pycom05g24100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25685097 .. 25685508
412 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24100.2

Sequence Viewer

Length: 339 bp
ATGGTCTTCTTCTTACATGCAATGCATGATTCAGCCAGTCGGAATACAAGTGTTGGTCGTTTAAGTTCCCGCCGTCGAGGAGAGCAAGTTCTGCACATGTACAATATGAAGTTGATGATGAGGATACTATTACTCTGCTTCCTCAGCTGCTTCTGGTTTCAGCTGTCCTTTGCTCGAAAGGCTACCACTGATCCATCTGAAGTGTTTTTGACCAGGAACTGGGTTTTTTCCCCTCAACAAAATGACATTTTAATTGTTCTTCAACTATATGAAATGAAGTTTCGAAGAAATTATTGTAAAGCCCTTTTTCTTCCCATATACAAAACATCCAAAAATTAA

Protein Analysis

113

Amino Acids

13.42

Weight (kDa)

10.18

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 212
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 147, 163
AluI AGCT 2 cut(s) 147, 163
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 147
AsuII TTCGAA 1 cut(s) 283
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 214
BciVI GTATCC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 36, 224
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 36, 224
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 156
BspPI GGATC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 36, 224
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 326
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 91, 144, 179
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 2 cut(s) 20, 100
BstSCI CCNGG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 134
BsuI GTATCC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 219
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 17, 26, 97
CviJI RGCY 5 cut(s) 35, 147, 163, 182, 302
CviKI_1 RGCY 5 cut(s) 35, 147, 163, 182, 302
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 212
EcoT22I ATGCAT 1 cut(s) 27
FaeI CATG 3 cut(s) 20, 29, 100
FaiI YATR 8 cut(s) 18, 27, 98, 107, 268, 270, 317, 319
FatI CATG 3 cut(s) 16, 25, 96
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
Hin1II CATG 3 cut(s) 20, 29, 100
HinfI GANTC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 42, 199
Hpy99I CGWCG 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 20, 25, 94
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 144, 179
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 3 cut(s) 20, 29, 100
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 49, 139, 199, 205, 226
Lsp1109I GCAGC 1 cut(s) 134
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 251, 297, 302
MluCI AATT 3 cut(s) 252, 289, 334
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 4 cut(s) 71, 114, 152, 243
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 3 cut(s) 62, 251, 337
MspA1I CMGCKG 2 cut(s) 147, 163
MspR9I CCNGG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 91, 144, 179
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 20, 29, 100
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 2 cut(s) 20, 100
NspV TTCGAA 1 cut(s) 283
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 219
PkrI GCNGC 1 cut(s) 149
PscI ACATGT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PstNI CAGNNNCTG 1 cut(s) 219
PvuII CAGCTG 2 cut(s) 147, 163
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 62, 251, 337
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 214
SetI ASST 2 cut(s) 149, 165
SfuI TTCGAA 1 cut(s) 283
Sse9I AATT 3 cut(s) 252, 289, 334
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 212
TaqI TCGA 3 cut(s) 76, 175, 283
TasI AATT 3 cut(s) 252, 289, 334
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 62, 251, 337
Tru9I TTAA 3 cut(s) 62, 251, 337
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 122, 285, 290
TspRI CASTG 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 219
XceI RCATGY 2 cut(s) 20, 100
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.