RchiOBHm_Chr5g0018901

Di-glucose binding within endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000088
Physical Location & Seq
Forward (+)
13384663 .. 13391441
6779 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29906

Sequence Viewer

Length: 1989 bp
ATGGCTATACGTTTTCCCAGTTGGCAACTACCTATGAATTTGAGAATGAAGCAGCAAACATCTCTTTCAGTCTTCTTGTTCTGCCTCTGCTTCCTGGGTTCCACTTGGTTTCAAGTTTCCACGGCTGAAAATGCCACTACTGACCCATCTGAAGTTCGAGCGTTGAACTCAATATTCTCACAATGGGATACTCAAGCGGTGGCGCTGTGGAATATCAGTGGAGAGCCATGCAGTGGATCAGCCATCAATGGAACCGAATTTGAGAGCCCTCCTAATAACCCAGCCATCATTTGCGACTGTACTTATGACAGTGGCACCACCTGCCATATTACCCAACTGAGAGTCTATGCTCTAAACAAACGAGGAGTGTTTGCAAAGGAACTTTTGGCTTTGAGATACCTGACCTTCTTGAAAATCGATCAGAATTATTTCACAGGTCCTCTACCAGCATGGATCGGCAATATGACTGCATTGACATTATTGTCAATTGCTCACAATGCATTCTCTGGGCCCATCCCCAAGGAGCTTGGAAACCTCAAGGACTTAAATATGCTGTCCTTTGGAATAAATAACTTCTCCGGAACACTCCCTCCCGAACTTGGTAATTTGGTCAAGCTTCAACAACTTTACATAAACAGCTGCGGACTCGGTGGTGAAATTCCTTCAACATTTGCTAACCTCCGCAATATGCAAGTCCTATGGGCATCAGACAGTTCCTTCTCAGGAAGGATACCTGATTTCATTGGGAATTGGACAAAGATAAACTCTCTGCGATTTCAAGGGAACTCTTTTAGAGGTCCAATACCGACCAGTTTTTCTCAACTAACTGCCTTGAATTCTTTGCGAATCAGTGATATCTACAATGTAAGCTCCTCTCTTGATTTCATAAAGAATTTGAAGAACTTGACTGATTTAGCGCTACGAAATGCATTAATTACTGGTAGCATCCCTTCTGATATTGGAGAATACCAAAATTTACAGATACTGGATTTGAGTTTCAACAATTTAACAGGTCAACTTCCAGGTGGCTTGTTCAACATGAGTTCTCTAACATACTTATTTCTTGGAAACAATAGCTTGCAGGGAGCTCTTCCTAGCCAAAAGAGTGATATTCTTCACACTATAGATTTGTCTTACAACTATTTATCAGGAAGTCTTCCCCCATGGGTAACCTCAATATCACAGCTGAACTTAGTGGTGAACAACTTCACATTGGACAGTTCAAACATAAATCTTCCTGGATTAAATTGCCTTCAAAGAAATTTTCCATGCAATAGAAATACCCCAAAATATGCAAAATTCTCAATCAACTGTGGTGGACTAGAACTGAGAGGGAGTGATGACATATTGTATGAGACTGAAGACTCAGCTATTGGCCCAGCAACGTTTAATGTAACAAGTTCAGAGAAATGGGCTGTTAGCAATGTGGGTTTGTTTGCTGACAGAAAGAATCCGAGCTTTGTTGTAAATACCCTGGCACAAGTCACTGGGACAGATGTGACCCCAGAGCTTTTCCAGACCTCAAGGTTGTCTCCAGGATCACTGAGATACTATGGCCTGGGTCTCGAGAATGGGCCTTATACTGTAAAATTGCAATTTGCAGAAACAGTTTACGATGATCGTGCCTTGCAAACTTGGAAAAGTCTAGGACGGCGTATGTTTGATATCTATATTCAGGGGAACCTTGTATTGAAGGACTTTGACATATCAAAGGAGGCAGGAGGGGTTTTAAGAGCTGTTGTGAAAACCTTCAGTGTTAATGTTTCAGAGAATTATCTTGAAATTCATTTATTCTGGGCTGGTAAGGGGACCTGCTGCACACCTGATCAAGGTCATTACGGCCCACTAATAGCTGCTGTGCATGCTGCTTCAGATTTTACACCTACTGTTTCTGGTGTTCCACCAACTACTGTAGGAATGAAGAGCAGGACAGGGCTGATGGGTATTCTGGTTCCTGTTGGAGTTTTGGTGTTGCTAGTTATAATTTGA

Protein Analysis

662

Amino Acids

72.49

Weight (kDa)

6.13

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 194 - 283 1.1e-07 Leucine-rich repeat region
LRR_14 PF23598 272 - 358 6.1e-07 Leucine-rich repeat region
Malectin PF11721 434 - 620 3.9e-37 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1982
AarI CACCTGC 1 cut(s) 329
AasI GACNNNNNNGTC 1 cut(s) 481
