI CTNAG 3 cut(s) 372, 941, 1373
BstF5I GGATG 4 cut(s) 148, 192, 244, 314
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 3 cut(s) 104, 796, 808
BstKTI GATC 5 cut(s) 348, 777, 842, 1024, 1169
BstMAI GTCTC 1 cut(s) 1369
BstMBI GATC 5 cut(s) 345, 774, 839, 1021, 1166
BstMWI GCNNNNNNNGC 2 cut(s) 473, 1100
BstNI CCWGG 2 cut(s) 350, 553
BstNSI RCATGY 1 cut(s) 1294
BstSCI CCNGG 5 cut(s) 108, 109, 348, 551, 882
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 195, 755
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 6 cut(s) 108, 873, 887, 1114, 1401, 1617
BtsCI GGATG 4 cut(s) 148, 192, 244, 314
BtsI GCAGTG 1 cut(s) 841
BveI ACCTGC 2 cut(s) 467, 932
Cac8I GCNNGC 4 cut(s) 77, 106, 213, 448
CaiI CAGNNNCTG 1 cut(s) 1588
CfoI GCGC 3 cut(s) 104, 796, 808
Cfr10I RCCGGY 2 cut(s) 75, 319
Cfr13I GGNCC 8 cut(s) 106, 107, 383, 872, 1040, 1112, 1144, 1400
Cfr9I CCCGGG 1 cut(s) 109
CseI GACGC 1 cut(s) 32
Csp6I GTAC 3 cut(s) 617, 903, 918
CviAII CATG 6 cut(s) 596, 689, 831, 1053, 1291, 1642
CviQI GTAC 3 cut(s) 617, 903, 918
DdeI CTNAG 3 cut(s) 372, 941, 1373
DpnI GATC 5 cut(s) 347, 776, 841, 1023, 1168
DpnII GATC 5 cut(s) 345, 774, 839, 1021, 1166
DrdI GACNNNNNNGTC 2 cut(s) 635, 1084
DriI GACNNNNNGTC 2 cut(s) 511, 553
DseDI GACNNNNNNGTC 2 cut(s) 635, 1084
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 1 cut(s) 975
Eam1105I GACNNNNNGTC 2 cut(s) 511, 553
EarI CTCTTC 1 cut(s) 975
Ecl136II GAGCTC 2 cut(s) 341, 1473
Eco130I CCWWGG 1 cut(s) 1122
Eco24I GRGCYC 4 cut(s) 110, 343, 356, 1475
Eco47I GGWCC 3 cut(s) 383, 1040, 1144
Eco53kI GAGCTC 2 cut(s) 341, 1473
Eco57I CTGAAG 1 cut(s) 1160
Eco88I CYCGRG 1 cut(s) 109
EcoICRI GAGCTC 2 cut(s) 341, 1473
EcoO109I RGGNCCY 2 cut(s) 1040, 1144
EcoRI GAATTC 1 cut(s) 1438
EcoRII CCWGG 2 cut(s) 348, 551
EcoT14I CCWWGG 1 cut(s) 1122
EcoT22I ATGCAT 1 cut(s) 1534
EcoT38I GRGCYC 4 cut(s) 110, 343, 356, 1475
ErhI CCWWGG 1 cut(s) 1122
FaeI CATG 6 cut(s) 599, 692, 834, 1056, 1294, 1645
FaqI GGGAC 1 cut(s) 1026
FatI CATG 6 cut(s) 595, 688, 830, 1052, 1290, 1641
FauI CCCGC 3 cut(s) 97, 596, 1057
Fnu4HI GCNGC 3 cut(s) 80, 209, 744
FokI GGATG 4 cut(s) 155, 199, 251, 321
FriOI GRGCYC 4 cut(s) 110, 343, 356, 1475
Fsp4HI GCNGC 3 cut(s) 80, 209, 744
FspBI CTAG 3 cut(s) 438, 663, 956
GlaI GCGC 3 cut(s) 103, 795, 807
GluI GCNGC 3 cut(s) 80, 209, 744
GsuI CTGGAG 3 cut(s) 340, 1179, 1205
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 6 cut(s) 108, 873, 887, 1114, 1401, 1617
