Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000088

Physical Location & Seq

Genomic Coordinates Forward (+)

14005941 .. 14015577

Gene Structure 9637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACTCACCCCAACAATCAGTCTACTGGCATCACAACCGGTGCTAACACCGGAATTGACCTGATGCAGTCTCCTGTGAATCCTAATCATTCATTGCTCACTGGGATTATAGGAGAAGGAAGGAGAGTCTATGCTCTAAACAAACGAGGAGTGTTTCCAAAGGAACTTTTGGCTTTGAGATACCTGACCTTCTTGAAAATCGATCAGAATTATTTCACAGGTCCTCTACCAGCATGGATCGGCAATATGACTGCATTGACATTATTGTCAATTGCTCACAATGCATTCTCTGGGCCCATTCCCAAGGAGCTTGGAAACCTCAAGGACTTAAATATGCTTTTCTCCATGCAGTTTTGTAGGTGGGGAAAAATTGGGAAAAAGATGACGGAAGGTAAGATGGAATTGGGTTCTGCGAGAGTGTACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.68

Weight (kDa)

9.81

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	52 - 121	7.6e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca	FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica	MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica	Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis	pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis	RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata	RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora	Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa	Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha	Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana	Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	423
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	293
ApaI	GGGCCC	1 cut(s)	297
AsiGI	ACCGGT	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	3 cut(s)	221, 293, 294
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	297
BccI	CCATC	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	221, 293, 294
BmiI	GGNNCC	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	39, 54
BmuI	ACTGGG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	2 cut(s)	38, 50
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	31, 106
Bse3DI	GCAATG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	31, 106
BseRI	GAGGAG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	295
BshTI	ACCGGT	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	39, 51
BsmAI	GTCTC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	295
Bsp120I	GGGCCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	202, 237
BspANI	GGCC	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	31, 106
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	202, 237
BssT1I	CCWWGG	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	424
BstKTI	GATC	2 cut(s)	205, 240
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	202, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	295
BsuTUI	ATCGAT	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	221, 293, 294
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	421
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	2 cut(s)	234, 346
CviJI	RGCY	3 cut(s)	173, 295, 310
CviKI_1	RGCY	3 cut(s)	173, 295, 310
CviQI	GTAC	1 cut(s)	421
DpnI	GATC	2 cut(s)	204, 239
DpnII	GATC	2 cut(s)	202, 237
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	237, 349
FaiI	YATR	6 cut(s)	110, 132, 235, 248, 335, 347
FatI	CATG	2 cut(s)	233, 345
FblI	GTMKAC	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	2 cut(s)	39, 51
Hin1II	CATG	2 cut(s)	237, 349
HinfI	GANTC	3 cut(s)	4, 79, 126
HpaII	CCGG	2 cut(s)	39, 51
Hpy166II	GTNNAC	2 cut(s)	24, 421
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	24, 421
HpyAV	CCTTC	4 cut(s)	110, 114, 199, 383
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	67, 254, 284, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	237, 349
Kzo9I	GATC	2 cut(s)	202, 237
LmnI	GCTCC	1 cut(s)	307
LweI	GCATC	2 cut(s)	39, 54
MaeII	ACGT	1 cut(s)	423
MalI	GATC	2 cut(s)	204, 239
MboI	GATC	2 cut(s)	202, 237
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	5 cut(s)	54, 208, 270, 369, 401
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	140, 234, 329
Mph1103I	ATGCAT	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	1 cut(s)	329
MspI	CCGG	2 cut(s)	39, 51
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	2 cut(s)	202, 237
NlaIII	CATG	2 cut(s)	237, 349
NlaIV	GGNNCC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	286
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	79
PinAI	ACCGGT	1 cut(s)	38
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Ppu21I	YACGTR	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	295
PspOMI	GGGCCC	1 cut(s)	293
PspPI	GGNCC	3 cut(s)	221, 293, 294
PspPPI	RGGWCCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	329
Sau3AI	GATC	2 cut(s)	202, 237
Sau96I	GGNCC	3 cut(s)	221, 293, 294
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	9 cut(s)	63, 186, 191, 223, 312, 321, 362, 394, 426
SfaNI	GCATC	2 cut(s)	39, 54
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	54, 208, 270, 369, 401
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	54, 208, 270, 369, 401
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.