Rh6DG496500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
65418584 .. 65421137
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG496500.1

Sequence Viewer

Length: 336 bp
ATGTTCTCATTTGTATTAGTTCGTTGCCAATACATTACTAAACTCAAAGCAGGCTTTAAGTATCTACCTTTTGTAAAGACACGAATAAAAATTTTACTTGAAGTGGCACATGACTGGAAACTTTCCACTCCATGCAAGCCAATACCACAGAAGATCTTGGAGTTTCATTGGTTCTGCAGCACTTACAAATGGCTCATCTGCAAGTGGGGTATTGAGGCCAATACGAAGCAATCGAATATAACTGGAGAACCATGTAGTGGAGCTGCCAGTGACTCTGCCGCATTTGACAATGGCGATTACAACCCTTTCATCAAATGTGACTCTTCTGTCGTTTAG

Protein Analysis

111

Amino Acids

12.67

Weight (kDa)

8.93

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 177, 263
ApoI RAATTY 1 cut(s) 90
BbvI GCAGC 2 cut(s) 189, 250
BfmI CTRYAG 1 cut(s) 175
BglII AGATCT 1 cut(s) 153
BisI GCNGC 3 cut(s) 178, 264, 279
BlsI GCNGC 3 cut(s) 179, 265, 280
BpmI CTGGAG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 119, 247, 267
BseLI CCNNNNNNNGG 1 cut(s) 257
BseNI ACTGG 3 cut(s) 119, 247, 267
BseXI GCAGC 2 cut(s) 189, 250
BshFI GGCC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 179
BsrI ACTGG 3 cut(s) 119, 247, 267
BssMI GATC 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 52, 137
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 189, 250
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 52, 137
CviAII CATG 3 cut(s) 110, 132, 252
CviJI RGCY 5 cut(s) 54, 139, 193, 218, 263
CviKI_1 RGCY 5 cut(s) 54, 139, 193, 218, 263
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
FaeI CATG 3 cut(s) 113, 135, 255
FaiI YATR 4 cut(s) 111, 133, 239, 253
FatI CATG 3 cut(s) 109, 131, 251
Fnu4HI GCNGC 3 cut(s) 178, 264, 279
Fsp4HI GCNGC 3 cut(s) 178, 264, 279
GluI GCNGC 3 cut(s) 178, 264, 279
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 3 cut(s) 113, 135, 255
HinfI GANTC 2 cut(s) 272, 320
HpyCH4V TGCA 3 cut(s) 135, 177, 201
Hsp92II CATG 3 cut(s) 113, 135, 255
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 4 cut(s) 36, 100, 228, 280
Lsp1109I GCAGC 2 cut(s) 189, 250
MaeIII GTNAC 2 cut(s) 269, 317
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 2 cut(s) 163, 315
MflI RGATCY 1 cut(s) 153
MluCI AATT 1 cut(s) 90
MlyI GAGTC 2 cut(s) 266, 314
MnlI CCTC 1 cut(s) 208
MseI TTAA 1 cut(s) 57
NdeII GATC 1 cut(s) 153
NlaIII CATG 3 cut(s) 113, 135, 255
NmuCI GTSAC 2 cut(s) 269, 317
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 3 cut(s) 179, 265, 280
PleI GAGTC 2 cut(s) 266, 314
PpsI GAGTC 2 cut(s) 266, 314
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 153
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 3 cut(s) 178, 264, 279
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 2 cut(s) 266, 314
SetI ASST 2 cut(s) 70, 265
SfcI CTRYAG 1 cut(s) 175
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 279
TaqI TCGA 1 cut(s) 233
TasI AATT 1 cut(s) 90
TauI GCSGC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 269, 317
TseI GCWGC 2 cut(s) 177, 263
Tsp45I GTSAC 2 cut(s) 269, 317
TspDTI ATGAA 2 cut(s) 155, 298
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.