Acc36I ACCTGC 2 cut(s) 329, 1820
AccB1I GGYRCC 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 233
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 3 cut(s) 197, 642, 682
AclI AACGTT 1 cut(s) 1385
AclWI GGATC 3 cut(s) 244, 461, 1546
AcsI RAATTY 9 cut(s) 37, 257, 657, 835, 892, 973, 1261, 1298, 1782
AcuI CTGAAG 4 cut(s) 171, 1380, 1735, 1854
AfaI GTAC 1 cut(s) 301
AfeI AGCGCT 1 cut(s) 918
AfiI CCNNNNNNNGG 3 cut(s) 233, 599, 1829
AjnI CCWGG 6 cut(s) 93, 1021, 1237, 1473, 1534, 1557
AloI GAACNNNNNNTCC 2 cut(s) 574, 606
Alw21I GWGCWC 1 cut(s) 1090
Alw26I GTCTC 3 cut(s) 1349, 1536, 1568
AlwI GGATC 3 cut(s) 244, 461, 1546
AlwNI CAGNNNCTG 1 cut(s) 985
Ama87I CYCGRG 1 cut(s) 1565
Aor13HI TCCGGA 1 cut(s) 578
Aor51HI AGCGCT 1 cut(s) 918
AoxI GGCC 5 cut(s) 509, 1375, 1555, 1574, 1840
ApaI GGGCCC 1 cut(s) 513
ApeKI GCWGC 5 cut(s) 52, 639, 1815, 1853, 1865
ApoI RAATTY 9 cut(s) 37, 257, 657, 835, 892, 973, 1261, 1298, 1782
AseI ATTAAT 1 cut(s) 932
Asp700I GAANNNNTTC 3 cut(s) 428, 1205, 1748
AspLEI GCGC 2 cut(s) 205, 919
AspS9I GGNCC 8 cut(s) 437, 509, 510, 797, 1376, 1574, 1809, 1841
AsuHPI GGTGA 2 cut(s) 665, 1210
AvaI CYCGRG 1 cut(s) 1565
AvaII GGWCC 3 cut(s) 437, 797, 1809
BaeGI GKGCMC 1 cut(s) 513
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 3 cut(s) 269, 513, 1090
BarI GAAGNNNNNNTAC 2 cut(s) 934, 966
BbsI GAAGAC 3 cut(s) 64, 1148, 1368
Bbv12I GWGCWC 1 cut(s) 1090
BbvI GCAGC 5 cut(s) 64, 626, 1802, 1840, 1852
BccI CCATC 5 cut(s) 154, 251, 293, 521, 1933
BceAI ACGGC 3 cut(s) 138, 1667, 1855
BcgI CGANNNNNNTGC 2 cut(s) 1604, 1638
BciT130I CCWGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
BciVI GTATCC 2 cut(s) 181, 723
BclI TGATCA 1 cut(s) 1825
BcoDI GTCTC 3 cut(s) 1349, 1536, 1568
BfaI CTAG 4 cut(s) 1095, 1322, 1646, 1976
BfmI CTRYAG 2 cut(s) 1122, 1911
BfoI RGCGCY 2 cut(s) 206, 920
BfuAI ACCTGC 2 cut(s) 329, 1820
BfuI GTATCC 2 cut(s) 181, 723
BisI GCNGC 5 cut(s) 53, 640, 1816, 1854, 1866
BlsI GCNGC 5 cut(s) 54, 641, 1817, 1855, 1867
Bme1390I CCNGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
Bme18I GGWCC 3 cut(s) 437, 797, 1809
BmeT110I CYCGRG 1 cut(s) 1565
BmgT120I GGNCC 8 cut(s) 437, 509, 510, 797, 1376, 1574, 1809, 1841
BmiI GGNNCC 7 cut(s) 100, 253, 316, 511, 1682, 1810, 1953
BmrFI CCNGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
BmrI ACTGGG 2 cut(s) 12, 1497
BmsI GCATC 2 cut(s) 713, 954
BmuI ACTGGG 2 cut(s) 12, 1497
BpiI GAAGAC 3 cut(s) 64, 1148, 1368
BpmI CTGGAG 1 cut(s) 1518
BpuEI CTTGAG 3 cut(s) 177, 521, 1507
Bsa29I ATCGAT 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 1568
BsaJI CCNNGG 6 cut(s) 94, 120, 519, 1163, 1473, 1558
