RLG00000032404

Di-glucose binding within endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
14503302 .. 14505548
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032404

Sequence Viewer

Length: 825 bp
ATGGCTCAAAATGCTACAAATGCTACTACGGACCCATCTGAAGTGTCGGCTTTGAACTCGATCTTCCAACAGTGGGGAGCACAGTCGGTGGCGCTGTGGAATATCAGTGGAGAGCCATGCAGTGGATCAGCCCTCAATGAAGCTATATTTGAGAGCACTCCTAATAACCCTGCCATTATATGTGATTGTACCTATGACGATGGTACCACCTGCCATATAACCAGACTGAGAGTTTATGCTCTAGACAAAACAGGAAGGTTTCCAGAAGAGCTTCTGGCTTTGAAATATCTGAACTTTTTGAAAATAGATCAGAACTTTTTCACAGGCCCCTTACCCGCATGGATTGGCAATATGTCTGCATTGACGTTGTTGTCAATTGCCCACAATGCATTCTCTGGGCCTATCCCCAAGGAACTTGGAAATCTGAAGGACCTAAATATGCTTTACATAAACAGCTGTGGACTTACTGGTGAAATTCCTTCAACATTTGCTAACCTTCGTAACATGGAAATCCTTTGGGCATCAGACACTCCTTTCTCTGGAAAGATACCTGATTTCATTGGGAATTGGACGAAGCTAAACTCACTGAGACTTCAAGGAAACTCTTTGGAAGGCCCAATACCAACCAATTTTTCTCAGTTTACCTCATTGAATTCCCTGCGAATCAGTGATATATACAATGGGAGCTCCTCTCTTGGTTTCATAAAAAATTTGAAGAACTTGACTGATTTAGTTCTACGAAATGCATTGATTACTGGTAGCCTACCTTCTGATATTGCAGAATATCCAAGCAGTTTACAGATACTGTACGTTCTTACGACATAG

Protein Analysis

275

Amino Acids

29.91

Weight (kDa)

