Rw5G012260

Di-glucose binding within endoplasmic reticulum

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
14376199 .. 14377036
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G012260.1

Sequence Viewer

Length: 606 bp
ATGTTTATTGTAACAAGTTCAGAGAAATGGGCTGTTAGCAATGTGGGTTTGTTTGCTGACAGAAAGAATCCGAGCTTTGTGGTAAATACCCTGGCACAAGTCAATAGGACAGATGTGACCCCAGAGCTTTTCCAGACCTCAAGGTTGTCTCCAGGATCACTGAGATACTATGGCCTGGGTCTTGAGAATGGGCCTTATACTGTAAAATTGCAATTTGCAGAAACAGTTTTCGATGATCGTGCCATGCAAACTTGGCAAAGTCTAGGACGGCGTATGTTTGATATCTATATTCAGGGGAACCTTGTATTGAAGGACTTTGACATATCAAAGGAGGCAGGAGGGGTTTTAAGAGCTGTTGTGAAAACCTTCAGTGTTAATGTTTCAGAGAATTATCTTGAAATTCATTTATTCTGGGCTGGTAAGGGGACCTGCTGCACACCTGATCAAGGTCATTACGGCCCACTAATAGCTGCTGTGCATGCTGCTTCAGATTTTACACCAACTGTTTCTGGTGTTCCACCAACTACTGTAGGAATGAAGAGCAGGACAGGACTGATGGGTATTCTGGTTCCTGTTGGAGTTTTGGTGTTGCTAGTTATAATTTGA

Protein Analysis

201

Amino Acids

21.98

Weight (kDa)

7.78

Isoelectric Point (pI)