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 4 cut(s) 574, 604, 1953, 1983
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 599, 1829
Bse1I ACTGG 5 cut(s) 18, 810, 943, 990, 1492
Bse3DI GCAATG 1 cut(s) 1429
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 6 cut(s) 94, 120, 519, 1163, 1473, 1558
BseGI GGATG 2 cut(s) 513, 945
BseLI CCNNNNNNNGG 3 cut(s) 233, 599, 1829
BseMI GCAATG 1 cut(s) 1429
BseMII CTCAG 5 cut(s) 329, 735, 1319, 1380, 1535
BseNI ACTGG 5 cut(s) 18, 810, 943, 990, 1492
BseRI GAGGAG 2 cut(s) 378, 862
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 5 cut(s) 64, 626, 1802, 1840, 1852
BseYI CCCAGC 2 cut(s) 280, 1378
BsgI GTGCAG 1 cut(s) 1801
BshFI GGCC 5 cut(s) 511, 1377, 1557, 1576, 1842
BshNI GGYRCC 1 cut(s) 314
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 1090
BsiHKCI CYCGRG 1 cut(s) 1565
BsiSI CCGG 1 cut(s) 579
BslFI GGGAC 2 cut(s) 1504, 1822
BslI CCNNNNNNNGG 3 cut(s) 233, 599, 1829
BsmAI GTCTC 3 cut(s) 1349, 1536, 1568
BsmFI GGGAC 2 cut(s) 1504, 1822
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 5 cut(s) 511, 1377, 1557, 1576, 1842
Bso31I GGTCTC 1 cut(s) 1568
BsoBI CYCGRG 1 cut(s) 1565
Bsp120I GGGCCC 1 cut(s) 509
Bsp1286I GDGCHC 3 cut(s) 269, 513, 1090
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
Bsp19I CCATGG 1 cut(s) 1163
BspACI CCGC 3 cut(s) 197, 642, 682
BspANI GGCC 5 cut(s) 511, 1377, 1557, 1576, 1842
BspCNI CTCAG 5 cut(s) 330, 734, 1320, 1379, 1536
BspDI ATCGAT 1 cut(s) 417
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 7 cut(s) 100, 253, 316, 511, 1682, 1810, 1953
BspMI ACCTGC 2 cut(s) 329, 1820
BspPI GGATC 3 cut(s) 244, 461, 1546
BspQI GCTCTTC 2 cut(s) 1095, 1916
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 1568
BsrDI GCAATG 1 cut(s) 1429
BsrI ACTGG 5 cut(s) 18, 810, 943, 990, 1492
BssECI CCNNGG 6 cut(s) 94, 120, 519, 1163, 1473, 1558
BssMI GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
BssT1I CCWWGG 2 cut(s) 519, 1163
Bst2UI CCWGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
Bst4CI ACNGT 9 cut(s) 299, 311, 713, 1220, 1313, 1585, 1609, 1888, 1912
Bst6I CTCTTC 2 cut(s) 1095, 1916
BstAPI GCANNNNNTGC 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 1079, 1863
BstDEI CTNAG 6 cut(s) 338, 721, 1192, 1328, 1366, 1544
BstDSI CCRYGG 2 cut(s) 120, 1163
BstEII GGTNACC 1 cut(s) 1168
BstENI CCTNNNNNAGG 1 cut(s) 1827
BstF5I GGATG 2 cut(s) 513, 945
BstH2I RGCGCY 2 cut(s) 206, 920
BstHHI GCGC 2 cut(s) 205, 919
BstKTI GATC 6 cut(s) 239, 421, 456, 1541, 1621, 1828
BstMAI GTCTC 3 cut(s) 1349, 1536, 1568
BstMBI GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
