Rroxscaffold_3G00218190
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
254387 .. 258112
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218190.1

Sequence Viewer

Length: 561 bp
ATGTTGGGTCAGTTACAAATAGTGCATGCAATTGTTAATAATGCAGTGGGTATCTTGCGCACCGAAATATGCTATGCGCCTATGCGTGGACACTTGACAGAGAAGACCGATGTGTTTGCCTATGGTGTTGTCATTCTAGAAATTGTCAGCGGTAGGCCAAATTCCGATCCAAGTTTGGAAGGCGATATGGTTTATCGTCTTAAATTGTCATCACCAATGCTACAACCACCCATGTCTCGCGTGATCGGAATGCTTGCAGGAGATATTGAAGTGACTCCTGCTATTTCAAAGCCTGGTTACTTGACAGACTGGAGATTTGATGATGCAACTACTATCACCAGCCAAACGAAATTTGGTGATGGGAGTACTGGCAACAGTCTAGGAACTGATATGTCAACTAGAGGAACTGACTTCAGGTTTTACAACTCGTCGGCAAGTACAAGCGTGATGGAGGATGCAGGGCAATTACACCTTCAAATGCCACTGTTCCCATACTCGATAATACGAATGGTGGTGGAAATGATGAAGAAGAATGGAAATACACTAAAAAGTCAACCTTAG

Protein Analysis

186

Amino Acids

20.4

Weight (kDa)

5.89

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 59
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 160, 350
AcuI CTGAAG 1 cut(s) 397
AfaI GTAC 2 cut(s) 367, 439
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 3 cut(s) 269, 288, 476
AjnI CCWGG 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 161
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 160, 350
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspLEI GCGC 2 cut(s) 60, 79
AsuHPI GGTGA 3 cut(s) 204, 328, 368
BbsI GAAGAC 1 cut(s) 110
BccI CCATC 2 cut(s) 353, 442
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 3 cut(s) 137, 380, 399
BmcAI AGTACT 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 313, 445
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 314, 373
BseBI CCWGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 314, 373
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 166, 243
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 157
BspFNI CGCG 1 cut(s) 240
BspPI GGATC 1 cut(s) 161
BsrI ACTGG 2 cut(s) 314, 373
BssMI GATC 2 cut(s) 166, 243
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 377, 486
BstC8I GCNNGC 2 cut(s) 27, 255
BstDEI CTNAG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 2 cut(s) 60, 79
BstKTI GATC 2 cut(s) 169, 246
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 166, 243
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 292
BstUI CGCG 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 482
Cac8I GCNNGC 2 cut(s) 27, 255
CfoI GCGC 2 cut(s) 60, 79
Csp6I GTAC 2 cut(s) 366, 438
CviAII CATG 2 cut(s) 26, 232
CviJI RGCY 3 cut(s) 157, 292, 342
CviKI_1 RGCY 3 cut(s) 157, 292, 342
CviQI GTAC 2 cut(s) 366, 438
DdeI CTNAG 1 cut(s) 558
DpnI GATC 2 cut(s) 168, 245
DpnII GATC 2 cut(s) 166, 243
Eco57I CTGAAG 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 292
FaeI CATG 2 cut(s) 29, 235
FaiI YATR 9 cut(s) 27, 70, 75, 83, 123, 188, 233, 392, 493
FalI AAGNNNNNCTT 1 cut(s) 541
FatI CATG 2 cut(s) 25, 231
FokI GGATG 1 cut(s) 467
FspBI CTAG 3 cut(s) 137, 380, 399
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 2 cut(s) 59, 78
GsuI CTGGAG 1 cut(s) 331
HaeIII GGCC 1 cut(s) 157
HhaI GCGC 2 cut(s) 60, 79
Hin1II CATG 2 cut(s) 29, 235
Hin6I GCGC 2 cut(s) 58, 77
HinP1I GCGC 2 cut(s) 58, 77
HincII GTYRAC 2 cut(s) 396, 554
HindII GTYRAC 2 cut(s) 396, 554
HinfI GANTC 1 cut(s) 274
HphI GGTGA 3 cut(s) 204, 328, 368
Hpy166II GTNNAC 3 cut(s) 89, 396, 554
Hpy188I TCNGA 2 cut(s) 166, 248
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 3 cut(s) 89, 396, 554
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 173, 482
HpyCH4III ACNGT 2 cut(s) 377, 486
HpyCH4V TGCA 6 cut(s) 25, 29, 44, 257, 326, 458
HpyF3I CTNAG 1 cut(s) 558
Hsp92II CATG 2 cut(s) 29, 235
HspAI GCGC 2 cut(s) 58, 77
Kzo9I GATC 2 cut(s) 166, 243
LpnPI CCDG 9 cut(s) 243, 279, 291, 295, 306, 352, 354, 400, 444
LweI GCATC 2 cut(s) 313, 445
MaeI CTAG 3 cut(s) 137, 380, 399
MaeIII GTNAC 3 cut(s) 12, 271, 296
MalI GATC 2 cut(s) 168, 245
MboI GATC 2 cut(s) 166, 243
MboII GAAGA 3 cut(s) 115, 538, 541
MfeI CAATTG 1 cut(s) 30
MluCI AATT 6 cut(s) 30, 141, 160, 203, 350, 464
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 2 cut(s) 395, 445
MseI TTAA 2 cut(s) 36, 201
MspA1I CMGCKG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 240
NdeII GATC 2 cut(s) 166, 243
NlaIII CATG 2 cut(s) 29, 235
NmuCI GTSAC 1 cut(s) 271
NsbI TGCGCA 1 cut(s) 59
NspI RCATGY 1 cut(s) 29
PaeI GCATGC 1 cut(s) 29
PctI GAATGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
RsaI GTAC 2 cut(s) 367, 439
RsaNI GTAC 2 cut(s) 366, 438
SaqAI TTAA 2 cut(s) 36, 201
Sau3AI GATC 2 cut(s) 166, 243
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 294
SetI ASST 3 cut(s) 419, 474, 559
SfaNI GCATC 2 cut(s) 313, 445
SphI GCATGC 1 cut(s) 29
Sse9I AATT 6 cut(s) 30, 141, 160, 203, 350, 464
SsiI CCGC 1 cut(s) 150
SspMI CTAG 3 cut(s) 137, 380, 399
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 377, 486
TaqI TCGA 1 cut(s) 497
TaqII GACCGA 1 cut(s) 122
TasI AATT 6 cut(s) 30, 141, 160, 203, 350, 464
TatI WGTACW 2 cut(s) 365, 437
Tru1I TTAA 2 cut(s) 36, 201
Tru9I TTAA 2 cut(s) 36, 201
TscAI CASTG 2 cut(s) 51, 489
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 539
TspRI CASTG 2 cut(s) 51, 489
XapI RAATTY 2 cut(s) 160, 350
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 3 cut(s) 137, 380, 399
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.