HapII CCGG 5 cut(s) 76, 110, 320, 884, 1326
HgaI GACGC 1 cut(s) 32
HhaI GCGC 3 cut(s) 104, 796, 808
Hin1II CATG 6 cut(s) 599, 692, 834, 1056, 1294, 1645
Hin6I GCGC 3 cut(s) 102, 794, 806
HinP1I GCGC 3 cut(s) 102, 794, 806
HincII GTYRAC 1 cut(s) 1428
HindII GTYRAC 1 cut(s) 1428
HinfI GANTC 6 cut(s) 245, 512, 548, 559, 636, 1449
HpaII CCGG 5 cut(s) 76, 110, 320, 884, 1326
HphI GGTGA 3 cut(s) 33, 202, 1268
Hpy166II GTNNAC 4 cut(s) 721, 1247, 1428, 1580
Hpy188I TCNGA 7 cut(s) 345, 628, 1005, 1026, 1140, 1312, 1558
Hpy188III TCNNGA 5 cut(s) 563, 956, 977, 1196, 1326
Hpy8I GTNNAC 4 cut(s) 721, 1247, 1428, 1580
Hpy99I CGWCG 3 cut(s) 26, 52, 717
HpyAV CCTTC 5 cut(s) 1135, 1275, 1292, 1391, 1563
HpyCH4III ACNGT 4 cut(s) 574, 616, 679, 786
HpyCH4IV ACGT 1 cut(s) 1079
HpyCH4V TGCA 8 cut(s) 446, 545, 728, 834, 1073, 1294, 1532, 1565
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 1100
HpyF3I CTNAG 3 cut(s) 372, 941, 1373
HpySE526I ACGT 1 cut(s) 1079
Hsp92II CATG 6 cut(s) 599, 692, 834, 1056, 1294, 1645
HspAI GCGC 3 cut(s) 102, 794, 806
Kpn2I TCCGGA 1 cut(s) 1325
KpnI GGTACC 1 cut(s) 921
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 5 cut(s) 345, 774, 839, 1021, 1166
LguI GCTCTTC 1 cut(s) 975
LmnI GCTCC 5 cut(s) 359, 791, 1224, 1470, 1478
Lsp1109I GCAGC 2 cut(s) 195, 755
LweI GCATC 4 cut(s) 35, 459, 1316, 1618
MaeI CTAG 3 cut(s) 438, 663, 956
MaeII ACGT 1 cut(s) 1079
MaeIII GTNAC 2 cut(s) 426, 1286
MalI GATC 5 cut(s) 347, 776, 841, 1023, 1168
MbiI CCGCTC 1 cut(s) 292
MboI GATC 5 cut(s) 345, 774, 839, 1021, 1166
MboII GAAGA 5 cut(s) 21, 527, 769, 992, 1513
MfeI CAATTG 2 cut(s) 641, 1089
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 4 cut(s) 110, 343, 356, 1475
MlyI GAGTC 4 cut(s) 254, 521, 542, 645
MmeI TCCRAC 2 cut(s) 40, 805
Mph1103I ATGCAT 1 cut(s) 1534
MroI TCCGGA 1 cut(s) 1325
MroNI GCCGGC 1 cut(s) 75
MroXI GAANNNNTTC 3 cut(s) 8, 984, 1031
MseI TTAA 1 cut(s) 1236
MspA1I CMGCKG 1 cut(s) 1242
MspI CCGG 5 cut(s) 76, 110, 320, 884, 1326
MspR9I CCNGG 5 cut(s) 110, 111, 350, 553, 884
MunI CAATTG 2 cut(s) 641, 1089
MvaI CCWGG 2 cut(s) 350, 553
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 473, 1100
NaeI GCCGGC 1 cut(s) 77
NciI CCSGG 3 cut(s) 110, 111, 884
NdeII GATC 5 cut(s) 345, 774, 839, 1021, 1166
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 6 cut(s) 599, 692, 834, 1056, 1294, 1645
NlaIV GGNNCC 6 cut(s) 67, 108, 347, 355, 919, 1042
NmuCI GTSAC 1 cut(s) 426