BstMWI GCNNNNNNNGC 4 cut(s) 131, 321, 497, 1862
BstNI CCWGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
BstNSI RCATGY 1 cut(s) 1865
BstPI GGTNACC 1 cut(s) 1168
BstSCI CCNGG 6 cut(s) 93, 1021, 1237, 1473, 1534, 1557
BstSFI CTRYAG 2 cut(s) 1122, 1911
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 5 cut(s) 64, 626, 1802, 1840, 1852
BstV2I GAAGAC 3 cut(s) 64, 1148, 1368
Bsu15I ATCGAT 1 cut(s) 417
BsuI GTATCC 2 cut(s) 181, 723
BsuRI GGCC 5 cut(s) 511, 1377, 1557, 1576, 1842
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 2 cut(s) 120, 1163
BtsCI GGATG 2 cut(s) 513, 945
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 7 cut(s) 223, 238, 316, 856, 1485, 1541, 1759
BveI ACCTGC 2 cut(s) 329, 1820
Cac8I GCNNGC 2 cut(s) 1079, 1863
CaiI CAGNNNCTG 1 cut(s) 985
CfoI GCGC 2 cut(s) 205, 919
Cfr13I GGNCC 8 cut(s) 437, 509, 510, 797, 1376, 1574, 1809, 1841
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 1297, 1332
CviAII CATG 6 cut(s) 228, 450, 1039, 1164, 1269, 1862
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 6 cut(s) 338, 721, 1192, 1328, 1366, 1544
DpnI GATC 6 cut(s) 238, 420, 455, 1540, 1620, 1827
DpnII GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
DrdI GACNNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 1095, 1916
EarI CTCTTC 2 cut(s) 1095, 1916
Ecl136II GAGCTC 1 cut(s) 1088
Eco130I CCWWGG 2 cut(s) 519, 1163
Eco24I GRGCYC 3 cut(s) 269, 513, 1090
Eco31I GGTCTC 1 cut(s) 1568
Eco32I GATATC 2 cut(s) 856, 1666
Eco47I GGWCC 3 cut(s) 437, 797, 1809
Eco47III AGCGCT 1 cut(s) 918
Eco53kI GAGCTC 1 cut(s) 1088
Eco57I CTGAAG 4 cut(s) 171, 1380, 1735, 1854
Eco88I CYCGRG 1 cut(s) 1565
Eco91I GGTNACC 1 cut(s) 1168
EcoICRI GAGCTC 1 cut(s) 1088
EcoNI CCTNNNNNAGG 1 cut(s) 1827
EcoO109I RGGNCCY 2 cut(s) 437, 1809
EcoO65I GGTNACC 1 cut(s) 1168
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 6 cut(s) 93, 1021, 1237, 1473, 1534, 1557
EcoRV GATATC 2 cut(s) 856, 1666
EcoT14I CCWWGG 2 cut(s) 519, 1163
EcoT22I ATGCAT 2 cut(s) 502, 931
EcoT38I GRGCYC 3 cut(s) 269, 513, 1090
ErhI CCWWGG 2 cut(s) 519, 1163
FaeI CATG 6 cut(s) 231, 453, 1042, 1167, 1272, 1865
FaqI GGGAC 2 cut(s) 1504, 1822
FatI CATG 6 cut(s) 227, 449, 1038, 1163, 1268, 1861
FbaI TGATCA 1 cut(s) 1825
Fnu4HI GCNGC 5 cut(s) 53, 640, 1816, 1854, 1866
FokI GGATG 2 cut(s) 500, 932
FriOI GRGCYC 3 cut(s) 269, 513, 1090
Fsp4HI GCNGC 5 cut(s) 53, 640, 1816, 1854, 1866
FspBI CTAG 4 cut(s) 1095, 1322, 1646, 1976
GlaI GCGC 2 cut(s) 204, 918
GluI GCNGC 5 cut(s) 53, 640, 1816, 1854, 1866
GsaI CCCAGC 2 cut(s) 284, 1382
GsuI CTGGAG 1 cut(s) 1518
HaeII RGCGCY 2 cut(s) 206, 920