26.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 32 - 159 1.1e-34 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56120 AT1G56120 AT1G56120 AT1G56130 AT1G56130 AT1G56130 AT1G56140 AT1G56145 AT1G56145 AT1G56145
fragaria_vesca FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_1g21070 FvH4_3g15410 FvH4_3g15410 FvH4_3g15430 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g15440 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g40970 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030 FvH4_3g41030
malus_domestica MD00G1023600.v1.1 MD00G1024400.v1.1 MD00G1024500.v1.1 MD00G1046700.v1.1 MD00G1047400.v1.1 MD00G1183000.v1.1 MD05G1180400.v1.1 MD05G1180500.v1.1 MD05G1257000.v1.1 MD05G1257600.v1.1 MD05G1260400.v1.1 MD05G1260700.v1.1 MD05G1260900.v1.1 MD05G1261000.v1.1 MD05G1261100.v1.1 MD15G1239100.v1.1 MD15G1239200.v1.1 MD15G1239300.v1.1 MD15G1239400.v1.1 MD15G1239500.v1.1 MD15G1240200.v1.1
prunus_persica Prupe.4G104300_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104500_v2.0.a1 Prupe.4G104700_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G104900_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G105100_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.4G136900_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1 Prupe.7G040400_v2.0.a1
pyrus_communis pycom05g20610 pycom05g23640 pycom05g23650 pycom05g23660 pycom05g23700 pycom05g23820 pycom05g23830 pycom05g23840 pycom05g23850 pycom05g23960 pycom05g23970 pycom05g23980 pycom05g24080 pycom05g24100 pycom05g24110 pycom05g24180 pycom05g24190 pycom05g24230 pycom05g24240 pycom05g24420 pycom05g24440 pycom05g24450 pycom05g24460 pycom05g24480
rosa_chinensis RchiOBHm_Chr2g0114641 RchiOBHm_Chr2g0114651 RchiOBHm_Chr2g0114711 RchiOBHm_Chr2g0114821 RchiOBHm_Chr2g0114861 RchiOBHm_Chr2g0114871 RchiOBHm_Chr2g0124231 RchiOBHm_Chr2g0142621 RchiOBHm_Chr3g0487791 RchiOBHm_Chr5g0018731 RchiOBHm_Chr5g0018761 RchiOBHm_Chr5g0018861 RchiOBHm_Chr5g0018881 RchiOBHm_Chr5g0018891 RchiOBHm_Chr5g0018901 RchiOBHm_Chr5g0018911 RchiOBHm_Chr5g0025891 RchiOBHm_Chr5g0025931 RchiOBHm_Chr5g0067281 RchiOBHm_Chr5g0073701 RchiOBHm_Chr5g0073751 RchiOBHm_Chr5g0073781 RchiOBHm_Chr5g0083701 RchiOBHm_Chr5g0083711
rosa_laevigata RLG00000018119 RLG00000018124 RLG00000018129 RLG00000018789 RLG00000032392 RLG00000032393 RLG00000032396 RLG00000032397 RLG00000032404 RLG00000032405 RLG00000032407 RLG00000032408 RLG00000032409 RLG00000032881 RLG00000032882 RLG00000036415 RLG00000036417 RLG00000037039
rosa_multiflora Rmu_co7975474.1_g000001 Rmu_co7979010.1_g000001 Rmu_co8379171.1_g000001 Rmu_co8499889.1_g000001 Rmu_sc0000370.1_g000013 Rmu_sc0000370.1_g000026 Rmu_sc0000371.1_g000027 Rmu_sc0000371.1_g000040 Rmu_sc0000563.1_g000010 Rmu_sc0000563.1_g000020 Rmu_sc0000968.1_g000029 Rmu_sc0001296.1_g000001 Rmu_sc0001296.1_g000003 Rmu_sc0001296.1_g000005 Rmu_sc0002764.1_g000042 Rmu_sc0002764.1_g000056 Rmu_sc0002968.1_g000007 Rmu_sc0003020.1_g000001 Rmu_sc0003020.1_g000002 Rmu_sc0004438.1_g000005 Rmu_sc0004501.1_g000011 Rmu_sc0004990.1_g000002 Rmu_sc0004990.1_g000022 Rmu_sc0005472.1_g000014 Rmu_sc0005839.1_g000003 Rmu_sc0005839.1_g000004 Rmu_sc0009248.1_g000007 Rmu_sc0014265.1_g000001 Rmu_sc0014538.1_g000007 Rmu_sc0016536.1_g000001 Rmu_sc0024156.1_g000001 Rmu_sc0032205.1_g000001
rosa_roxburghii Rroxscaffold_1G00007560 Rroxscaffold_1G00007610 Rroxscaffold_1G00053320 Rroxscaffold_1G00058940 Rroxscaffold_1G00058950 Rroxscaffold_1G00059000 Rroxscaffold_1G00059010 Rroxscaffold_1G00059040 Rroxscaffold_1G00073840 Rroxscaffold_1G00073870 Rroxscaffold_1G00073910 Rroxscaffold_1G00073920 Rroxscaffold_2G00103580 Rroxscaffold_2G00120060 Rroxscaffold_2G00130350 Rroxscaffold_3G00218190 Rroxscaffold_3G00237270