NsiI ATGCAT 1 cut(s) 1534
NspI RCATGY 1 cut(s) 1294
NspV TTCGAA 1 cut(s) 734
PaqCI CACCTGC 2 cut(s) 467, 932
PciSI GCTCTTC 1 cut(s) 975
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 77
PdmI GAANNNNTTC 3 cut(s) 8, 984, 1031
PfeI GAWTC 2 cut(s) 559, 1449
PflMI CCANNNNNTGG 2 cut(s) 836, 1202
PkrI GCNGC 3 cut(s) 81, 210, 745
PleI GAGTC 4 cut(s) 253, 520, 542, 644
PpsI GAGTC 4 cut(s) 253, 520, 542, 644
PpuMI RGGWCCY 2 cut(s) 1040, 1144
Psp124BI GAGCTC 2 cut(s) 343, 1475
Psp5II RGGWCCY 2 cut(s) 1040, 1144
Psp6I CCWGG 2 cut(s) 348, 551
PspGI CCWGG 2 cut(s) 348, 551
PspN4I GGNNCC 6 cut(s) 67, 108, 347, 355, 919, 1042
PspOMI GGGCCC 1 cut(s) 106
PspPI GGNCC 8 cut(s) 106, 107, 383, 872, 1040, 1112, 1144, 1400
PspPPI RGGWCCY 2 cut(s) 1040, 1144
PstNI CAGNNNCTG 1 cut(s) 1588
PsuI RGATCY 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 1242
RsaI GTAC 3 cut(s) 618, 904, 919
RsaNI GTAC 3 cut(s) 617, 903, 918
SacI GAGCTC 2 cut(s) 343, 1475
SapI GCTCTTC 1 cut(s) 975
SaqAI TTAA 1 cut(s) 1236
SatI GCNGC 3 cut(s) 80, 209, 744
Sau3AI GATC 5 cut(s) 345, 774, 839, 1021, 1166
Sau96I GGNCC 8 cut(s) 106, 107, 383, 872, 1040, 1112, 1144, 1400
SchI GAGTC 4 cut(s) 254, 521, 542, 645
ScrFI CCNGG 5 cut(s) 110, 111, 350, 553, 884
SduI GDGCHC 4 cut(s) 110, 343, 356, 1475
SfaNI GCATC 4 cut(s) 35, 459, 1316, 1618
SfuI TTCGAA 1 cut(s) 734
SinI GGWCC 3 cut(s) 383, 1040, 1144
SmaI CCCGGG 1 cut(s) 111
SsiI CCGC 8 cut(s) 44, 79, 104, 164, 284, 292, 589, 1050
SspMI CTAG 3 cut(s) 438, 663, 956
SstI GAGCTC 2 cut(s) 343, 1475
StyD4I CCNGG 5 cut(s) 108, 109, 348, 551, 882
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 4 cut(s) 574, 616, 679, 786
TaiI ACGT 1 cut(s) 1082
TaqI TCGA 3 cut(s) 557, 734, 773
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 2 cut(s) 559, 1449
Tru1I TTAA 1 cut(s) 1236
Tru9I TTAA 1 cut(s) 1236
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 2 cut(s) 208, 743
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 4 cut(s) 17, 677, 1333, 1477
TspMI CCCGGG 1 cut(s) 109
Van91I CCANNNNNTGG 2 cut(s) 836, 1202
VpaK11BI GGWCC 3 cut(s) 383, 1040, 1144
XapI RAATTY 4 cut(s) 860, 1260, 1438, 1495
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 1294
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmaI CCCGGG 1 cut(s) 109
XmnI GAANNNNTTC 3 cut(s) 8, 984, 1031
XspI CTAG 3 cut(s) 438, 663, 956
Zsp2I ATGCAT 1 cut(s) 1534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.