HaeIII GGCC 5 cut(s) 511, 1377, 1557, 1576, 1842
HapII CCGG 1 cut(s) 579
HhaI GCGC 2 cut(s) 205, 919
Hin1II CATG 6 cut(s) 231, 453, 1042, 1167, 1272, 1865
Hin6I GCGC 2 cut(s) 203, 917
HinP1I GCGC 2 cut(s) 203, 917
HincII GTYRAC 1 cut(s) 1016
HindII GTYRAC 1 cut(s) 1016
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 5 cut(s) 342, 645, 846, 1364, 1450
HpaII CCGG 1 cut(s) 579
HphI GGTGA 2 cut(s) 665, 1210
Hpy166II GTNNAC 4 cut(s) 1016, 1201, 1319, 1612
Hpy188I TCNGA 8 cut(s) 151, 423, 709, 955, 1405, 1455, 1768, 1873
Hpy8I GTNNAC 4 cut(s) 1016, 1201, 1319, 1612
HpyAV CCTTC 8 cut(s) 415, 672, 720, 727, 960, 1262, 1687, 1759
HpyCH4III ACNGT 9 cut(s) 299, 311, 713, 1220, 1313, 1585, 1609, 1888, 1912
HpyCH4IV ACGT 2 cut(s) 10, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 321, 497, 1862
HpyF3I CTNAG 6 cut(s) 338, 721, 1192, 1328, 1366, 1544
HpySE526I ACGT 2 cut(s) 10, 1385
Hsp92II CATG 6 cut(s) 231, 453, 1042, 1167, 1272, 1865
HspAI GCGC 2 cut(s) 203, 917
Kpn2I TCCGGA 1 cut(s) 578
Ksp22I TGATCA 1 cut(s) 1825
Kzo9I GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
LguI GCTCTTC 2 cut(s) 1095, 1916
LmnI GCTCC 3 cut(s) 523, 875, 1085
Lsp1109I GCAGC 5 cut(s) 64, 626, 1802, 1840, 1852
LweI GCATC 2 cut(s) 713, 954
MaeI CTAG 4 cut(s) 1095, 1322, 1646, 1976
MaeII ACGT 2 cut(s) 10, 1385
MaeIII GTNAC 4 cut(s) 1168, 1393, 1483, 1498
MalI GATC 6 cut(s) 238, 420, 455, 1540, 1620, 1827
MboI GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
MboII GAAGA 8 cut(s) 64, 910, 1082, 1106, 1148, 1226, 1373, 1933
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 3 cut(s) 269, 513, 1090
MlyI GAGTC 3 cut(s) 351, 639, 1358
MmeI TCCRAC 1 cut(s) 1939
Mph1103I ATGCAT 2 cut(s) 502, 931
MroI TCCGGA 1 cut(s) 578
MroXI GAANNNNTTC 3 cut(s) 428, 1205, 1748
MseI TTAA 7 cut(s) 545, 932, 1007, 1244, 1389, 1730, 1758
MspA1I CMGCKG 2 cut(s) 639, 1186
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 500
MvaI CCWGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
MwoI GCNNNNNNNGC 4 cut(s) 131, 321, 497, 1862
NcoI CCATGG 1 cut(s) 1163
NdeII GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
NlaIII CATG 6 cut(s) 231, 453, 1042, 1167, 1272, 1865
NlaIV GGNNCC 7 cut(s) 100, 253, 316, 511, 1682, 1810, 1953
NmuCI GTSAC 2 cut(s) 1483, 1498
NsiI ATGCAT 2 cut(s) 502, 931
NspI RCATGY 1 cut(s) 1865
PaeI GCATGC 1 cut(s) 1865
PaeR7I CTCGAG 1 cut(s) 1565
PaqCI CACCTGC 1 cut(s) 329
PciSI GCTCTTC 2 cut(s) 1095, 1916
PctI GAATGC 1 cut(s) 500
PdmI GAANNNNTTC 3 cut(s) 428, 1205, 1748
PfeI GAWTC 2 cut(s) 846, 1450
PflMI CCANNNNNTGG 1 cut(s) 233
PfoI TCCNGGA 2 cut(s) 1237, 1534
PkrI GCNGC 5 cut(s) 54, 641, 1817, 1855, 1867
