Rroxscaffold_1G00059000

Di-glucose binding within endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
81000474 .. 81003434
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059000.1

Sequence Viewer

Length: 699 bp
ATGCATACGAGTTCCTTCGTCGAGCAACAGCTCGAACTGAGAGGGAGTGATGACATATTGTATGAGACTGAAGACTCAGCTCTTGGCCCAGCAACATTTAATGTAACAAGTTTAGAGAAATGGGCTGTTAGCAATGTGGGTTTGTTTGCGGACAGAAAGAATCCGAGCTTTGTGGTAAATACCCTGGCACATGTCACTGGGACAGATGTGACCCCAGAGCTTTTCCAGACCTCAAGGTTGTCTCCAGGATCACTGAGATACTATGGCCTGGGTCTTGAGAATGGGCCTTATACTGTAAAATTGCAATTTGCAGAAACAGTTTTCGATGATCGTGCCTTGCAAACTTGTCAAAGTCTAGGACGGCGTATGTTTGATATCTATATTCAGGGGAACCTTGTATTGAAGGACTTTGACATATCAAAGCAGGCAGGAGGGGTTTTAAGAGCTGTTGTCAAAACCTTCAGTGTTAATGTTTCAGAGAATTATCTTGAAATTTATTTATTCTGGGCTGGTAAGGGGACCTGCTGCACACCTGATCAAGGTCATTACAGCCCACTAATAGCTGCTGTGCATGCTGCTTCAGATTTTACACCAACTGTTTCTGGTGTTCCACCGACTACTCTAGGAATGAAGAGCAGGACAGGGCTGATGGGTATTCTGGTTCCTGTTGCAGTTTTGGTGTTGCTAGTTATAATGTGA

Protein Analysis

232

Amino Acids

25.29

Weight (kDa)