rosa_rugosa Rorug02G0190800.1 Rorug02G0190900 Rorug02G0190900 Rorug02G0191000 Rorug02G0191100 Rorug02G0191200 Rorug02G0249700 Rorug02G0249800 Rorug02G0249900 Rorug02G0250000 Rorug05G0046300 Rorug05G0046400 Rorug05G0046500 Rorug05G0046600 Rorug05G0089500 Rorug05G0089500 Rorug05G0089600 Rorug05G0089700 Rorug05G0092000 Rorug05G0426100 Rorug05G0485000
rosa_samantha Rh2AG249300 Rh2AG249800 Rh2CG252900 Rh2CG253200 Rh2CG254000 Rh2CG254200 Rh2DG257000 Rh2DG257100 Rh2DG257600 Rh2DG258000 Rh2DG333000 Rh2DG333100 Rh3DG318500 Rh4AG222800 Rh4DG033400 Rh5AG137400 Rh5AG137600 Rh5AG137700 Rh5AG137800 Rh5AG138100 Rh5AG138200 Rh5AG138300 Rh5AG138400 Rh5AG181400 Rh5AG181500 Rh5AG181600 Rh5AG483000 Rh5AG483600 Rh5AG537500 Rh5AG538200 Rh5BG129600 Rh5BG136800 Rh5BG136900 Rh5BG137000 Rh5CG148200 Rh5CG148400 Rh5CG197700 Rh5CG527400 Rh5CG527900 Rh5DG137200 Rh5DG137400 Rh5DG137600 Rh5DG137700 Rh5DG137800 Rh5DG137900 Rh5DG138000 Rh5DG180000 Rh5DG516100 Rh5DG516600 Rh5DG571400 Rh6DG496500
rosa_wichuraiana Rw0G007630 Rw2G019360 Rw2G019370 Rw2G019380 Rw2G019400 Rw2G019440 Rw2G019460 Rw2G024860 Rw5G012180 Rw5G012230 Rw5G012240 Rw5G012260 Rw5G016460 Rw5G016510 Rw5G044870 Rw5G044900 Rw5G044930 Rw5G044970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 437
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 352, 471
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 2 cut(s) 310, 398
AjnI CCWGG 3 cut(s) 90, 151, 174
AluBI AGCT 4 cut(s) 75, 127, 353, 470
AluI AGCT 4 cut(s) 75, 127, 353, 470
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 163
AoxI GGCC 3 cut(s) 172, 191, 457
ApeKI GCWGC 3 cut(s) 432, 470, 482
ApoI RAATTY 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 191, 426, 458
AvaII GGWCC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 419, 457, 469
BccI CCATC 1 cut(s) 550
BceAI ACGGC 2 cut(s) 284, 472
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 3 cut(s) 92, 153, 176
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 263, 593
BfmI CTRYAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 437
BisI GCNGC 3 cut(s) 433, 471, 483
BlsI GCNGC 3 cut(s) 434, 472, 484
Bme1390I CCNGG 3 cut(s) 92, 153, 176
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 3 cut(s) 191, 426, 458
BmiI GGNNCC 3 cut(s) 299, 427, 570
BmrFI CCNGG 3 cut(s) 92, 153, 176
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 2 cut(s) 124, 203
BsaJI CCNNGG 2 cut(s) 90, 175
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 3 cut(s) 92, 153, 176
BseDI CCNNGG 2 cut(s) 90, 175
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 3 cut(s) 419, 457, 469
BsgI GTGCAG 1 cut(s) 418
BshFI GGCC 3 cut(s) 174, 193, 459
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 3 cut(s) 174, 193, 459
Bsp143I GATC 3 cut(s) 155, 235, 442
BspANI GGCC 3 cut(s) 174, 193, 459
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 3 cut(s) 299, 427, 570
BspMI ACCTGC 1 cut(s) 437
BspPI GGATC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 90, 175
BssMI GATC 3 cut(s) 155, 235, 442
Bst2UI CCWGG 3 cut(s) 92, 153, 176
Bst4CI ACNGT 4 cut(s) 202, 226, 505, 529
Bst6I CTCTTC 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 444
BstKTI GATC 3 cut(s) 158, 238, 445
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 155, 235, 442
BstMWI GCNNNNNNNGC 2 cut(s) 253, 479
BstNI CCWGG 3 cut(s) 92, 153, 176
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 3 cut(s) 90, 151, 174