4.81

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 74 - 150 1e-05 Leucine-rich repeat region
LRR_14 PF23598 135 - 244 1.2e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
AasI GACNNNNNNGTC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 218
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 122
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 3 cut(s) 474, 652, 709
AcuI CTGAAG 2 cut(s) 60, 446
AfaI GTAC 3 cut(s) 190, 205, 809
AfiI CCNNNNNNNGG 3 cut(s) 73, 122, 539
AgsI TTSAA 7 cut(s) 55, 283, 301, 483, 596, 652, 715
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AluBI AGCT 5 cut(s) 143, 271, 456, 577, 687
AluI AGCT 5 cut(s) 143, 271, 456, 577, 687
Alw21I GWGCWC 3 cut(s) 82, 158, 689
Alw26I GTCTC 1 cut(s) 583
AlwI GGATC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 805
AoxI GGCC 3 cut(s) 325, 398, 613
ApoI RAATTY 3 cut(s) 474, 652, 709
Asp700I GAANNNNTTC 2 cut(s) 270, 317
Asp718I GGTACC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 5 cut(s) 31, 326, 398, 430, 614
AsuHPI GGTGA 1 cut(s) 482
AvaII GGWCC 2 cut(s) 31, 430
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 689
BarI GAAGNNNNNNTAC 4 cut(s) 603, 635, 751, 783
Bbv12I GWGCWC 3 cut(s) 82, 158, 689
BccI CCATC 2 cut(s) 43, 194
BcoDI GTCTC 1 cut(s) 583
BfaI CTAG 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 218
Bme18I GGWCC 2 cut(s) 31, 430
BmgT120I GGNCC 5 cut(s) 31, 326, 398, 430, 614
BmiI GGNNCC 3 cut(s) 33, 205, 328
BmsI GCATC 1 cut(s) 530
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BsaJI CCNNGG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 122, 539
Bse1I ACTGG 2 cut(s) 472, 760
BseDI CCNNGG 1 cut(s) 408
BseLI CCNNNNNNNGG 3 cut(s) 73, 122, 539
BseMII CTCAG 3 cut(s) 218, 578, 650
BseNI ACTGG 2 cut(s) 472, 760
BseRI GAGGAG 1 cut(s) 679
BshFI GGCC 3 cut(s) 327, 400, 615
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 3 cut(s) 82, 158, 689
BslI CCNNNNNNNGG 3 cut(s) 73, 122, 539
BsmAI GTCTC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 3 cut(s) 327, 400, 615
Bsp1286I GDGCHC 3 cut(s) 82, 158, 689
Bsp143I GATC 3 cut(s) 60, 125, 307
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 327, 400, 615
BspCNI CTCAG 3 cut(s) 219, 579, 649
BspLI GGNNCC 3 cut(s) 33, 205, 328
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 472, 760
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 3 cut(s) 60, 125, 307
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 72, 84, 807
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 227, 587, 636
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 3 cut(s) 63, 128, 310
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 3 cut(s) 60, 125, 307
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 386
BsuRI GGCC 3 cut(s) 327, 400, 615
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 5 cut(s) 77, 112, 127, 584, 673
BveI ACCTGC 1 cut(s) 218
CaiI CAGNNNCTG 1 cut(s) 805
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 5 cut(s) 31, 326, 398, 430, 614
Csp6I GTAC 3 cut(s) 189, 204, 808
CviAII CATG 3 cut(s) 117, 339, 505
CviQI GTAC 3 cut(s) 189, 204, 808
DdeI CTNAG 3 cut(s) 227, 587, 636
DpnI GATC 3 cut(s) 62, 127, 309
DpnII GATC 3 cut(s) 60, 125, 307
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 689
Eco47I GGWCC 2 cut(s) 31, 430
Eco53kI GAGCTC 1 cut(s) 687
Eco57I CTGAAG 2 cut(s) 60, 446
EcoICRI GAGCTC 1 cut(s) 687
EcoO109I RGGNCCY 2 cut(s) 326, 430
EcoRI GAATTC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 2 cut(s) 391, 748
EcoT38I GRGCYC 1 cut(s) 689
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 3 cut(s) 120, 342, 508
FatI CATG 3 cut(s) 116, 338, 504
FauI CCCGC 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 689
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 3 cut(s) 327, 400, 615
HhaI GCGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 120, 342, 508
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 1 cut(s) 663
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 3 cut(s) 461, 642, 797
Hpy188I TCNGA 6 cut(s) 40, 291, 312, 426, 526, 772
Hpy188III TCNNGA 3 cut(s) 242, 263, 540
Hpy8I GTNNAC 3 cut(s) 461, 642, 797
HpyAV CCTTC 6 cut(s) 249, 421, 489, 506, 605, 777
HpyCH4III ACNGT 3 cut(s) 72, 84, 807
HpyCH4IV ACGT 2 cut(s) 365, 810
HpyCH4V TGCA 5 cut(s) 120, 359, 389, 746, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 386
HpyF3I CTNAG 3 cut(s) 227, 587, 636
HpySE526I ACGT 2 cut(s) 365, 810
Hsp92II CATG 3 cut(s) 120, 342, 508
HspAI GCGC 1 cut(s) 92
KpnI GGTACC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 60, 125, 307
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 3 cut(s) 77, 684, 692
LweI GCATC 1 cut(s) 530
MaeI CTAG 1 cut(s) 242
MaeII ACGT 2 cut(s) 365, 810
MaeIII GTNAC 1 cut(s) 500
MalI GATC 3 cut(s) 62, 127, 309
MboI GATC 3 cut(s) 60, 125, 307
MboII GAAGA 3 cut(s) 55, 278, 727
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 3 cut(s) 82, 158, 689
MluCI AATT 6 cut(s) 375, 474, 565, 628, 652, 709
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 3 cut(s) 143, 655, 700
Mph1103I ATGCAT 2 cut(s) 391, 748
MroXI GAANNNNTTC 2 cut(s) 270, 317
MspA1I CMGCKG 1 cut(s) 456
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 386
NdeII GATC 3 cut(s) 60, 125, 307
NlaIII CATG 3 cut(s) 120, 342, 508
NlaIV GGNNCC 3 cut(s) 33, 205, 328
NsiI ATGCAT 2 cut(s) 391, 748
PaqCI CACCTGC 1 cut(s) 218
PciSI GCTCTTC 1 cut(s) 261
PctI GAATGC 1 cut(s) 389
PdmI GAANNNNTTC 2 cut(s) 270, 317
PfeI GAWTC 1 cut(s) 663
PflMI CCANNNNNTGG 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 430
PspN4I GGNNCC 3 cut(s) 33, 205, 328
PspPI GGNCC 5 cut(s) 31, 326, 398, 430, 614
PspPPI RGGWCCY 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 805
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 3 cut(s) 190, 205, 809
RsaNI GTAC 3 cut(s) 189, 204, 808
SacI GAGCTC 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 261
Sau3AI GATC 3 cut(s) 60, 125, 307
Sau96I GGNCC 5 cut(s) 31, 326, 398, 430, 614
SduI GDGCHC 3 cut(s) 82, 158, 689
SfaNI GCATC 1 cut(s) 530
SinI GGWCC 2 cut(s) 31, 430
Sse9I AATT 6 cut(s) 375, 474, 565, 628, 652, 709
SsiI CCGC 1 cut(s) 336
SspMI CTAG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 689
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 3 cut(s) 72, 84, 807
TaiI ACGT 2 cut(s) 368, 813
TaqI TCGA 1 cut(s) 59
TasI AATT 6 cut(s) 375, 474, 565, 628, 652, 709
TfiI GAWTC 1 cut(s) 663
TscAI CASTG 5 cut(s) 77, 112, 127, 591, 673
TspDTI ATGAA 3 cut(s) 153, 547, 691
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 5 cut(s) 77, 112, 127, 591, 673
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 31, 430
XapI RAATTY 3 cut(s) 474, 652, 709
XbaI TCTAGA 1 cut(s) 241
XmnI GAANNNNTTC 2 cut(s) 270, 317
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 2 cut(s) 391, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.