5.34

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 16 - 190 2.2e-33 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 692
Acc36I ACCTGC 1 cut(s) 530
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 256
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 3 cut(s) 90, 445, 564
AfiI CCNNNNNNNGG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 403, 491
AjnI CCWGG 3 cut(s) 183, 244, 267
AluBI AGCT 6 cut(s) 31, 80, 168, 220, 446, 563
AluI AGCT 6 cut(s) 31, 80, 168, 220, 446, 563
Alw26I GTCTC 2 cut(s) 59, 246
AlwI GGATC 1 cut(s) 256
AoxI GGCC 3 cut(s) 85, 265, 284
ApeKI GCWGC 3 cut(s) 525, 563, 575
ApoI RAATTY 1 cut(s) 492
AspS9I GGNCC 3 cut(s) 86, 284, 519
AvaII GGWCC 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 512, 550, 562
BccI CCATC 1 cut(s) 643
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 3 cut(s) 185, 246, 269
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 59, 246
BfaI CTAG 3 cut(s) 356, 623, 686
BfuAI ACCTGC 1 cut(s) 530
BisI GCNGC 3 cut(s) 526, 564, 576
BlsI GCNGC 3 cut(s) 527, 565, 577
Bme1390I CCNGG 3 cut(s) 185, 246, 269
Bme18I GGWCC 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 86, 284, 519
BmiI GGNNCC 3 cut(s) 392, 520, 663
BmrFI CCNGG 3 cut(s) 185, 246, 269
BmrI ACTGGG 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 228
BpuEI CTTGAG 2 cut(s) 217, 296
BsaJI CCNNGG 2 cut(s) 183, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 3 cut(s) 185, 246, 269
BseDI CCNNGG 2 cut(s) 183, 268
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 3 cut(s) 29, 90, 245
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 3 cut(s) 512, 550, 562
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 511
BshFI GGCC 3 cut(s) 87, 267, 286
BslFI GGGAC 2 cut(s) 214, 532
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 2 cut(s) 59, 246
BsmFI GGGAC 2 cut(s) 214, 532
BsnI GGCC 3 cut(s) 87, 267, 286
Bsp143I GATC 3 cut(s) 248, 328, 535
BspACI CCGC 1 cut(s) 149
BspANI GGCC 3 cut(s) 87, 267, 286
BspCNI CTCAG 3 cut(s) 30, 89, 246
BspLI GGNNCC 3 cut(s) 392, 520, 663
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 183, 268
BssMI GATC 3 cut(s) 248, 328, 535
Bst2UI CCWGG 3 cut(s) 185, 246, 269
Bst4CI ACNGT 3 cut(s) 295, 319, 598
Bst6I CTCTTC 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 426, 573
BstDEI CTNAG 3 cut(s) 38, 76, 254
BstENI CCTNNNNNAGG 1 cut(s) 537
BstKTI GATC 3 cut(s) 251, 331, 538
BstMAI GTCTC 2 cut(s) 59, 246
BstMBI GATC 3 cut(s) 248, 328, 535
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNI CCWGG 3 cut(s) 185, 246, 269
BstNSI RCATGY 2 cut(s) 194, 575
BstSCI CCNGG 3 cut(s) 183, 244, 267
BstV1I GCAGC 3 cut(s) 512, 550, 562
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 3 cut(s) 87, 267, 286
BtsIMutI CAGTG 3 cut(s) 195, 251, 469
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 2 cut(s) 426, 573
Cfr13I GGNCC 3 cut(s) 86, 284, 519
CviAII CATG 2 cut(s) 191, 572
DdeI CTNAG 3 cut(s) 38, 76, 254
DpnI GATC 3 cut(s) 250, 330, 537
DpnII GATC 3 cut(s) 248, 328, 535
Eam1104I CTCTTC 1 cut(s) 626
EarI CTCTTC 1 cut(s) 626
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 519
Eco57I CTGAAG 3 cut(s) 90, 445, 564
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 519
EcoRII CCWGG 3 cut(s) 183, 244, 267
EcoRV GATATC 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 194, 575
FaqI GGGAC 2 cut(s) 214, 532
FatI CATG 2 cut(s) 190, 571
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 526, 564, 576
Fsp4HI GCNGC 3 cut(s) 526, 564, 576
FspBI CTAG 3 cut(s) 356, 623, 686
GluI GCNGC 3 cut(s) 526, 564, 576
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 3 cut(s) 87, 267, 286
Hin1II CATG 2 cut(s) 194, 575
HinfI GANTC 2 cut(s) 74, 160
Hpy188I TCNGA 3 cut(s) 165, 478, 583
Hpy188III TCNNGA 3 cut(s) 226, 275, 488
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 25, 397, 469
HpyCH4III ACNGT 3 cut(s) 295, 319, 598
HpyCH4V TGCA 7 cut(s) 4, 304, 311, 340, 528, 571, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 3 cut(s) 38, 76, 254
Hsp92II CATG 2 cut(s) 194, 575
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 248, 328, 535
LguI GCTCTTC 1 cut(s) 626
Lsp1109I GCAGC 3 cut(s) 512, 550, 562
MaeI CTAG 3 cut(s) 356, 623, 686
MaeIII GTNAC 3 cut(s) 103, 193, 208
MalI GATC 3 cut(s) 250, 330, 537
MboI GATC 3 cut(s) 248, 328, 535
MboII GAAGA 2 cut(s) 83, 643
MluCI AATT 4 cut(s) 299, 305, 481, 492
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 3 cut(s) 35, 241, 425
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 99, 440, 468
MspR9I CCNGG 3 cut(s) 185, 246, 269
MvaI CCWGG 3 cut(s) 185, 246, 269
MwoI GCNNNNNNNGC 1 cut(s) 572
NdeII GATC 3 cut(s) 248, 328, 535
NlaIII CATG 2 cut(s) 194, 575
NlaIV GGNNCC 3 cut(s) 392, 520, 663
NmuCI GTSAC 2 cut(s) 193, 208
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 194, 575
PaeI GCATGC 1 cut(s) 575
PciI ACATGT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 160
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 3 cut(s) 527, 565, 577
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 519
PscI ACATGT 1 cut(s) 190
PsiI TTATAA 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 519
Psp6I CCWGG 3 cut(s) 183, 244, 267
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 3 cut(s) 183, 244, 267
PspN4I GGNNCC 3 cut(s) 392, 520, 663
PspPI GGNCC 3 cut(s) 86, 284, 519
PspPPI RGGWCCY 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 626
SaqAI TTAA 3 cut(s) 99, 440, 468
SatI GCNGC 3 cut(s) 526, 564, 576
Sau3AI GATC 3 cut(s) 248, 328, 535
Sau96I GGNCC 3 cut(s) 86, 284, 519
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 185, 246, 269
SinI GGWCC 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 232, 275
SmoI CTYRAG 2 cut(s) 232, 275
SphI GCATGC 1 cut(s) 575
Sse9I AATT 4 cut(s) 299, 305, 481, 492
SsiI CCGC 1 cut(s) 149
SspMI CTAG 3 cut(s) 356, 623, 686
StyD4I CCNGG 3 cut(s) 183, 244, 267
TaaI ACNGT 3 cut(s) 295, 319, 598
TaqI TCGA 3 cut(s) 21, 33, 324
TasI AATT 4 cut(s) 299, 305, 481, 492
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 3 cut(s) 99, 440, 468
Tru9I TTAA 3 cut(s) 99, 440, 468
TscAI CASTG 3 cut(s) 202, 258, 469
TseFI GTSAC 2 cut(s) 193, 208
TseI GCWGC 3 cut(s) 525, 563, 575
Tsp45I GTSAC 2 cut(s) 193, 208
TspDTI ATGAA 1 cut(s) 644
TspRI CASTG 3 cut(s) 202, 258, 469
VpaK11BI GGWCC 1 cut(s) 519
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 492
XceI RCATGY 2 cut(s) 194, 575
XspI CTAG 3 cut(s) 356, 623, 686
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.