Rh4DG033400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000088
Physical Location & Seq
Forward (+)
5702922 .. 5711477
8556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG033400.1

Sequence Viewer

Length: 369 bp
ATGCCGAATTCTCCATGCAACAAACCCAAACAAATTCAATTCCTCACCGGTACTCAAGCCCCCAATGGCCTCCCCCTACCTATATGGTCTTTGATTAGCTGTTTGTCCTATATAAGACTTAAACACGGTAATTATACCAAATCATCACCATCAATTAGCTCTGCAAAAACGAAAAGTGGCTTTAGAGACAAAGATTTCATTGGCGGAAATATCAATCTCAGTCTCTGCAAAGAAGAAGACAATGAGTGGGAAGAAGACACAGCACGTGTTCCACTGCGGCTGAATCCAAGCACAGATAATGCAGAGGAACACTGGCTTCTGCAAAAGCTTGGTGAAAGACCACATTACTACCATGACAAGGGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

7.75

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 204, 277
AcsI RAATTY 2 cut(s) 7, 33
AcvI CACGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 3 cut(s) 99, 159, 328
AluI AGCT 3 cut(s) 99, 159, 328
Alw26I GTCTC 2 cut(s) 180, 227
AlwNI CAGNNNCTG 1 cut(s) 225
AoxI GGCC 2 cut(s) 67, 361
ApoI RAATTY 2 cut(s) 7, 33
AsiGI ACCGGT 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 37, 138, 344
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 243, 261
BccI CCATC 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 180, 227
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 243, 261
BpuEI CTTGAG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 317
BshFI GGCC 2 cut(s) 69, 363
BshTI ACCGGT 1 cut(s) 47
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 180, 227
BsnI GGCC 2 cut(s) 69, 363
BspACI CCGC 2 cut(s) 204, 277
BspANI GGCC 2 cut(s) 69, 363
BspCNI CTCAG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 317
BssAI RCCGGY 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 218
BstMAI GTCTC 2 cut(s) 180, 227
BstV2I GAAGAC 2 cut(s) 243, 261
BsuRI GGCC 2 cut(s) 69, 363
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 3 cut(s) 272, 310, 364
CaiI CAGNNNCTG 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 47
CviAII CATG 2 cut(s) 15, 353
CviJI RGCY 9 cut(s) 59, 69, 99, 159, 180, 280, 316, 328, 363
CviKI_1 RGCY 9 cut(s) 59, 69, 99, 159, 180, 280, 316, 328, 363
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 218
EciI GGCGGA 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 7
FaeI CATG 2 cut(s) 18, 356
FaiI YATR 7 cut(s) 16, 83, 85, 111, 113, 135, 354
FatI CATG 2 cut(s) 14, 352
Fnu4HI GCNGC 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 278
HaeIII GGCC 2 cut(s) 69, 363
HapII CCGG 1 cut(s) 48
Hin1II CATG 2 cut(s) 18, 356
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 1 cut(s) 283
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 37, 138, 344
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 18, 164, 228, 302, 322
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 18, 356
LpnPI CCDG 2 cut(s) 61, 298
MaeII ACGT 1 cut(s) 265
MboII GAAGA 4 cut(s) 245, 248, 263, 266
MluCI AATT 5 cut(s) 7, 33, 38, 130, 153
MnlI CCTC 3 cut(s) 53, 80, 298
MseI TTAA 1 cut(s) 120
MspI CCGG 1 cut(s) 48
NlaIII CATG 2 cut(s) 18, 356
PfeI GAWTC 1 cut(s) 283
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 1 cut(s) 279
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 266
PspCI CACGTG 1 cut(s) 266
PspPI GGNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 225
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 361
SetI ASST 5 cut(s) 82, 101, 161, 268, 330
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 5 cut(s) 7, 33, 38, 130, 153
SsiI CCGC 2 cut(s) 204, 277
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 268
TasI AATT 5 cut(s) 7, 33, 38, 130, 153
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 279, 317
TspDTI ATGAA 1 cut(s) 187
TspRI CASTG 2 cut(s) 279, 317
XapI RAATTY 2 cut(s) 7, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.