PleI GAGTC 3 cut(s) 350, 639, 1358
PpsI GAGTC 3 cut(s) 350, 639, 1358
PpuMI RGGWCCY 2 cut(s) 437, 1809
PshBI ATTAAT 1 cut(s) 932
PsiI TTATAA 1 cut(s) 1982
Psp124BI GAGCTC 1 cut(s) 1090
Psp1406I AACGTT 1 cut(s) 1385
Psp5II RGGWCCY 2 cut(s) 437, 1809
Psp6I CCWGG 6 cut(s) 93, 1021, 1237, 1473, 1534, 1557
PspEI GGTNACC 1 cut(s) 1168
PspFI CCCAGC 2 cut(s) 280, 1378
PspGI CCWGG 6 cut(s) 93, 1021, 1237, 1473, 1534, 1557
PspN4I GGNNCC 7 cut(s) 100, 253, 316, 511, 1682, 1810, 1953
PspOMI GGGCCC 1 cut(s) 509
PspPI GGNCC 8 cut(s) 437, 509, 510, 797, 1376, 1574, 1809, 1841
PspPPI RGGWCCY 2 cut(s) 437, 1809
PstNI CAGNNNCTG 1 cut(s) 985
PvuII CAGCTG 2 cut(s) 639, 1186
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SacI GAGCTC 1 cut(s) 1090
SapI GCTCTTC 2 cut(s) 1095, 1916
SaqAI TTAA 7 cut(s) 545, 932, 1007, 1244, 1389, 1730, 1758
SatI GCNGC 5 cut(s) 53, 640, 1816, 1854, 1866
Sau3AI GATC 6 cut(s) 236, 418, 453, 1538, 1618, 1825
Sau96I GGNCC 8 cut(s) 437, 509, 510, 797, 1376, 1574, 1809, 1841
SchI GAGTC 3 cut(s) 351, 639, 1358
ScrFI CCNGG 6 cut(s) 95, 1023, 1239, 1475, 1536, 1559
SduI GDGCHC 3 cut(s) 269, 513, 1090
SfaNI GCATC 2 cut(s) 713, 954
SfcI CTRYAG 2 cut(s) 1122, 1911
Sfr274I CTCGAG 1 cut(s) 1565
SinI GGWCC 3 cut(s) 437, 797, 1809
SlaI CTCGAG 1 cut(s) 1565
SmlI CTYRAG 4 cut(s) 192, 536, 1522, 1565
SmoI CTYRAG 4 cut(s) 192, 536, 1522, 1565
SphI GCATGC 1 cut(s) 1865
SsiI CCGC 3 cut(s) 197, 642, 682
SspI AATATT 1 cut(s) 174
SspMI CTAG 4 cut(s) 1095, 1322, 1646, 1976
SstI GAGCTC 1 cut(s) 1090
StyD4I CCNGG 6 cut(s) 93, 1021, 1237, 1473, 1534, 1557
StyI CCWWGG 2 cut(s) 519, 1163
TaaI ACNGT 9 cut(s) 299, 311, 713, 1220, 1313, 1585, 1609, 1888, 1912
TaiI ACGT 2 cut(s) 13, 1388
TaqI TCGA 3 cut(s) 157, 417, 1566
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 2 cut(s) 846, 1450
Tru1I TTAA 7 cut(s) 545, 932, 1007, 1244, 1389, 1730, 1758
Tru9I TTAA 7 cut(s) 545, 932, 1007, 1244, 1389, 1730, 1758
TscAI CASTG 7 cut(s) 223, 238, 316, 856, 1492, 1548, 1759
TseFI GTSAC 2 cut(s) 1483, 1498
TseI GCWGC 5 cut(s) 52, 639, 1815, 1853, 1865
Tsp45I GTSAC 2 cut(s) 1483, 1498
TspDTI ATGAA 6 cut(s) 50, 62, 730, 874, 1775, 1934
TspRI CASTG 7 cut(s) 223, 238, 316, 856, 1492, 1548, 1759
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 3 cut(s) 437, 797, 1809
VspI ATTAAT 1 cut(s) 932
XagI CCTNNNNNAGG 1 cut(s) 1827
XapI RAATTY 9 cut(s) 37, 257, 657, 835, 892, 973, 1261, 1298, 1782
XceI RCATGY 1 cut(s) 1865
XhoI CTCGAG 1 cut(s) 1565
XmnI GAANNNNTTC 3 cut(s) 428, 1205, 1748
XspI CTAG 4 cut(s) 1095, 1322, 1646, 1976
Zsp2I ATGCAT 2 cut(s) 502, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.