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 3 cut(s) 419, 457, 469
BsuRI GGCC 3 cut(s) 174, 193, 459
BtsIMutI CAGTG 2 cut(s) 158, 376
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 1 cut(s) 480
Cfr13I GGNCC 3 cut(s) 191, 426, 458
CviAII CATG 2 cut(s) 244, 479
CviJI RGCY 9 cut(s) 32, 75, 127, 174, 193, 353, 416, 459, 470
CviKI_1 RGCY 9 cut(s) 32, 75, 127, 174, 193, 353, 416, 459, 470
DdeI CTNAG 1 cut(s) 161
DpnI GATC 3 cut(s) 157, 237, 444
DpnII GATC 3 cut(s) 155, 235, 442
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 2 cut(s) 352, 471
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 3 cut(s) 90, 151, 174
EcoRV GATATC 1 cut(s) 283
FaeI CATG 2 cut(s) 247, 482
FaiI YATR 8 cut(s) 171, 198, 245, 275, 288, 323, 480, 599
FaqI GGGAC 1 cut(s) 439
FatI CATG 2 cut(s) 243, 478
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 433, 471, 483
Fsp4HI GCNGC 3 cut(s) 433, 471, 483
FspBI CTAG 2 cut(s) 263, 593
GluI GCNGC 3 cut(s) 433, 471, 483
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 3 cut(s) 174, 193, 459
Hin1II CATG 2 cut(s) 247, 482
HinfI GANTC 1 cut(s) 67
Hpy188I TCNGA 4 cut(s) 22, 72, 385, 490
Hpy188III TCNNGA 3 cut(s) 133, 182, 395
HpyAV CCTTC 2 cut(s) 304, 376
HpyCH4III ACNGT 4 cut(s) 202, 226, 505, 529
HpyCH4V TGCA 5 cut(s) 211, 218, 247, 435, 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 479
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 2 cut(s) 247, 482
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 155, 235, 442
LguI GCTCTTC 1 cut(s) 533
Lsp1109I GCAGC 3 cut(s) 419, 457, 469
MaeI CTAG 2 cut(s) 263, 593
MaeIII GTNAC 2 cut(s) 10, 115
MalI GATC 3 cut(s) 157, 237, 444
MboI GATC 3 cut(s) 155, 235, 442
MboII GAAGA 1 cut(s) 550
MluCI AATT 5 cut(s) 206, 212, 388, 399, 600
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 3 cut(s) 148, 325, 332
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 2 cut(s) 347, 375
MspR9I CCNGG 3 cut(s) 92, 153, 176
MvaI CCWGG 3 cut(s) 92, 153, 176
MwoI GCNNNNNNNGC 2 cut(s) 253, 479
NdeII GATC 3 cut(s) 155, 235, 442
NlaIII CATG 2 cut(s) 247, 482
NlaIV GGNNCC 3 cut(s) 299, 427, 570
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 482
PaeI GCATGC 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 3 cut(s) 434, 472, 484
PpuMI RGGWCCY 1 cut(s) 426
PsiI TTATAA 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 90, 151, 174
PspGI CCWGG 3 cut(s) 90, 151, 174
PspN4I GGNNCC 3 cut(s) 299, 427, 570
PspPI GGNCC 3 cut(s) 191, 426, 458
PspPPI RGGWCCY 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 533
SaqAI TTAA 2 cut(s) 347, 375
SatI GCNGC 3 cut(s) 433, 471, 483
Sau3AI GATC 3 cut(s) 155, 235, 442
Sau96I GGNCC 3 cut(s) 191, 426, 458
ScrFI CCNGG 3 cut(s) 92, 153, 176
SfcI CTRYAG 1 cut(s) 528
SinI GGWCC 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 139, 182
SmoI CTYRAG 2 cut(s) 139, 182
SphI GCATGC 1 cut(s) 482
Sse9I AATT 5 cut(s) 206, 212, 388, 399, 600
SspMI CTAG 2 cut(s) 263, 593
StyD4I CCNGG 3 cut(s) 90, 151, 174
TaaI ACNGT 4 cut(s) 202, 226, 505, 529
TaqI TCGA 1 cut(s) 231
TasI AATT 5 cut(s) 206, 212, 388, 399, 600
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 347, 375
Tru9I TTAA 2 cut(s) 347, 375
TscAI CASTG 2 cut(s) 165, 376
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 3 cut(s) 432, 470, 482
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 392, 551
TspRI CASTG 2 cut(s) 165, 376
VpaK11BI GGWCC 1 cut(s) 426
XagI CCTNNNNNAGG 1 cut(s) 444
XapI RAATTY 1 cut(s) 399
XceI RCATGY 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 2 cut(s) 263, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.